BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4931.p (482 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777176.1| hypothetical protein Hsero_3790 [Herbaspiril... 542 e-152 gb|ACL37096.1| hypothetical protein [uncultured bacterium fCS1] 491 e-136 ref|YP_004684778.1| hypothetical protein CNE_1c09390 [Cupriavidu... 479 e-133 emb|CBA33652.1| hypothetical protein Csp_B20130 [Curvibacter put... 478 e-132 ref|YP_725508.1| hypothetical protein H16_A0997 [Ralstonia eutro... 478 e-132 >ref|YP_003777176.1| hypothetical protein Hsero_3790 [Herbaspirillum seropedicae SmR1] gb|ADJ65268.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 282/304 (92%), Positives = 290/304 (95%) Query: 179 MMDKEELVKRVHRELADSYDEEMELELEDRTVDPVTGEFSSAHGSEEKEYRRLYFRELFR 238 MMDKEELVKRVHRELADSYDEEMELELEDRT+DPVTGEFSSAHG EEKEYRRLYFRELFR Sbjct: 1 MMDKEELVKRVHRELADSYDEEMELELEDRTIDPVTGEFSSAHGEEEKEYRRLYFRELFR 60 Query: 239 LQGELVKLQDWVVQTGHKVVIVFEGRDAAGKGGVIKRITQRLNPRVARVAALPAPNDRER 298 LQGELVKLQDWVVQTGHKVVIVFEGRDAAGKGGVIKRITQRLNPRVARVAALPAPNDRER Sbjct: 61 LQGELVKLQDWVVQTGHKVVIVFEGRDAAGKGGVIKRITQRLNPRVARVAALPAPNDRER 120 Query: 299 TQWYFQRYVSHLPAAGEIVLFDRSWYNRAGVERVMGFCTDEQYEEFFRSVPEFERMLTRA 358 TQWYFQRYVSHLPAAGEIVLFDRSWYNRAGVERVMGFC+DEQYEEFFRSVPEFERMLTRA Sbjct: 121 TQWYFQRYVSHLPAAGEIVLFDRSWYNRAGVERVMGFCSDEQYEEFFRSVPEFERMLTRA 180 Query: 359 GIQVIKYWFSITDEEQHLRFLSRIHDPLKQWKLSPMDLESRRRWEEYTKAKEMMLERTHI 418 GIQVIKYWFSITDEEQHLRFLSRIHDPLKQWKLSPMDLESRRRWEEYTKAKE+MLERTHI Sbjct: 181 GIQVIKYWFSITDEEQHLRFLSRIHDPLKQWKLSPMDLESRRRWEEYTKAKEVMLERTHI 240 Query: 419 AEAPWWIVQAVDKKKARLNCIHHLLNQMPYGEVEHAPISLPERERHDDYFRREVSSEILV 478 EAPWW+VQAVDKKKARLNCIHHLL QMPY EV H P+ LPERERH+DY R V ++V Sbjct: 241 PEAPWWVVQAVDKKKARLNCIHHLLQQMPYAEVPHPPVLLPERERHEDYERHPVPDSMIV 300 Query: 479 PEVY 482 PE Y Sbjct: 301 PEFY 304 >gb|ACL37096.1| hypothetical protein [uncultured bacterium fCS1] Length = 305 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 235/300 (78%), Positives = 266/300 (88%) Query: 183 EELVKRVHRELADSYDEEMELELEDRTVDPVTGEFSSAHGSEEKEYRRLYFRELFRLQGE 242 +EL++R+HR+L D YDEE+E+E EDRTV +TG+ S +++KE RR YFRELFRLQGE Sbjct: 6 DELMRRIHRDLIDGYDEELEMEFEDRTVAELTGDASPDFTAQDKEARRQYFRELFRLQGE 65 Query: 243 LVKLQDWVVQTGHKVVIVFEGRDAAGKGGVIKRITQRLNPRVARVAALPAPNDRERTQWY 302 LVKLQDWVV TG KVVIVFEGRDAAGKGGVIKRITQRLNPRV RVAALPAPNDRERTQWY Sbjct: 66 LVKLQDWVVATGKKVVIVFEGRDAAGKGGVIKRITQRLNPRVCRVAALPAPNDRERTQWY 125 Query: 303 FQRYVSHLPAAGEIVLFDRSWYNRAGVERVMGFCTDEQYEEFFRSVPEFERMLTRAGIQV 362 FQRY+SHLPAAGE+VLFDRSWYNRAGVERVMGFC D+QYEEFFR+VPEFE+ML R+GIQ+ Sbjct: 126 FQRYISHLPAAGEMVLFDRSWYNRAGVERVMGFCNDDQYEEFFRTVPEFEKMLVRSGIQL 185 Query: 363 IKYWFSITDEEQHLRFLSRIHDPLKQWKLSPMDLESRRRWEEYTKAKEMMLERTHIAEAP 422 IKYWFSI+D+EQ+LRFL RIHDPLKQWKLSPMDLESRRRWE+YTKAKE+MLERTHI EAP Sbjct: 186 IKYWFSISDDEQNLRFLGRIHDPLKQWKLSPMDLESRRRWEDYTKAKEIMLERTHIPEAP 245 Query: 423 WWIVQAVDKKKARLNCIHHLLNQMPYGEVEHAPISLPERERHDDYFRREVSSEILVPEVY 482 WW+V A DKKKARLNCI HLL QM Y EV H I LP+R RH+DY R+ V S I+VP++Y Sbjct: 246 WWVVPADDKKKARLNCIGHLLGQMDYNEVAHPAIVLPQRVRHEDYVRQPVPSNIMVPQIY 305 >ref|YP_004684778.1| hypothetical protein CNE_1c09390 [Cupriavidus necator N-1] gb|AEI76297.1| hypothetical protein CNE_1c09390 [Cupriavidus necator N-1] Length = 305 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 234/299 (78%), Positives = 263/299 (87%) Query: 184 ELVKRVHRELADSYDEEMELELEDRTVDPVTGEFSSAHGSEEKEYRRLYFRELFRLQGEL 243 ELV+R+H E+AD YDEE+ELEL+DR G+ E++ RR YFRELFRLQGEL Sbjct: 7 ELVRRIHNEVADYYDEEIELELDDREASEAFGDPVHLDDEAEQDSRRHYFRELFRLQGEL 66 Query: 244 VKLQDWVVQTGHKVVIVFEGRDAAGKGGVIKRITQRLNPRVARVAALPAPNDRERTQWYF 303 V+LQ WV TGHK+VI+FEGRDAAGKGGVIKRITQRLNPRV RVAALPAPNDRERTQWYF Sbjct: 67 VRLQSWVAATGHKIVIIFEGRDAAGKGGVIKRITQRLNPRVCRVAALPAPNDRERTQWYF 126 Query: 304 QRYVSHLPAAGEIVLFDRSWYNRAGVERVMGFCTDEQYEEFFRSVPEFERMLTRAGIQVI 363 QRYV+HLPAAGEIVLFDRSWYNRAGVERVMGFC+DEQYEEFFRSVPEFE+ML R+GIQVI Sbjct: 127 QRYVAHLPAAGEIVLFDRSWYNRAGVERVMGFCSDEQYEEFFRSVPEFEKMLVRSGIQVI 186 Query: 364 KYWFSITDEEQHLRFLSRIHDPLKQWKLSPMDLESRRRWEEYTKAKEMMLERTHIAEAPW 423 KYWFSIT +EQ LRFLSRIHDPLKQWKLSPMDLES+RRWE+YTKAKE+MLERTHIAEAPW Sbjct: 187 KYWFSITHDEQRLRFLSRIHDPLKQWKLSPMDLESQRRWEDYTKAKEIMLERTHIAEAPW 246 Query: 424 WIVQAVDKKKARLNCIHHLLNQMPYGEVEHAPISLPERERHDDYFRREVSSEILVPEVY 482 W+VQA DKK+ARLNCIHHLL+Q+PY EVE + LP RERH+DY R+ V E++VP+VY Sbjct: 247 WVVQADDKKRARLNCIHHLLSQVPYAEVEAPSVVLPGRERHEDYVRQPVPKEMIVPDVY 305 >emb|CBA33652.1| hypothetical protein Csp_B20130 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 323 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 229/301 (76%), Positives = 258/301 (85%) Query: 182 KEELVKRVHRELADSYDEEMELELEDRTVDPVTGEFSSAHGSEEKEYRRLYFRELFRLQG 241 +EE+++R+ ++ DSYDEE+E+EL+D D + S +++K+ RR YFRELFR+QG Sbjct: 23 EEEMIRRIRSDMLDSYDEELEMELDDHNQDELADGLSPELSAQQKQDRRTYFRELFRMQG 82 Query: 242 ELVKLQDWVVQTGHKVVIVFEGRDAAGKGGVIKRITQRLNPRVARVAALPAPNDRERTQW 301 ELVKLQDWVV TGHKVV++FEGRDAAGKGG IKRITQRLNPRV RVAALPAPNDRERTQW Sbjct: 83 ELVKLQDWVVATGHKVVVIFEGRDAAGKGGAIKRITQRLNPRVCRVAALPAPNDRERTQW 142 Query: 302 YFQRYVSHLPAAGEIVLFDRSWYNRAGVERVMGFCTDEQYEEFFRSVPEFERMLTRAGIQ 361 YFQRYVSHLPAAGEIVLFDRSWYNRAGVERVMGFC DEQ EEFFR+VPEFE+ML R+GIQ Sbjct: 143 YFQRYVSHLPAAGEIVLFDRSWYNRAGVERVMGFCNDEQLEEFFRTVPEFEKMLVRSGIQ 202 Query: 362 VIKYWFSITDEEQHLRFLSRIHDPLKQWKLSPMDLESRRRWEEYTKAKEMMLERTHIAEA 421 VIKYWFSI+DEEQH RFL RIHDPLKQWKLSPMDL+SR RWE YT AKE MLERTHI EA Sbjct: 203 VIKYWFSISDEEQHTRFLGRIHDPLKQWKLSPMDLQSRVRWEAYTHAKEAMLERTHIPEA 262 Query: 422 PWWIVQAVDKKKARLNCIHHLLNQMPYGEVEHAPISLPERERHDDYFRREVSSEILVPEV 481 PWW+VQAVDKKKARLNCI HLL QMPY E+ H P+ LPER RH DY R V +E+ VPE+ Sbjct: 263 PWWVVQAVDKKKARLNCIQHLLGQMPYEEIPHPPVELPERVRHQDYERHPVPAEMYVPEI 322 Query: 482 Y 482 Y Sbjct: 323 Y 323 >ref|YP_725508.1| hypothetical protein H16_A0997 [Ralstonia eutropha H16] emb|CAJ92140.1| conserved hypothetical protein [Ralstonia eutropha H16] Length = 305 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 233/299 (77%), Positives = 262/299 (87%) Query: 184 ELVKRVHRELADSYDEEMELELEDRTVDPVTGEFSSAHGSEEKEYRRLYFRELFRLQGEL 243 ELV+R+H E+AD YDEE+ELEL+DR G+ E++ RR YFRELFRLQGEL Sbjct: 7 ELVRRIHNEVADYYDEEIELELDDREASEAFGDPVHLDDEAEQDSRRHYFRELFRLQGEL 66 Query: 244 VKLQDWVVQTGHKVVIVFEGRDAAGKGGVIKRITQRLNPRVARVAALPAPNDRERTQWYF 303 V+LQ WV TGHK+VI+FEGRDAAGKGGVIKRITQRLNPRV RVAALPAPNDRERTQWYF Sbjct: 67 VRLQSWVAATGHKIVIIFEGRDAAGKGGVIKRITQRLNPRVCRVAALPAPNDRERTQWYF 126 Query: 304 QRYVSHLPAAGEIVLFDRSWYNRAGVERVMGFCTDEQYEEFFRSVPEFERMLTRAGIQVI 363 QRYV+HLPAAGEIVLFDRSWYNRAGVERVMGFC+D+QYEEFFRSVPEFERML R+GIQV Sbjct: 127 QRYVAHLPAAGEIVLFDRSWYNRAGVERVMGFCSDDQYEEFFRSVPEFERMLVRSGIQVF 186 Query: 364 KYWFSITDEEQHLRFLSRIHDPLKQWKLSPMDLESRRRWEEYTKAKEMMLERTHIAEAPW 423 KYWFSIT +EQ LRFLSRIHDPLKQWKLSPMDLES+RRWE+YTKAKE+MLERTHIAEAPW Sbjct: 187 KYWFSITHDEQRLRFLSRIHDPLKQWKLSPMDLESQRRWEDYTKAKEIMLERTHIAEAPW 246 Query: 424 WIVQAVDKKKARLNCIHHLLNQMPYGEVEHAPISLPERERHDDYFRREVSSEILVPEVY 482 W+VQA DKK+ARLNCIHHLL+Q+PY EVE + LP RERH+DY R+ V E++VP+VY Sbjct: 247 WVVQADDKKRARLNCIHHLLSQVPYAEVEAPSVVLPGRERHEDYVRQPVPKEMIVPDVY 305