BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4928.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777173.1| transcription regulator protein [Herbaspiril... 496 e-138 ref|ZP_07674162.1| transcriptional regulator DarR [Ralstonia sp.... 335 5e-90 ref|YP_001893337.1| AraC family transcriptional regulator [Ralst... 331 1e-88 ref|YP_004499763.1| AraC family transcriptional regulator [Serra... 327 2e-87 ref|ZP_01463683.1| transcriptional regulator, AraC family [Stigm... 325 9e-87 >ref|YP_003777173.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65265.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 330 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 282/318 (88%), Positives = 303/318 (95%) Query: 1 MPARDIAFLIFADCSMLDFTGPLSAFDAANRVSGRALYRITLYSEPGGLIRSSAGAMIQT 60 MP R+ AFLIFADCSMLDFTGPLSAFDAANR++G+ LYR+TLYSEPGG+IRSSAGA+I T Sbjct: 1 MPLRETAFLIFADCSMLDFTGPLSAFDAANRLAGKTLYRLTLYSEPGGMIRSSAGALIHT 60 Query: 61 ERIGRASFDTLVVAGGGAPREGLVSDALRRYILRAASRSRRIAGVCTGAFVLAAAGLLDG 120 ERIGR SFDTL+VAGGGAPREGLVS ALRR++LRAA+RSRRIAG+CTGAFVLAA GLLDG Sbjct: 61 ERIGRTSFDTLIVAGGGAPREGLVSPALRRHVLRAAARSRRIAGICTGAFVLAATGLLDG 120 Query: 121 KRATTHWRMAAKLQQMHPQVKVDSDRIYSCDGKVWTSAGISAGIDLALALIEEDHGAELA 180 KRATTHWRMAAKLQQMHP VKVDSDRIYS DG VWTSAGISAGIDLALALIE+DHG ELA Sbjct: 121 KRATTHWRMAAKLQQMHPAVKVDSDRIYSRDGAVWTSAGISAGIDLALALIEDDHGVELA 180 Query: 181 KSVARELVVYHRRPGGQSQFSALQEMDGGSERIRRALGFAREHLQHELTVDLLAEVACLS 240 +SVARELVVYHRRPGGQSQFSALQEMDGGSERIRRALGFAREHL LTVDLLAEVACLS Sbjct: 181 RSVARELVVYHRRPGGQSQFSALQEMDGGSERIRRALGFAREHLHQALTVDLLAEVACLS 240 Query: 241 RRKFDRSFAAETGQTPARAIEQMRAEAARLRIEQSQDSLESIARATGFGDAERMRRACLR 300 RR+FDR+FAAETGQTPARAIEQMRAEAARLRIEQSQD+LESIARATGFGDA+RMRRACLR Sbjct: 241 RRQFDRAFAAETGQTPARAIEQMRAEAARLRIEQSQDTLESIARATGFGDADRMRRACLR 300 Query: 301 LFGQPPQAMRRLARLDEE 318 LFGQPPQAMRRLAR +++ Sbjct: 301 LFGQPPQAMRRLARAEDD 318 >ref|ZP_07674162.1| transcriptional regulator DarR [Ralstonia sp. 5_7_47FAA] gb|EFP67593.1| transcriptional regulator DarR [Ralstonia sp. 5_7_47FAA] Length = 320 Score = 335 bits (859), Expect = 5e-90, Method: Composition-based stats. Identities = 196/311 (63%), Positives = 243/311 (78%) Query: 4 RDIAFLIFADCSMLDFTGPLSAFDAANRVSGRALYRITLYSEPGGLIRSSAGAMIQTERI 63 R I FL+F CS+LDFTGPL+AFD ANR++ + YRI + SE G ++S+ G ++QT+ + Sbjct: 2 RRIGFLVFPGCSLLDFTGPLTAFDVANRLAAQPAYRIDVLSEGGAQVQSAPGLVMQTQGL 61 Query: 64 GRASFDTLVVAGGGAPREGLVSDALRRYILRAASRSRRIAGVCTGAFVLAAAGLLDGKRA 123 +FDTLV++GG PRE S L ++ AA+ SRR+ VC+GAF LAAAGLLDG+RA Sbjct: 62 DDPAFDTLVISGGNGPREDAFSPRLIAFVREAAAHSRRMTSVCSGAFALAAAGLLDGRRA 121 Query: 124 TTHWRMAAKLQQMHPQVKVDSDRIYSCDGKVWTSAGISAGIDLALALIEEDHGAELAKSV 183 TTHWRMAA LQ+ +P+V+V SD I+ DG VWTSAGIS+GIDLALALIEED G +++++V Sbjct: 122 TTHWRMAALLQRRYPRVQVQSDHIFIHDGPVWTSAGISSGIDLALALIEEDLGVDVSRAV 181 Query: 184 ARELVVYHRRPGGQSQFSALQEMDGGSERIRRALGFAREHLQHELTVDLLAEVACLSRRK 243 ARELVVYHRRPGGQSQFS L E+D S RI RALG+AREHL L VD LAEVA LSRR+ Sbjct: 182 ARELVVYHRRPGGQSQFSTLLELDPASSRIARALGYAREHLHEALDVDRLAEVAHLSRRQ 241 Query: 244 FDRSFAAETGQTPARAIEQMRAEAARLRIEQSQDSLESIARATGFGDAERMRRACLRLFG 303 FDR+F AETGQTPA+AIE++RAE AR R+E +SLE IARA GF D ERMRRA +R+FG Sbjct: 242 FDRAFVAETGQTPAKAIEKLRAEIARPRVEAGDESLEHIARAVGFADPERMRRAFIRVFG 301 Query: 304 QPPQAMRRLAR 314 QPPQ++RR R Sbjct: 302 QPPQSVRRSGR 312 >ref|YP_001893337.1| AraC family transcriptional regulator [Ralstonia pickettii 12J] ref|YP_002983680.1| AraC family transcriptional regulator [Ralstonia pickettii 12D] gb|ACD29910.1| transcriptional regulator, AraC family [Ralstonia pickettii 12J] gb|ACS65008.1| transcriptional regulator, AraC family [Ralstonia pickettii 12D] Length = 320 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 194/312 (62%), Positives = 242/312 (77%) Query: 4 RDIAFLIFADCSMLDFTGPLSAFDAANRVSGRALYRITLYSEPGGLIRSSAGAMIQTERI 63 R I FL+F CS+LDFTGPL+AFD ANR++ YRI + SE G ++S+ G ++QT+ + Sbjct: 2 RRIGFLVFPGCSLLDFTGPLTAFDVANRLAAHPAYRIEVLSEAGAQVQSAPGLVMQTQAL 61 Query: 64 GRASFDTLVVAGGGAPREGLVSDALRRYILRAASRSRRIAGVCTGAFVLAAAGLLDGKRA 123 +FDTLV++GG PR+ S L ++ AA SRR+ VC+GAF LAAAGLLDG+RA Sbjct: 62 DDPAFDTLVISGGNGPRDDAFSPGLIAFVREAAQHSRRMTSVCSGAFALAAAGLLDGRRA 121 Query: 124 TTHWRMAAKLQQMHPQVKVDSDRIYSCDGKVWTSAGISAGIDLALALIEEDHGAELAKSV 183 TTHWRMAA+LQ+ +P+V V +DRI+ DG VWTSAGIS+GIDLALALIE D G +++++V Sbjct: 122 TTHWRMAAQLQRRYPRVHVQADRIFIQDGPVWTSAGISSGIDLALALIEADLGIDVSRAV 181 Query: 184 ARELVVYHRRPGGQSQFSALQEMDGGSERIRRALGFAREHLQHELTVDLLAEVACLSRRK 243 ARELVVYHRRPGGQSQFSAL E+D S RI RAL +AR+HL L VD LAEVA LSRR+ Sbjct: 182 ARELVVYHRRPGGQSQFSALLELDPASTRIARALSYARDHLHEALDVDRLAEVAHLSRRQ 241 Query: 244 FDRSFAAETGQTPARAIEQMRAEAARLRIEQSQDSLESIARATGFGDAERMRRACLRLFG 303 FDR+F AETGQTPA+AIE++RAEAAR R+E +SLE IARA GF D ERMRRA +R+FG Sbjct: 242 FDRAFVAETGQTPAKAIEKLRAEAARPRVEAGNESLEHIARAVGFADPERMRRAFIRVFG 301 Query: 304 QPPQAMRRLARL 315 PPQ++RR RL Sbjct: 302 HPPQSVRRSGRL 313 >ref|YP_004499763.1| AraC family transcriptional regulator [Serratia sp. AS12] ref|YP_004504715.1| AraC family transcriptional regulator [Serratia sp. AS9] gb|AEF44454.1| transcriptional regulator, AraC family [Serratia sp. AS9] gb|AEF49406.1| transcriptional regulator, AraC family [Serratia sp. AS12] gb|AEG27113.1| transcriptional regulator, AraC family [Serratia sp. AS13] Length = 314 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 181/311 (58%), Positives = 235/311 (75%) Query: 4 RDIAFLIFADCSMLDFTGPLSAFDAANRVSGRALYRITLYSEPGGLIRSSAGAMIQTERI 63 ++I F+IF D ++LDF GPL+AFD A++ + YR S+ GG++ S+G + T+ + Sbjct: 2 KNIGFVIFPDFNLLDFAGPLAAFDQADQFTDAPAYRCLPVSQAGGMVIGSSGVAVMTQPL 61 Query: 64 GRASFDTLVVAGGGAPREGLVSDALRRYILRAASRSRRIAGVCTGAFVLAAAGLLDGKRA 123 + FDTL++AGG S AL + + + + RR+A VCTGAF+LAAAGLL+GKRA Sbjct: 62 EDSRFDTLLIAGGRGNVAAAESPALIAMLQQQSRQVRRMASVCTGAFILAAAGLLEGKRA 121 Query: 124 TTHWRMAAKLQQMHPQVKVDSDRIYSCDGKVWTSAGISAGIDLALALIEEDHGAELAKSV 183 TTHW AA+LQQ +P+++VDS+RI+ DG +WTSAGISAGIDLALA+IEED GAE+A +V Sbjct: 122 TTHWFHAARLQQRYPRIRVDSNRIFIRDGALWTSAGISAGIDLALAMIEEDLGAEVAANV 181 Query: 184 ARELVVYHRRPGGQSQFSALQEMDGGSERIRRALGFAREHLQHELTVDLLAEVACLSRRK 243 AR+LVVYHRRPGGQSQ+S L ++ S+RIR AL +AREHL LTV LA+ ACLS R+ Sbjct: 182 ARQLVVYHRRPGGQSQYSLLLALNPSSDRIRSALSYAREHLHQPLTVADLADAACLSERQ 241 Query: 244 FDRSFAAETGQTPARAIEQMRAEAARLRIEQSQDSLESIARATGFGDAERMRRACLRLFG 303 F R F AETGQTPA+ IEQ+R EAAR+RIE+S ++LE IARA GF D ERMRRA +R+FG Sbjct: 242 FGRLFRAETGQTPAKVIEQLRVEAARVRIEESGEALEVIARAVGFSDPERMRRAFIRVFG 301 Query: 304 QPPQAMRRLAR 314 PQAMRRL+R Sbjct: 302 LSPQAMRRLSR 312 >ref|ZP_01463683.1| transcriptional regulator, AraC family [Stigmatella aurantiaca DW4/3-1] ref|YP_003955599.1| AraC family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gb|EAU65578.1| transcriptional regulator, AraC family [Stigmatella aurantiaca DW4/3-1] gb|ADO73772.1| Transcriptional regulator, AraC family [Stigmatella aurantiaca DW4/3-1] Length = 332 Score = 325 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 174/304 (57%), Positives = 226/304 (74%) Query: 4 RDIAFLIFADCSMLDFTGPLSAFDAANRVSGRALYRITLYSEPGGLIRSSAGAMIQTERI 63 RDI L F + +LD TGP S F+ A YR+ SE GG+++SS+G I T+ + Sbjct: 20 RDIGLLAFPEFQILDLTGPASVFEGPGIFEKPAAYRLHPLSEHGGMLKSSSGVEILTQPL 79 Query: 64 GRASFDTLVVAGGGAPREGLVSDALRRYILRAASRSRRIAGVCTGAFVLAAAGLLDGKRA 123 R +FDTL+V GG + S AL +++ AA+ SRR+A VCTGAF+LAAAGLLDG+RA Sbjct: 80 ERTAFDTLLVVGGAGTLVAMESPALLQFVKAAATASRRVASVCTGAFILAAAGLLDGRRA 139 Query: 124 TTHWRMAAKLQQMHPQVKVDSDRIYSCDGKVWTSAGISAGIDLALALIEEDHGAELAKSV 183 TTHWR AA LQ++ P+V+V+++RI+ DG +WTSAG S GIDL+LAL+EED G + +++ Sbjct: 140 TTHWRQAALLQRLFPKVRVEAERIFIQDGSLWTSAGASTGIDLSLALLEEDLGLDASRAT 199 Query: 184 ARELVVYHRRPGGQSQFSALQEMDGGSERIRRALGFAREHLQHELTVDLLAEVACLSRRK 243 AR+LVVYHRRPGGQSQFS L +++ S+RIR AL FAREHL LTV+ LA+ ACLS R+ Sbjct: 200 ARDLVVYHRRPGGQSQFSTLLDLEPASDRIRLALAFAREHLHEPLTVERLAQAACLSPRQ 259 Query: 244 FDRSFAAETGQTPARAIEQMRAEAARLRIEQSQDSLESIARATGFGDAERMRRACLRLFG 303 F R F AETGQTPA+A+E++RAE AR+RIE S + +E IA+ GF D ERMRRAC+RLFG Sbjct: 260 FGREFLAETGQTPAKAVERLRAETARMRIETSTEPIERIAQEVGFSDPERMRRACIRLFG 319 Query: 304 QPPQ 307 QPPQ Sbjct: 320 QPPQ 323