BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4927.p (310 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777172.1| major facilitator superfamily permease [Herb... 289 5e-76 ref|ZP_03269732.1| major facilitator superfamily MFS_1 [Burkhold... 240 2e-61 ref|YP_003603964.1| major facilitator superfamily MFS_1 [Burkhol... 230 2e-58 ref|YP_001893336.1| major facilitator superfamily MFS_1 [Ralston... 228 8e-58 ref|YP_001894277.1| major facilitator superfamily protein [Burkh... 228 8e-58 >ref|YP_003777172.1| major facilitator superfamily permease [Herbaspirillum seropedicae SmR1] gb|ADJ65264.1| permease of the major facilitator superfamily protein [Herbaspirillum seropedicae SmR1] Length = 403 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 225/306 (73%), Positives = 239/306 (78%), Gaps = 16/306 (5%) Query: 1 MAMARPGQGGSAFVWLCVGLTLAGLLGGSVNGASGRAIMAWFAEGERGLAMSIRQTAVPL 60 M A PGQG ++F WLC GL LAGLLGGSVNGASGRAIM WF EGERGLAMSIRQTAVPL Sbjct: 104 MLYALPGQGAASFAWLCAGLMLAGLLGGSVNGASGRAIMGWFGEGERGLAMSIRQTAVPL 163 Query: 61 GGGIGALLLPTLAARAGFGAVYGFLMTLCMTSVALVLLWLREAHEASPSHTA---TAPAM 117 GGG+GALLLPTLAA+AGFGAV+ LM C+ SV LVL WLREA +P+H A A Sbjct: 164 GGGLGALLLPTLAAQAGFGAVFAALMAACLASVGLVLRWLREA-PVAPAHGAAPVVGAAS 222 Query: 118 PALRSPLVWRLALGTGLLCAPQVALISFGGIFLHEVGQAGLLLISVLLTLVQVGAAVARI 177 ALRS LVWRLALG GLLCAPQVAL+SFGGIFL E QA +L ISVLLTLVQ+GAA ARI Sbjct: 223 MALRSKLVWRLALGIGLLCAPQVALLSFGGIFLQESAQASVLAISVLLTLVQLGAAAARI 282 Query: 178 ASGRWTDRRGQRRPYLRACALGSALLFLLLGVSSLSGLSVSLQWLGGVLVVAGVVVSAWH 237 ASGRWTDRRGQRR YLR CAL SA LF LLGV L +LV AGVVVSAWH Sbjct: 283 ASGRWTDRRGQRRDYLRGCALASAALFGLLGV------------LAPLLVAAGVVVSAWH 330 Query: 238 GVAYTELAVAAGPAQVGTALGLGNSCVFGVFFLTAQAIPLLLQWHGWPAVWIVTAAVALL 297 GVAYTELAV AG QVGTALGLGNSCVF VFFL AQAIP LL W GWPAVW+ A VALL Sbjct: 331 GVAYTELAVVAGAGQVGTALGLGNSCVFLVFFLAAQAIPPLLHWQGWPAVWLAIAVVALL 390 Query: 298 VFPLFP 303 V+PLFP Sbjct: 391 VWPLFP 396 >ref|ZP_03269732.1| major facilitator superfamily MFS_1 [Burkholderia sp. H160] gb|EDZ98689.1| major facilitator superfamily MFS_1 [Burkholderia sp. H160] Length = 439 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 153/296 (51%), Positives = 197/296 (66%), Gaps = 14/296 (4%) Query: 29 SVNGASGRAIMAWFAEGERGLAMSIRQTAVPLGGGIGALLLPTLAARAGFGAVYGFLMTL 88 SVNG+SGRA+MAWF EGERGLAMSIRQ AVP GGG+GAL+LP LA+R GF + YG L Sbjct: 134 SVNGSSGRAVMAWFREGERGLAMSIRQCAVPAGGGLGALVLPALASRFGFASAYGGLALA 193 Query: 89 CMTSVALVLLWLRE-----------AHEASPSHTATAPAMPALRSPLVWRLALGTGLLCA 137 C + WL E A A+ S+ +PAM LR +WR+ALG G LC Sbjct: 194 CAITAWFAWCWLHEPAHAHDTVAASAQSANTSNVGASPAMSPLRDIAIWRVALGAGALCV 253 Query: 138 PQVALISFGGIFLHEVGQAGLLLISVLLTLVQVGAAVARIASGRWTDRRGQRRPYLRACA 197 PQ+A+I+FG +FLH+ G+AG+ IS + VQ GAA+AR+ SG WTDRRG RR Y+RAC+ Sbjct: 254 PQIAVITFGTVFLHDFGRAGVFAISATMAAVQTGAAIARVWSGAWTDRRGNRRAYMRACS 313 Query: 198 LGSALLFLLLGVSS-LSGL--SVSLQWLGGVLVVAGVVVSAWHGVAYTELAVAAGPAQVG 254 L +A+LF+LL +++ L G+ + ++ ++V+ GV SAWHGVA+TELA AG + G Sbjct: 314 LLTAVLFVLLALATGLVGMHRAGAVALFALMIVLGGVSASAWHGVAFTELATLAGTRRAG 373 Query: 255 TALGLGNSCVFGVFFLTAQAIPLLLQWHGWPAVWIVTAAVALLVFPLFPALVKPRA 310 TAL +GN+CVF FLT AIP+LL WP VW V +A ALL P+FP RA Sbjct: 374 TALAIGNTCVFLTLFLTPLAIPMLLSIGAWPLVWAVASACALLALPVFPRAASMRA 429 >ref|YP_003603964.1| major facilitator superfamily MFS_1 [Burkholderia sp. CCGE1002] gb|ADG14453.1| major facilitator superfamily MFS_1 [Burkholderia sp. CCGE1002] Length = 449 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 152/306 (49%), Positives = 196/306 (64%), Gaps = 24/306 (7%) Query: 29 SVNGASGRAIMAWFAEGERGLAMSIRQTAVPLGGGIGALLLPTLAARAGFGAVYGFLMTL 88 SVNG+SGRA+MAWF EGERGLAMSIRQTAVP GGG+GAL+LP LA+ GF + Y L Sbjct: 134 SVNGSSGRAVMAWFREGERGLAMSIRQTAVPAGGGLGALVLPVLASHFGFASAYAVLALA 193 Query: 89 CMTSVALVLLWLREAHEASPSHT-----ATAPAM------------PALRSPL----VWR 127 C + WL E A + ATA A P +RSPL +WR Sbjct: 194 CAITAWFAWRWLHEPAHADDTSAVKGARATAAASGRSVDVSNVIAPPPMRSPLRDIAIWR 253 Query: 128 LALGTGLLCAPQVALISFGGIFLHEVGQAGLLLISVLLTLVQVGAAVARIASGRWTDRRG 187 +ALG G LC PQ+A+I+FG +FLH+ G+AG+ IS + VQ GAA+AR+ SG WTDRRG Sbjct: 254 VALGAGALCVPQIAVITFGTVFLHDFGRAGVFAISATMAAVQTGAAIARVWSGAWTDRRG 313 Query: 188 QRRPYLRACALGSALLFLLLGVSS-LSGL--SVSLQWLGGVLVVAGVVVSAWHGVAYTEL 244 RR Y+RAC+L +A+LF+LL +++ + G+ + ++ ++V+ GV SAWHGVA+TEL Sbjct: 314 NRRAYMRACSLLTAVLFVLLALATGIVGMHRAGAVALFALMIVLGGVSASAWHGVAFTEL 373 Query: 245 AVAAGPAQVGTALGLGNSCVFGVFFLTAQAIPLLLQWHGWPAVWIVTAAVALLVFPLFPA 304 A AG + GTAL +GN+CVF F+T AIP LL WP VW V +A ALL P+FP Sbjct: 374 ASLAGTRRAGTALAMGNTCVFLTLFVTPLAIPPLLSIGAWPLVWTVASACALLALPVFPR 433 Query: 305 LVKPRA 310 RA Sbjct: 434 AASTRA 439 >ref|YP_001893336.1| major facilitator superfamily MFS_1 [Ralstonia pickettii 12J] ref|YP_002983679.1| major facilitator superfamily protein [Ralstonia pickettii 12D] gb|ACD29909.1| major facilitator superfamily MFS_1 [Ralstonia pickettii 12J] gb|ACS65007.1| major facilitator superfamily MFS_1 [Ralstonia pickettii 12D] Length = 419 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 158/300 (52%), Positives = 198/300 (66%), Gaps = 8/300 (2%) Query: 13 FVWLCVGLTLAGLLGGSVNGASGRAIMAWFAEGERGLAMSIRQTAVPLGGGIGALLLPTL 72 WL G+ GLLGGSVNG+SGRA+M WF EGERGLAMSIRQTAVPLGGGIGAL+LP+L Sbjct: 117 LTWLAAGMLSVGLLGGSVNGSSGRAVMGWFREGERGLAMSIRQTAVPLGGGIGALVLPSL 176 Query: 73 AARAGFGAVYGFLMTLCMTSVALVLLWLREAHEASPSHTA--TAPAMPALRSPLVWRLAL 130 AA AGF AVYG L C + L LW+ EA A+ + A + LR ++WR+AL Sbjct: 177 AAHAGFAAVYGVLAAACALTAVLTWLWVHEAAPAADAGVARVVSEGPGPLRDVMLWRMAL 236 Query: 131 GTGLLCAPQVALISFGGIFLHEVGQAGLLLISVLLTLVQVGAAVARIASGRWTDRRGQRR 190 GLLC PQ A+++F +FL + A +L +S+ + VQ GAAV R+ SGRWTDR G RR Sbjct: 237 AIGLLCVPQGAVVAFATVFLRDFAHADVLTLSLTMAAVQGGAAVMRVWSGRWTDRHGNRR 296 Query: 191 PYLRACALGSALLFLLL-GVSSLSG-LSVSLQWLGGVLVVA----GVVVSAWHGVAYTEL 244 YL ACA SA LF++L GV+ L+G L L + GVLV A G+ VSAWHGV YTE+ Sbjct: 297 AYLLACARLSAALFVVLAGVAWLTGTLHADLAVMRGVLVAAIVAGGICVSAWHGVGYTEM 356 Query: 245 AVAAGPAQVGTALGLGNSCVFGVFFLTAQAIPLLLQWHGWPAVWIVTAAVALLVFPLFPA 304 A AG + GTALGLGN+ F LT+ +P +L W WP VW++ A AL+ + + PA Sbjct: 357 ATLAGAQRAGTALGLGNTGAFAALGLTSLFLPHVLAWSSWPVVWLLAAGCALIAWRVLPA 416 >ref|YP_001894277.1| major facilitator superfamily protein [Burkholderia phytofirmans PsJN] gb|ACD15053.1| major facilitator superfamily MFS_1 [Burkholderia phytofirmans PsJN] Length = 439 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 154/289 (53%), Positives = 195/289 (67%), Gaps = 15/289 (5%) Query: 29 SVNGASGRAIMAWFAEGERGLAMSIRQTAVPLGGGIGALLLPTLAARAGFGAVYGFLMTL 88 SVNG+SGRA+MAWF EGERGLAMSIRQTAVP GGG+GALLLP LA+R GF + Y L Sbjct: 134 SVNGSSGRAVMAWFREGERGLAMSIRQTAVPAGGGLGALLLPVLASRFGFASAYSVLALA 193 Query: 89 CMTSVALVLLWLREAHEASPS------HTATAPAMPALRSPL----VWRLALGTGLLCAP 138 C + A WL E A TA A MPA SPL +WR+ALG G LC P Sbjct: 194 CAITAAFAWRWLHEPSHADADGAREVRDTAAASGMPARVSPLRDIGIWRVALGAGALCVP 253 Query: 139 QVALISFGGIFLHEVGQAGLLLISVLLTLVQVGAAVARIASGRWTDRRGQRRPYLRACAL 198 Q+A+++FG +FLH+ +AG+L ISV + VQ GAA+AR+ SG WTDRRG RR Y+RAC+L Sbjct: 254 QLAVVTFGTVFLHDFSRAGVLAISVTMAAVQTGAAIARVWSGGWTDRRGNRRAYMRACSL 313 Query: 199 GSALLF----LLLGVSSLSGLSVSLQWLGGVLVVAGVVVSAWHGVAYTELAVAAGPAQVG 254 +A+LF LL GV+ + ++++ + ++V+ GV SAWHGVA+TELA AG ++ G Sbjct: 314 LTAVLFASLALLTGVAGMHHMAMTAVF-AAMVVLGGVSASAWHGVAFTELATLAGTSRAG 372 Query: 255 TALGLGNSCVFGVFFLTAQAIPLLLQWHGWPAVWIVTAAVALLVFPLFP 303 TAL +GN+CVF FLT AIP LL WP VW VT+ AL+ P+FP Sbjct: 373 TALAIGNTCVFLTLFLTPLAIPPLLSIGSWPMVWAVTSVCALVALPVFP 421