BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4926.p (202 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777171.1| transcription regulator protein [Herbaspiril... 320 9e-86 ref|YP_004752169.1| TetR family transcriptional regulator [Colli... 236 1e-60 ref|YP_001584194.1| TetR family transcriptional regulator [Burkh... 206 2e-51 ref|ZP_03569466.1| transcriptional regulator, TetR family [Burkh... 206 2e-51 ref|ZP_04947375.1| Transcriptional regulator [Burkholderia dolos... 204 7e-51 >ref|YP_003777171.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65263.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 201 Score = 320 bits (819), Expect = 9e-86, Method: Composition-based stats. Identities = 167/199 (83%), Positives = 178/199 (89%) Query: 4 MREHYDHNKRHILQAGHALIAQKGYTGVGLAEILAAAQIPKGSFYHYFGSKEQYGRELIE 63 MREHY NKR+IL AG ALIAQKGY+ VGL+EILAAA IPKGSFYHYFGSKEQYGRELIE Sbjct: 1 MREHYGENKRNILMAGRALIAQKGYSSVGLSEILAAAAIPKGSFYHYFGSKEQYGRELIE 60 Query: 64 HYVAGYLDRLDHVLSDRSQGGSARERLLTYWGYWLESQCCEEAEQRCLVVKLSAEVADLS 123 HYVAGYL+ L+ VL D + G SARERLLTYWGYWLESQCC+E EQRCLVVKLSAEVADLS Sbjct: 61 HYVAGYLESLERVLGDPAHGASARERLLTYWGYWLESQCCQELEQRCLVVKLSAEVADLS 120 Query: 124 DDMRQVLHGGTQRFIERIAACIEEGIAEGSLHTVLQPLATATMLYQQWLGASLLSKLGRD 183 +DMRQ LH GTQ FIERIAACI +GIAEGSLHTVL PLATATMLYQQWLGASLLS+L RD Sbjct: 121 EDMRQALHQGTQAFIERIAACIAQGIAEGSLHTVLHPLATATMLYQQWLGASLLSRLSRD 180 Query: 184 RAPMEAAMLVTRHVLVAPQ 202 RAPMEAAMLVTR VLV P+ Sbjct: 181 RAPMEAAMLVTRRVLVLPE 199 >ref|YP_004752169.1| TetR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK61346.1| transcriptional regulator, TetR family [Collimonas fungivorans Ter331] Length = 204 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 124/200 (62%), Positives = 146/200 (73%), Gaps = 2/200 (1%) Query: 4 MREHYDHNKRHILQAGHALIAQKGYTGVGLAEILAAAQIPKGSFYHYFGSKEQYGRELIE 63 MR+ YD KRHIL AG +IA KG++GVGL+EIL AA IPKGSFYHYFGSKEQYGR L+E Sbjct: 1 MRDKYDTTKRHILDAGQRIIAVKGFSGVGLSEILNAAAIPKGSFYHYFGSKEQYGRALME 60 Query: 64 HYVAGYLDRLDHVLSDRSQGGS--ARERLLTYWGYWLESQCCEEAEQRCLVVKLSAEVAD 121 YV YL +D VL Q ARERLL YWG+WL++Q EA +CLVVKLSAEV+D Sbjct: 61 QYVDNYLQAMDEVLQVTLQPAQEPARERLLRYWGHWLDTQSGAEAMDKCLVVKLSAEVSD 120 Query: 122 LSDDMRQVLHGGTQRFIERIAACIEEGIAEGSLHTVLQPLATATMLYQQWLGASLLSKLG 181 LSDDMR L GT + + R+A CI EGIA+GSL L+P TA MLYQ WLGASLL+KL Sbjct: 121 LSDDMRLALCEGTTQVMARLADCIAEGIADGSLRIELEPQKTAQMLYQLWLGASLLAKLQ 180 Query: 182 RDRAPMEAAMLVTRHVLVAP 201 RDR+ +E AM VT ++L P Sbjct: 181 RDRSALENAMDVTLNILAPP 200 >ref|YP_001584194.1| TetR family transcriptional regulator [Burkholderia multivorans ATCC 17616] ref|YP_001948678.1| TetR family transcriptional regulator [Burkholderia multivorans ATCC 17616] ref|ZP_03583026.1| transcriptional regulator, TetR family [Burkholderia multivorans CGD1] gb|ABX17902.1| transcriptional regulator, TetR family [Burkholderia multivorans ATCC 17616] dbj|BAG46142.1| TetR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gb|EEE03199.1| transcriptional regulator, TetR family [Burkholderia multivorans CGD1] Length = 206 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 100/190 (52%), Positives = 133/190 (70%), Gaps = 2/190 (1%) Query: 12 KRHILQAGHALIAQKGYTGVGLAEILAAAQIPKGSFYHYFGSKEQYGRELIEHYVAGYLD 71 ++HIL ++ KG++ VGL EILAAA IPKGSFYHYFGSKE +G L+E Y GYL+ Sbjct: 10 RQHILNIAKPIMLHKGFSAVGLNEILAAAGIPKGSFYHYFGSKEAFGEALLESYFEGYLE 69 Query: 72 RLDHVLSDRSQGGSARERLLTYWGYWLESQCCEEAEQRCLVVKLSAEVADLSDDMRQVLH 131 LD++ Q G+ ER++TYW WL +QC ++ E +CL VKL AEV+DLS+ MR VL Sbjct: 70 HLDNLF--ERQPGTGAERMMTYWSNWLHTQCADDPEGKCLAVKLGAEVSDLSEAMRAVLR 127 Query: 132 GGTQRFIERIAACIEEGIAEGSLHTVLQPLATATMLYQQWLGASLLSKLGRDRAPMEAAM 191 GT + +ER+AACIE G+A+GSL + P TA +LY+ WLGA+LL K+ R+R P+E AM Sbjct: 128 RGTSQIVERLAACIEAGLADGSLRGIEDPPHTAALLYELWLGATLLEKIHRNRKPLETAM 187 Query: 192 LVTRHVLVAP 201 TR +L P Sbjct: 188 AATRQLLNLP 197 >ref|ZP_03569466.1| transcriptional regulator, TetR family [Burkholderia multivorans CGD2M] ref|ZP_03576110.1| transcriptional regulator, TetR family [Burkholderia multivorans CGD2] gb|EEE09453.1| transcriptional regulator, TetR family [Burkholderia multivorans CGD2] gb|EEE15373.1| transcriptional regulator, TetR family [Burkholderia multivorans CGD2M] Length = 206 Score = 206 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 100/190 (52%), Positives = 133/190 (70%), Gaps = 2/190 (1%) Query: 12 KRHILQAGHALIAQKGYTGVGLAEILAAAQIPKGSFYHYFGSKEQYGRELIEHYVAGYLD 71 ++HIL ++ KG++ VGL EILAAA IPKGSFYHYFGSKE +G L+E Y GYL+ Sbjct: 10 RQHILNIAKPIMLHKGFSAVGLNEILAAAGIPKGSFYHYFGSKEAFGEALLESYFEGYLE 69 Query: 72 RLDHVLSDRSQGGSARERLLTYWGYWLESQCCEEAEQRCLVVKLSAEVADLSDDMRQVLH 131 LD++ Q G+ ER++TYW WL +QC ++ E +CL VKL AEV+DLS+ MR VL Sbjct: 70 HLDNLF--ERQPGTGAERMMTYWSNWLHTQCADDPEGKCLAVKLGAEVSDLSEAMRAVLR 127 Query: 132 GGTQRFIERIAACIEEGIAEGSLHTVLQPLATATMLYQQWLGASLLSKLGRDRAPMEAAM 191 GT + +ER+AACIE G+A+GSL + P TA +LY+ WLGA+LL K+ R+R P+E AM Sbjct: 128 RGTSQIVERLAACIEAGLADGSLRGIEDPSHTAALLYELWLGATLLEKIHRNRKPLETAM 187 Query: 192 LVTRHVLVAP 201 TR +L P Sbjct: 188 AATRQLLNLP 197 >ref|ZP_04947375.1| Transcriptional regulator [Burkholderia dolosa AUO158] gb|EAY70546.1| Transcriptional regulator [Burkholderia dolosa AUO158] Length = 206 Score = 204 bits (519), Expect = 7e-51, Method: Composition-based stats. Identities = 104/190 (54%), Positives = 134/190 (70%), Gaps = 2/190 (1%) Query: 12 KRHILQAGHALIAQKGYTGVGLAEILAAAQIPKGSFYHYFGSKEQYGRELIEHYVAGYLD 71 ++HIL ++ KG++ VGL EILAAA IPKGSFYHYFGSKE +G L+E Y GYL+ Sbjct: 10 RQHILNIAKPIMLHKGFSAVGLNEILAAAGIPKGSFYHYFGSKEAFGEALLESYFEGYLE 69 Query: 72 RLDHVLSDRSQGGSARERLLTYWGYWLESQCCEEAEQRCLVVKLSAEVADLSDDMRQVLH 131 LD++L + Q G+ ERLLTYWG WL +QC ++ E +CL VKL AEV+DLS+ MR VL Sbjct: 70 HLDNLL--KRQPGTGAERLLTYWGNWLHTQCADDPEGKCLAVKLGAEVSDLSEAMRAVLR 127 Query: 132 GGTQRFIERIAACIEEGIAEGSLHTVLQPLATATMLYQQWLGASLLSKLGRDRAPMEAAM 191 GT + IER+A IE +A+GSL V P TA +LY+ WLGA+LL K+ RDR P+E AM Sbjct: 128 RGTGQIIERLAGGIEAALADGSLSGVDDPAYTAAILYELWLGATLLEKIHRDRKPLERAM 187 Query: 192 LVTRHVLVAP 201 + TR +L P Sbjct: 188 VETRRLLNLP 197