BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4924.p (336 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777169.1| coenzyme F420-dependent N5,N10-methylene tet... 619 e-175 ref|YP_299735.1| luciferase-like protein [Ralstonia eutropha JMP... 474 e-132 ref|YP_001796587.1| monooxygenase [Cupriavidus taiwanensis LMG 1... 472 e-131 ref|YP_588064.1| monooxygenase [Cupriavidus metallidurans CH34] ... 464 e-129 ref|YP_728312.1| coenzyme F420-dependent N5,N10-methylene tetrah... 459 e-127 >ref|YP_003777169.1| coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase [Herbaspirillum seropedicae SmR1] gb|ADJ65261.1| coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase protein [Herbaspirillum seropedicae SmR1] Length = 336 Score = 619 bits (1597), Expect = e-175, Method: Composition-based stats. Identities = 313/336 (93%), Positives = 329/336 (97%) Query: 1 MIPFSVLDLSPINQGSTAAQAFNNSKELAQRAEALGYKRYWLAEHHNMPGIASAATSLVI 60 MIPFSVLDLSPINQGSTAAQAFNNSKELAQRAEALGY RYWLAEHHNMPGIASAAT+LVI Sbjct: 1 MIPFSVLDLSPINQGSTAAQAFNNSKELAQRAEALGYHRYWLAEHHNMPGIASAATALVI 60 Query: 61 SHVAANTKTIRVGSGGIMLPNHSPLVIAEQFGTLESLYPGRIDLGLGRAPGSDQRTARAL 120 SHVAANT++IRVGSGGIMLPNHSPLVIAEQFGTLESLYPGRIDLGLGRAPGSDQRTARAL Sbjct: 61 SHVAANTRSIRVGSGGIMLPNHSPLVIAEQFGTLESLYPGRIDLGLGRAPGSDQRTARAL 120 Query: 121 RRHMGGDTADNFPQDVIELQEYFDEPSDYQNLRAVPGSGLKVPIWLLGSSMFSAQLAAEL 180 RRHMGGDTAD FPQDV ELQ+YFD+P+DYQ LRAVPG+GLKVPIWLLGSSMFSAQLAAEL Sbjct: 121 RRHMGGDTADTFPQDVQELQDYFDDPADYQTLRAVPGAGLKVPIWLLGSSMFSAQLAAEL 180 Query: 181 GLPFAFASHFAPGFMKSAVQIYRERFKPSATLKKPYVMLALNVFAADTQREAERLFTSLQ 240 GLPFAFASHFAPGFMKSAVQIYRERFKPSATLKKPYVMLALNVFAADTQREAERLFTSLQ Sbjct: 181 GLPFAFASHFAPGFMKSAVQIYRERFKPSATLKKPYVMLALNVFAADTQREAERLFTSLQ 240 Query: 241 QQFLNLIRGTPGQLRPPVDDIDALWQPGEQAHVERSLSCAVVGDRETVEEGLQAFIDEHA 300 QQF+NLIRGTPGQLRPPVDDIDALWQPGEQAHV RSL+CAVVGDR+ V++GLQAF+DEHA Sbjct: 241 QQFMNLIRGTPGQLRPPVDDIDALWQPGEQAHVARSLACAVVGDRQAVQDGLQAFMDEHA 300 Query: 301 PDELIITAQIFDHAARLHSFEIAAQAREALKESVTI 336 PDELIITAQIFDHAARLHSFEIAA+AR+AL+E VTI Sbjct: 301 PDELIITAQIFDHAARLHSFEIAAEARQALREPVTI 336 >ref|YP_299735.1| luciferase-like protein [Ralstonia eutropha JMP134] gb|AAZ64891.1| luciferase-like protein [Ralstonia eutropha JMP134] Length = 337 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 237/333 (71%), Positives = 275/333 (82%) Query: 2 IPFSVLDLSPINQGSTAAQAFNNSKELAQRAEALGYKRYWLAEHHNMPGIASAATSLVIS 61 IP+SVLDL+PI QGS A QA NS +LAQ AE LGY+R+WLAEHHNMPGIASAAT+++I Sbjct: 5 IPYSVLDLAPIAQGSDAGQAMRNSLDLAQHAERLGYRRFWLAEHHNMPGIASAATAVLIG 64 Query: 62 HVAANTKTIRVGSGGIMLPNHSPLVIAEQFGTLESLYPGRIDLGLGRAPGSDQRTARALR 121 +VA T TIRVGSGG+MLPNHSPLV+AEQFGTL SLYPGRIDLGLGRAPG+DQ TARALR Sbjct: 65 YVANGTSTIRVGSGGVMLPNHSPLVVAEQFGTLASLYPGRIDLGLGRAPGTDQTTARALR 124 Query: 122 RHMGGDTADNFPQDVIELQEYFDEPSDYQNLRAVPGSGLKVPIWLLGSSMFSAQLAAELG 181 R + DTAD FPQDV ELQ YFD+ Q LRAVPG+GLKVP+WLLGSS+FSAQL+A +G Sbjct: 125 RQLSHDTADTFPQDVEELQAYFDDVRPGQRLRAVPGAGLKVPLWLLGSSLFSAQLSAAMG 184 Query: 182 LPFAFASHFAPGFMKSAVQIYRERFKPSATLKKPYVMLALNVFAADTQREAERLFTSLQQ 241 LPFAFASHFAPGFM+ AV +YR F+PSA L +PYVML LNVFAA+T EA RLF+SLQQ Sbjct: 185 LPFAFASHFAPGFMRQAVDLYRRTFRPSAQLDRPYVMLGLNVFAAETSDEARRLFSSLQQ 244 Query: 242 QFLNLIRGTPGQLRPPVDDIDALWQPGEQAHVERSLSCAVVGDRETVEEGLQAFIDEHAP 301 QFL L+RGTPGQLRPPVDDI++LW E H+ RSL+C+VVGD E V G+Q F+D+ P Sbjct: 245 QFLALVRGTPGQLRPPVDDIESLWNESEADHIRRSLACSVVGDPEAVRAGMQRFVDDLHP 304 Query: 302 DELIITAQIFDHAARLHSFEIAAQAREALKESV 334 DEL++T QI+DHAARL SFEIAA A L +V Sbjct: 305 DELMLTGQIYDHAARLRSFEIAADAARTLAPAV 337 >ref|YP_001796587.1| monooxygenase [Cupriavidus taiwanensis LMG 19424] emb|CAP63350.1| putative monooxygenase with luciferase-like ATPase activity, homolog of E.coli yhbW [Cupriavidus taiwanensis LMG 19424] Length = 346 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 237/333 (71%), Positives = 275/333 (82%) Query: 2 IPFSVLDLSPINQGSTAAQAFNNSKELAQRAEALGYKRYWLAEHHNMPGIASAATSLVIS 61 I +SVLDL+PI QGS A QA NS +LA+ AE LGY RYWLAEHHNMPGIASAAT+++I Sbjct: 12 IAYSVLDLAPIPQGSDAGQAMRNSLDLARHAEQLGYHRYWLAEHHNMPGIASAATAVLIG 71 Query: 62 HVAANTKTIRVGSGGIMLPNHSPLVIAEQFGTLESLYPGRIDLGLGRAPGSDQRTARALR 121 +VA T+ IRVGSGG+MLPNHSPLVIAEQFGTL SLYPGRIDLGLGRAPG+DQ TARALR Sbjct: 72 YVANGTQRIRVGSGGVMLPNHSPLVIAEQFGTLASLYPGRIDLGLGRAPGTDQATARALR 131 Query: 122 RHMGGDTADNFPQDVIELQEYFDEPSDYQNLRAVPGSGLKVPIWLLGSSMFSAQLAAELG 181 RH+ D+AD FPQDV ELQ YFD+ Q LRAVPG+GLKVPIWLLGSS+FSAQLAA +G Sbjct: 132 RHLSSDSADTFPQDVEELQAYFDDVRPGQRLRAVPGAGLKVPIWLLGSSLFSAQLAAAMG 191 Query: 182 LPFAFASHFAPGFMKSAVQIYRERFKPSATLKKPYVMLALNVFAADTQREAERLFTSLQQ 241 LPFAFASHFAPGFM+ A+ +YR F+PS TL +PYVML LNVFAADT EA RLF+SLQQ Sbjct: 192 LPFAFASHFAPGFMRQALDLYRRTFRPSETLDRPYVMLGLNVFAADTGDEARRLFSSLQQ 251 Query: 242 QFLNLIRGTPGQLRPPVDDIDALWQPGEQAHVERSLSCAVVGDRETVEEGLQAFIDEHAP 301 QFL L+RGTPGQLRPPVDDI+ALW E H+ RSL+C+VVGD + V G+Q F+++ P Sbjct: 252 QFLALVRGTPGQLRPPVDDIEALWNESEADHIRRSLACSVVGDPDAVRAGMQRFVEDLRP 311 Query: 302 DELIITAQIFDHAARLHSFEIAAQAREALKESV 334 DEL+IT QIFDHAARL SF IAA+A L+ ++ Sbjct: 312 DELMITGQIFDHAARLRSFAIAAEAARTLRPTL 344 >ref|YP_588064.1| monooxygenase [Cupriavidus metallidurans CH34] gb|ABF12795.1| putative monooxygenase with luciferase-like ATPase activity [Cupriavidus metallidurans CH34] Length = 343 Score = 464 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 233/331 (70%), Positives = 273/331 (82%) Query: 1 MIPFSVLDLSPINQGSTAAQAFNNSKELAQRAEALGYKRYWLAEHHNMPGIASAATSLVI 60 M P+S+LDLSPI +GS A QA N+ LAQ AE LGY+R+WLAEHHNMPGIASAAT+++I Sbjct: 6 MTPYSLLDLSPIIEGSDATQAMRNTLSLAQHAERLGYRRFWLAEHHNMPGIASAATAVLI 65 Query: 61 SHVAANTKTIRVGSGGIMLPNHSPLVIAEQFGTLESLYPGRIDLGLGRAPGSDQRTARAL 120 +VA T TIRVGSGGIMLPNHSPLV+AEQFGTL SLYPGRIDLGLGRAPG+DQ TARAL Sbjct: 66 GYVANGTSTIRVGSGGIMLPNHSPLVVAEQFGTLASLYPGRIDLGLGRAPGTDQATARAL 125 Query: 121 RRHMGGDTADNFPQDVIELQEYFDEPSDYQNLRAVPGSGLKVPIWLLGSSMFSAQLAAEL 180 RR + D+AD+FPQDV ELQ YFDE Q +RAVPG+GLKVP+WLLGSS+F AQLAA + Sbjct: 126 RRTLSHDSADSFPQDVEELQAYFDEVRPGQRVRAVPGAGLKVPLWLLGSSLFGAQLAAAM 185 Query: 181 GLPFAFASHFAPGFMKSAVQIYRERFKPSATLKKPYVMLALNVFAADTQREAERLFTSLQ 240 GLPFAFASHFAPGFM+ AV +YR F+PS L +P+VML LNVFAA+T EA RLF+SLQ Sbjct: 186 GLPFAFASHFAPGFMRQAVDLYRRTFRPSEQLDRPHVMLGLNVFAAETDAEARRLFSSLQ 245 Query: 241 QQFLNLIRGTPGQLRPPVDDIDALWQPGEQAHVERSLSCAVVGDRETVEEGLQAFIDEHA 300 QQFL L+RGTPGQL+PPVDDI+ LW E H+ RSL+C+VVGD TV EG+Q F+D+ Sbjct: 246 QQFLALVRGTPGQLKPPVDDIERLWDASEAEHIRRSLACSVVGDPATVREGIQRFVDDLR 305 Query: 301 PDELIITAQIFDHAARLHSFEIAAQAREALK 331 PDEL++T QI+DHAARL SFEIAA A AL+ Sbjct: 306 PDELMLTGQIYDHAARLRSFEIAADAMRALQ 336 >ref|YP_728312.1| coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase [Ralstonia eutropha H16] emb|CAJ94947.1| Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase [Ralstonia eutropha H16] Length = 331 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 231/328 (70%), Positives = 268/328 (81%) Query: 6 VLDLSPINQGSTAAQAFNNSKELAQRAEALGYKRYWLAEHHNMPGIASAATSLVISHVAA 65 +LDL+PI +GS A QA NS +LA+ AE LGY RYWLAEHHNMPGIASAAT+++I +VA Sbjct: 1 MLDLAPIPEGSDAGQAMRNSLDLARHAERLGYHRYWLAEHHNMPGIASAATAVLIGYVAN 60 Query: 66 NTKTIRVGSGGIMLPNHSPLVIAEQFGTLESLYPGRIDLGLGRAPGSDQRTARALRRHMG 125 T+TIRVGSGG+MLPNHSPLVIAEQFGTL SLYPGRIDLGLGRAPG+DQ TARALRRH+ Sbjct: 61 GTRTIRVGSGGVMLPNHSPLVIAEQFGTLASLYPGRIDLGLGRAPGTDQATARALRRHLS 120 Query: 126 GDTADNFPQDVIELQEYFDEPSDYQNLRAVPGSGLKVPIWLLGSSMFSAQLAAELGLPFA 185 D+AD FPQDV ELQ YFD+ Q LRAVPG+GLKVPIWLLGSS+FSAQLAA +GLPFA Sbjct: 121 ADSADTFPQDVEELQAYFDDVRPGQRLRAVPGAGLKVPIWLLGSSLFSAQLAAAMGLPFA 180 Query: 186 FASHFAPGFMKSAVQIYRERFKPSATLKKPYVMLALNVFAADTQREAERLFTSLQQQFLN 245 FASHFAPGFM+ AV +YR F+PS L +PYVML LNVFAA+T +A RLF+SLQQQFL Sbjct: 181 FASHFAPGFMRQAVDLYRRTFRPSEALDRPYVMLGLNVFAAETGDQARRLFSSLQQQFLA 240 Query: 246 LIRGTPGQLRPPVDDIDALWQPGEQAHVERSLSCAVVGDRETVEEGLQAFIDEHAPDELI 305 L+RGTPGQLR PVDDI+ALW E H+ RSL+C+VVGD + V G+Q F+D+ PDEL+ Sbjct: 241 LVRGTPGQLRAPVDDIEALWTESEADHIRRSLACSVVGDPDAVRAGMQRFVDDLRPDELM 300 Query: 306 ITAQIFDHAARLHSFEIAAQAREALKES 333 +T QI DH ARL SF IAA A +LK S Sbjct: 301 LTGQIHDHQARLRSFAIAADAARSLKTS 328