BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4923.p (280 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002942357.1| GntR family transcriptional regulator [Vario... 278 9e-73 ref|ZP_08405043.1| GntR family transcriptional regulator [Hylemo... 273 3e-71 ref|YP_547903.1| GntR family transcriptional regulator [Polaromo... 244 1e-62 ref|YP_001888983.1| GntR family transcriptional regulator [Burkh... 243 2e-62 ref|ZP_06838909.1| transcriptional regulator, GntR family [Burkh... 243 3e-62 >ref|YP_002942357.1| GntR family transcriptional regulator [Variovorax paradoxus S110] gb|ACS17091.1| transcriptional regulator, GntR family [Variovorax paradoxus S110] Length = 255 Score = 278 bits (710), Expect = 9e-73, Method: Composition-based stats. Identities = 156/253 (61%), Positives = 197/253 (77%), Gaps = 2/253 (0%) Query: 27 AAAPTRQSRAGRPRVRHDDLADPSSLVLEGEAGEDIIVRIYQTVFDSVMSQRLTPGTKLP 86 +++P + + A RP R L + E DI RI+++VF+SV SQRL PGTKLP Sbjct: 4 SSSPPKPATAPRPTRRK--LPPTGGAAAKNEGNGDIEERIFRSVFESVASQRLAPGTKLP 61 Query: 87 EAALCELFGVGRTVVQKALQKLAHEHIVELRPNRGAVVAMPTPEETREIFEARRALEGAI 146 EA+LCELFGV R +V+K LQ+LAH+HIVELRPNRGA+VAMP+PEETR+IFEARRALE A+ Sbjct: 62 EASLCELFGVSRALVRKVLQRLAHDHIVELRPNRGAIVAMPSPEETRQIFEARRALEAAL 121 Query: 147 MRLAVRNATRADLAKLRRQLKEEHQVMHSYAQTHWARLASSFHMRVAELSRNATLQRYLG 206 +R+AVRNATRA++A+LRR LK+EH MH YAQ WARLAS+FH+RVA+L+RN L+RYL Sbjct: 122 VRMAVRNATRAEVAELRRHLKQEHAAMHRYAQPEWARLASTFHLRVAKLARNPILERYLS 181 Query: 207 ELVSRCSLIVALHEPAGYAACEHDEHTHIVDLIERGDSEGAVAAMEAHLVSLEEHIHLVS 266 EL+SRCSLIVAL+EP G A+CEH EH +VD I RGD++ AV MEAHL+ LE++I L Sbjct: 182 ELMSRCSLIVALYEPPGNASCEHGEHADVVDAIARGDADEAVRLMEAHLLVLEKNIALDR 241 Query: 267 EKSGNSLARMLGM 279 SG SL +MLG+ Sbjct: 242 PASGRSLGQMLGL 254 >ref|ZP_08405043.1| GntR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gb|EGI77664.1| GntR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 277 Score = 273 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 161/280 (57%), Positives = 194/280 (69%), Gaps = 11/280 (3%) Query: 6 PRKTAKPTSRTGKSQEHATKPAAAPT------RQSRAGRPRVRHDDLADPSSLVLEGEAG 59 P+ T + AT+ A APT +S A P + D AD GE Sbjct: 2 PKSTESRAPASKAGTRRATRTAGAPTVTVNGKGRSPAAAPALDPDTSADQL-----GEDS 56 Query: 60 EDIIVRIYQTVFDSVMSQRLTPGTKLPEAALCELFGVGRTVVQKALQKLAHEHIVELRPN 119 DI RIYQ VFDSVMSQRL PGTKLPEA LCELF V R+VV+K LQKLAH+HIV+LRPN Sbjct: 57 ADIEARIYQAVFDSVMSQRLKPGTKLPEAPLCELFQVSRSVVRKVLQKLAHDHIVQLRPN 116 Query: 120 RGAVVAMPTPEETREIFEARRALEGAIMRLAVRNATRADLAKLRRQLKEEHQVMHSYAQT 179 RGA+VA+PT EETR+IFEARRALE A++RL A+ DL LR QL+ EH+ MH + Q Sbjct: 117 RGAIVAVPTREETRQIFEARRALEAAVVRLVAERASARDLKGLREQLRAEHEAMHRFDQP 176 Query: 180 HWARLASSFHMRVAELSRNATLQRYLGELVSRCSLIVALHEPAGYAACEHDEHTHIVDLI 239 WARLAS++H+R+AELS N LQRYL E+VSRCSLIVA+H+P G AACEHDEH IVD I Sbjct: 177 AWARLASAYHLRLAELSGNDILQRYLAEIVSRCSLIVAVHQPPGNAACEHDEHERIVDCI 236 Query: 240 ERGDSEGAVAAMEAHLVSLEEHIHLVSEKSGNSLARMLGM 279 +GD+EGAV M+ HL LE+H+ LVS SLA++LG+ Sbjct: 237 AQGDAEGAVKLMDQHLRDLEQHLMLVSPGDEKSLAKLLGL 276 >ref|YP_547903.1| GntR family transcriptional regulator [Polaromonas sp. JS666] gb|ABE43005.1| transcriptional regulator, GntR family [Polaromonas sp. JS666] Length = 248 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 134/215 (62%), Positives = 163/215 (75%) Query: 65 RIYQTVFDSVMSQRLTPGTKLPEAALCELFGVGRTVVQKALQKLAHEHIVELRPNRGAVV 124 RIY +VFDSVM+QR+ PGTKLPE ALCELF V R V+K LQ+LAH+HIV+LRPNRGAVV Sbjct: 33 RIYHSVFDSVMNQRIAPGTKLPEQALCELFSVNRATVRKVLQRLAHDHIVDLRPNRGAVV 92 Query: 125 AMPTPEETREIFEARRALEGAIMRLAVRNATRADLAKLRRQLKEEHQVMHSYAQTHWARL 184 A PTPEETR+IF+ARR LE AI+ L + T+A++ LR+QL++EH +H Q WARL Sbjct: 93 AAPTPEETRQIFQARRLLEAAIVPLVAQRITKAEILLLRKQLRDEHAALHRADQPAWARL 152 Query: 185 ASSFHMRVAELSRNATLQRYLGELVSRCSLIVALHEPAGYAACEHDEHTHIVDLIERGDS 244 AS+FH+R+AELS NA L YL ELVSRCSLIVAL+EP G AACEHDEH IVD +E G+ Sbjct: 153 ASTFHLRLAELSGNAVLHGYLHELVSRCSLIVALYEPPGNAACEHDEHARIVDYLENGEP 212 Query: 245 EGAVAAMEAHLVSLEEHIHLVSEKSGNSLARMLGM 279 AV M HL+ LE I L ++ SLA+MLG+ Sbjct: 213 AKAVRVMNEHLLDLERRICLDKPQAEKSLAQMLGL 247 >ref|YP_001888983.1| GntR family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD19613.1| transcriptional regulator, GntR family [Burkholderia phytofirmans PsJN] Length = 250 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 128/219 (58%), Positives = 162/219 (73%) Query: 61 DIIVRIYQTVFDSVMSQRLTPGTKLPEAALCELFGVGRTVVQKALQKLAHEHIVELRPNR 120 D+ RIYQ++FD V++ RLTPGTKLPE LC+LFGVGR VV++ L+KLA++ IV LRPN+ Sbjct: 19 DLDTRIYQSIFDGVLNHRLTPGTKLPEPELCQLFGVGRAVVRRVLEKLAYDGIVVLRPNK 78 Query: 121 GAVVAMPTPEETREIFEARRALEGAIMRLAVRNATRADLAKLRRQLKEEHQVMHSYAQTH 180 GAV+A PTPEETREIFEARR++E ++ LAV+ A D+ LR+QL EH+ MH + Q Sbjct: 79 GAVIAEPTPEETREIFEARRSVERMLVELAVQRANAKDIKALRQQLASEHEAMHRFDQPS 138 Query: 181 WARLASSFHMRVAELSRNATLQRYLGELVSRCSLIVALHEPAGYAACEHDEHTHIVDLIE 240 WA LAS FHMR+A L+ N+ LQ YL ELVSRCSLIV ++EP G+A CEH EH IVD IE Sbjct: 139 WATLASGFHMRIAALAGNSILQNYLKELVSRCSLIVGVYEPPGHAPCEHAEHAAIVDCIE 198 Query: 241 RGDSEGAVAAMEAHLVSLEEHIHLVSEKSGNSLARMLGM 279 D+ GA+A MEAHL LEE I + SL ++LG+ Sbjct: 199 ARDAAGAMAHMEAHLRDLEERIETSRMRGEKSLGQLLGI 237 >ref|ZP_06838909.1| transcriptional regulator, GntR family [Burkholderia sp. Ch1-1] gb|EFG73355.1| transcriptional regulator, GntR family [Burkholderia sp. Ch1-1] Length = 244 Score = 243 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 128/219 (58%), Positives = 161/219 (73%) Query: 61 DIIVRIYQTVFDSVMSQRLTPGTKLPEAALCELFGVGRTVVQKALQKLAHEHIVELRPNR 120 D+ RIYQ++FD V++ RLTPGTKLPE LC+LFGVGR VV++ L+KLA++ IV LRPN+ Sbjct: 19 DLDARIYQSIFDGVLNHRLTPGTKLPEPELCQLFGVGRAVVRRVLEKLAYDGIVVLRPNK 78 Query: 121 GAVVAMPTPEETREIFEARRALEGAIMRLAVRNATRADLAKLRRQLKEEHQVMHSYAQTH 180 GAV+A PTPEETREIFEARR++E ++ LAV+ A D+ LR+QL EH MH + Q Sbjct: 79 GAVIAEPTPEETREIFEARRSVERMLVELAVQRANAGDIKALRQQLASEHDAMHRFDQPS 138 Query: 181 WARLASSFHMRVAELSRNATLQRYLGELVSRCSLIVALHEPAGYAACEHDEHTHIVDLIE 240 WA LAS FHMR+A L+ N+ LQ YL ELVSRCSLIV ++EP G+A CEH EH IVD IE Sbjct: 139 WATLASGFHMRIAALAGNSILQNYLKELVSRCSLIVGVYEPPGHAPCEHAEHAAIVDCIE 198 Query: 241 RGDSEGAVAAMEAHLVSLEEHIHLVSEKSGNSLARMLGM 279 D+ GA+A MEAHL LEE I + SL ++LG+ Sbjct: 199 ARDAAGAMAHMEAHLRDLEERIETSRMRGEKSLGQLLGI 237