BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4920.p         (159 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08407422.1| hypothetical protein HGR_16185 [Hylemonella g...   204   5e-51
ref|YP_004152786.1| hypothetical protein Varpa_0453 [Variovorax ...   196   8e-49
ref|YP_002942359.1| hypothetical protein Vapar_0430 [Variovorax ...   191   4e-47
ref|YP_485697.1| hypothetical protein RPB_2080 [Rhodopseudomonas...   148   3e-34
ref|ZP_01035702.1| hypothetical protein ROS217_05959 [Roseovariu...   142   1e-32

>ref|ZP_08407422.1| hypothetical protein HGR_16185 [Hylemonella gracilis ATCC 19624]
 gb|EGI75451.1| hypothetical protein HGR_16185 [Hylemonella gracilis ATCC 19624]
          Length = 134

 Score =  204 bits (518), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 97/132 (73%), Positives = 110/132 (83%)

Query: 28  PYDPAALVDEYLRVLMIPDPVAARRFVSPELKIRFTGGREMIDPAQCAAFNATRYGWVKK 87
           P  PAA+VDEYLR+LMIPDP AA +F++PEL+IRFTG R M  PA+CAAFNATRY WVKK
Sbjct: 3   PPTPAAIVDEYLRLLMIPDPAAASQFIAPELRIRFTGARSMQAPAECAAFNATRYQWVKK 62

Query: 88  RFEGTEVVAGATVEQAIVYNRGTLFGVWPDGEAFEGNRYVDRYVIRHGLIVQMDVWNDSA 147
           + E TE VAG T E  +VY+ GTL+GVWPDG  FEGNRYVDRYV++HGLI QMDVWNDSA
Sbjct: 63  KVEATETVAGGTSEHTVVYSLGTLYGVWPDGTPFEGNRYVDRYVVQHGLITQMDVWNDSA 122

Query: 148 ERLLVRAGLAEL 159
           E LLVRAGLA L
Sbjct: 123 EWLLVRAGLATL 134


>ref|YP_004152786.1| hypothetical protein Varpa_0453 [Variovorax paradoxus EPS]
 gb|ADU34675.1| hypothetical protein Varpa_0453 [Variovorax paradoxus EPS]
          Length = 137

 Score =  196 bits (499), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 93/134 (69%), Positives = 108/134 (80%)

Query: 26  PLPYDPAALVDEYLRVLMIPDPVAARRFVSPELKIRFTGGREMIDPAQCAAFNATRYGWV 85
           P P DPAA+VDE+LR++MIPDP +A RF +P+++IRFTG REM  P   +AFNA RY WV
Sbjct: 4   PAPLDPAAIVDEFLRLVMIPDPQSASRFTAPDIRIRFTGNREMHAPGDTSAFNAKRYAWV 63

Query: 86  KKRFEGTEVVAGATVEQAIVYNRGTLFGVWPDGEAFEGNRYVDRYVIRHGLIVQMDVWND 145
           KK+ E TE VAG T E  +VY+ GTL+G WPDG AFEGNRYVDRYV+ HGLIVQMDVWND
Sbjct: 64  KKKIERTETVAGGTPEATVVYSLGTLYGAWPDGTAFEGNRYVDRYVVSHGLIVQMDVWND 123

Query: 146 SAERLLVRAGLAEL 159
           SAE LLVRAGLA L
Sbjct: 124 SAEWLLVRAGLAVL 137


>ref|YP_002942359.1| hypothetical protein Vapar_0430 [Variovorax paradoxus S110]
 gb|ACS17093.1| conserved hypothetical protein [Variovorax paradoxus S110]
          Length = 146

 Score =  191 bits (484), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 90/132 (68%), Positives = 107/132 (81%)

Query: 28  PYDPAALVDEYLRVLMIPDPVAARRFVSPELKIRFTGGREMIDPAQCAAFNATRYGWVKK 87
           P  PA +VDE+LR++MIPDP +A RF +P+++IRFTG REM  P   +AFNA RY WVKK
Sbjct: 15  PSTPAEVVDEFLRLVMIPDPQSASRFTAPDIRIRFTGNREMQAPGDTSAFNAKRYAWVKK 74

Query: 88  RFEGTEVVAGATVEQAIVYNRGTLFGVWPDGEAFEGNRYVDRYVIRHGLIVQMDVWNDSA 147
           + E TEVVAG T E+ +VY+ GTL+G WPDG AFEGNRYVDRYV+RHGLI +MDVWNDSA
Sbjct: 75  KIERTEVVAGGTPEETVVYSLGTLYGAWPDGTAFEGNRYVDRYVVRHGLISRMDVWNDSA 134

Query: 148 ERLLVRAGLAEL 159
           E LLVRAGLA L
Sbjct: 135 EWLLVRAGLAVL 146


>ref|YP_485697.1| hypothetical protein RPB_2080 [Rhodopseudomonas palustris HaA2]
 gb|ABD06786.1| hypothetical protein RPB_2080 [Rhodopseudomonas palustris HaA2]
          Length = 149

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 73/125 (58%), Positives = 90/125 (72%), Gaps = 2/125 (1%)

Query: 32  AALVDEYLRVLMIPDPVAARRFVSPELKIRFTGGREMIDPAQCAAFNATRYGWVKKRFEG 91
           AALV+ +L   M+PDP  A  F++P++ I FTGGR+   P +  AFNA RY WVKK+ E 
Sbjct: 25  AALVERFLVASMVPDPETAGTFMAPDVAITFTGGRKFQHPREATAFNAGRYKWVKKKMER 84

Query: 92  TEVVAGATVEQAIVYNRGTLFGVWPDGEAFEGNRYVDRYVIRHGLIVQMDVWNDSAERLL 151
           T+V  G    + IVYN GTL+G WPDG  FEGNRYVDR+V+R G IV+MDVWNDSAERLL
Sbjct: 85  TDVAPGNG--ETIVYNTGTLYGEWPDGTPFEGNRYVDRFVVRDGKIVKMDVWNDSAERLL 142

Query: 152 VRAGL 156
            R G+
Sbjct: 143 TRHGI 147


>ref|ZP_01035702.1| hypothetical protein ROS217_05959 [Roseovarius sp. 217]
 gb|EAQ25867.1| hypothetical protein ROS217_05959 [Roseovarius sp. 217]
          Length = 141

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/137 (51%), Positives = 89/137 (64%)

Query: 22  TTLPPLPYDPAALVDEYLRVLMIPDPVAARRFVSPELKIRFTGGREMIDPAQCAAFNATR 81
           T +P       ALV+ YL + MIPDPVAA  ++S   ++ FTGGR    PAQ AAFNA R
Sbjct: 2   TQIPDPLTAAKALVESYLDLSMIPDPVAASAYLSEGFELVFTGGRRFSGPAQSAAFNAKR 61

Query: 82  YGWVKKRFEGTEVVAGATVEQAIVYNRGTLFGVWPDGEAFEGNRYVDRYVIRHGLIVQMD 141
           Y WVKKRF  T+           VYN G L+G W DG AFE NRY+D++++R G +++ D
Sbjct: 62  YAWVKKRFLRTDAALDPDTGDVHVYNTGYLYGEWHDGTAFETNRYMDKFIVRDGKLIRTD 121

Query: 142 VWNDSAERLLVRAGLAE 158
           VWNDSAE LL +AGLAE
Sbjct: 122 VWNDSAEMLLAKAGLAE 138