BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4919.p (394 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08407423.1| extracellular ligand-binding receptor [Hylemo... 600 e-169 ref|ZP_06684920.1| ABC superfamily ATP binding cassette transpor... 579 e-163 gb|EFV82026.1| twin-arginine translocation pathway signal [Achro... 574 e-161 ref|ZP_08628922.1| branched-chain amino acid ABC transporter ami... 507 e-141 ref|YP_001189316.1| extracellular ligand-binding receptor [Pseud... 491 e-136 >ref|ZP_08407423.1| extracellular ligand-binding receptor [Hylemonella gracilis ATCC 19624] gb|EGI75452.1| extracellular ligand-binding receptor [Hylemonella gracilis ATCC 19624] Length = 397 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 317/389 (81%), Positives = 355/389 (91%) Query: 4 LTRRTLIAAAAATLAAALSPLALAADPIKIGLVTALSGQSAQAGEALTRGMSIAIDEINA 63 L RR L+AA + AAA+S +LAA+PIKIGLVTALSGQSA AGEA+TRGM +AIDEINA Sbjct: 8 LGRRGLLAAGLSLAAAAVSAPSLAAEPIKIGLVTALSGQSALAGEAITRGMQLAIDEINA 67 Query: 64 KGGLLGGRKLELVRRDDEGNPAKGVVAARELIFKEKVTVLFGGLDTPVSMAIVPIINQEK 123 KGGLLGGRKLELVRRDDE NPAKGVVAARELI++EKV V+FGGLDTPVSMAIVP+INQEK Sbjct: 68 KGGLLGGRKLELVRRDDEANPAKGVVAARELIYREKVAVIFGGLDTPVSMAIVPLINQEK 127 Query: 124 VPFVGPWAAGTGVTKNGANPNYAFRVSAVDELVDKAMLNYAQKTFKSSKAGLILVNNPWG 183 VPF+GPWAAGTG+TKNGANPN+AFRVSAVDE+VD ML YAQKTFK++K GLILVNNPWG Sbjct: 128 VPFMGPWAAGTGITKNGANPNFAFRVSAVDEIVDVGMLAYAQKTFKTAKPGLILVNNPWG 187 Query: 184 ESNEKGIVAALAEKGLKPAGIEKFEASDVDVVPQLSRLKAAGADTLYLVGNVGPSAQVVK 243 ESNEKG+ AA+A KG+ P GIEK+EA+DVD+VPQL+RLKAAGADTL+LVGNVGPSAQVVK Sbjct: 188 ESNEKGLKAAMAAKGVTPVGIEKYEANDVDMVPQLTRLKAAGADTLFLVGNVGPSAQVVK 247 Query: 244 SLDRMGWKVPVVSHWGPAGGRFTELAGPNAKNVHFIQTFSFFGKLSPVGEKVVAELKAKY 303 SL+RMGWKVPVVSHWGPAGGRFTELAGPNAK+VHF+QT+SFFGK SPVGE+V+ + AKY Sbjct: 248 SLERMGWKVPVVSHWGPAGGRFTELAGPNAKDVHFVQTYSFFGKQSPVGERVIKAMMAKY 307 Query: 304 PAIKGPDDITPAVGVANAYDGMQLAALAIAKAGSTNGDAVREGFYKIDRYEGLIKTYVKP 363 P +KGP DITPAVGVANAYDG+ LAALAI AGST GDAVR+GFYKI +YEGLIKTY KP Sbjct: 308 PNVKGPGDITPAVGVANAYDGVHLAALAIQAAGSTEGDAVRQGFYKIGKYEGLIKTYNKP 367 Query: 364 FSPTVHDALQADDYVWAQFIDNRILPVGL 392 FSP VHDA+ ADDYVWAQFIDNRI+PVGL Sbjct: 368 FSPEVHDAVLADDYVWAQFIDNRIVPVGL 396 >ref|ZP_06684920.1| ABC superfamily ATP binding cassette transporter, binding protein [Achromobacter piechaudii ATCC 43553] gb|EFF78271.1| ABC superfamily ATP binding cassette transporter, binding protein [Achromobacter piechaudii ATCC 43553] Length = 421 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 310/394 (78%), Positives = 350/394 (88%), Gaps = 5/394 (1%) Query: 5 TRRTLI--AAAAATLAA--ALSPLALAADPIKIGLVTALSGQSAQAGEALTRGMSIAIDE 60 TRR+ + A AAA +A AL P ALAADPIKIGL+TALSG+SA+AGEALTRGM+IAIDE Sbjct: 29 TRRSFLLRATAAALFSAGFALQP-ALAADPIKIGLITALSGESARAGEALTRGMTIAIDE 87 Query: 61 INAKGGLLGGRKLELVRRDDEGNPAKGVVAARELIFKEKVTVLFGGLDTPVSMAIVPIIN 120 INAKGGLL GR++ LVRRDDEGNPAKG+ AARELIFKEKV VLFGGLDTPVSMAIVPI+N Sbjct: 88 INAKGGLLDGRQVVLVRRDDEGNPAKGMAAARELIFKEKVAVLFGGLDTPVSMAIVPIVN 147 Query: 121 QEKVPFVGPWAAGTGVTKNGANPNYAFRVSAVDELVDKAMLNYAQKTFKSSKAGLILVNN 180 QEKVPF+GPWAAGT +T+N NPN+ FRVSA+DE+VD AM+ YAQKTF+++K GLILVNN Sbjct: 148 QEKVPFMGPWAAGTAITQNKGNPNFVFRVSAMDEIVDSAMVQYAQKTFQTAKPGLILVNN 207 Query: 181 PWGESNEKGIVAALAEKGLKPAGIEKFEASDVDVVPQLSRLKAAGADTLYLVGNVGPSAQ 240 PWGESNEKG+ AALA L AG EKF+ +D+DVVPQLSRLKAAGADTL+LVGNVGPSAQ Sbjct: 208 PWGESNEKGLNAALASAKLTAAGTEKFQPNDLDVVPQLSRLKAAGADTLFLVGNVGPSAQ 267 Query: 241 VVKSLDRMGWKVPVVSHWGPAGGRFTELAGPNAKNVHFIQTFSFFGKLSPVGEKVVAELK 300 VVKSLDRMGWKVP+VSHWGPAGGRFTELAGPNAKNVHF+QT+SFFGK PVG+KV+ LK Sbjct: 268 VVKSLDRMGWKVPIVSHWGPAGGRFTELAGPNAKNVHFVQTYSFFGKQGPVGDKVMQALK 327 Query: 301 AKYPAIKGPDDITPAVGVANAYDGMQLAALAIAKAGSTNGDAVREGFYKIDRYEGLIKTY 360 KY IKGP DITPAVGVANAYDGMQLAALAIA+AGST+GDAVR+GFYKI +Y+GLIKTY Sbjct: 328 TKYSDIKGPQDITPAVGVANAYDGMQLAALAIAQAGSTDGDAVRQGFYKIGKYDGLIKTY 387 Query: 361 VKPFSPTVHDALQADDYVWAQFIDNRILPVGLAQ 394 +PF+PT HDAL+ +DYVW QFIDNRILPV AQ Sbjct: 388 EQPFTPTSHDALRENDYVWTQFIDNRILPVKGAQ 421 >gb|EFV82026.1| twin-arginine translocation pathway signal [Achromobacter xylosoxidans C54] Length = 396 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 298/370 (80%), Positives = 336/370 (90%) Query: 25 ALAADPIKIGLVTALSGQSAQAGEALTRGMSIAIDEINAKGGLLGGRKLELVRRDDEGNP 84 ALAADPIKIGL+TALSG+SA+AGEALTRGM++AIDEINAKGGLLGGR++ LVRRDDEGNP Sbjct: 27 ALAADPIKIGLITALSGESARAGEALTRGMTVAIDEINAKGGLLGGRQVVLVRRDDEGNP 86 Query: 85 AKGVVAARELIFKEKVTVLFGGLDTPVSMAIVPIINQEKVPFVGPWAAGTGVTKNGANPN 144 AKG+ AARELI+KEKV VLFGGLDTPVSMAIVPI+NQEKVPF+GPWAAGT +T N NPN Sbjct: 87 AKGMAAARELIYKEKVAVLFGGLDTPVSMAIVPIVNQEKVPFMGPWAAGTAITHNKGNPN 146 Query: 145 YAFRVSAVDELVDKAMLNYAQKTFKSSKAGLILVNNPWGESNEKGIVAALAEKGLKPAGI 204 + FRVSA+DE+VD AM+ YA+KTF+S+K G+ILVNNPWGESNEKG+ AALA + PAG+ Sbjct: 147 FVFRVSAMDEIVDSAMVQYARKTFQSAKPGMILVNNPWGESNEKGLDAALAAAKITPAGV 206 Query: 205 EKFEASDVDVVPQLSRLKAAGADTLYLVGNVGPSAQVVKSLDRMGWKVPVVSHWGPAGGR 264 EKF+ +D+DV PQLSRLKAAGADTL+LVGNVGPSAQVVKSLDRMGWKVPVVSHWGPAGGR Sbjct: 207 EKFQPADLDVTPQLSRLKAAGADTLFLVGNVGPSAQVVKSLDRMGWKVPVVSHWGPAGGR 266 Query: 265 FTELAGPNAKNVHFIQTFSFFGKLSPVGEKVVAELKAKYPAIKGPDDITPAVGVANAYDG 324 FTELAGPNAKNVHF+QT+SFFGK PVGEKV+ LKAKY IKGP DITPAVGVANAYDG Sbjct: 267 FTELAGPNAKNVHFVQTYSFFGKQGPVGEKVMQALKAKYSDIKGPQDITPAVGVANAYDG 326 Query: 325 MQLAALAIAKAGSTNGDAVREGFYKIDRYEGLIKTYVKPFSPTVHDALQADDYVWAQFID 384 MQLAALAIA+AGST+GDAVR+GFYKI +YEGLIKTY +PF+P HDAL+ DDYVW F+D Sbjct: 327 MQLAALAIAQAGSTDGDAVRQGFYKIGKYEGLIKTYEQPFTPASHDALREDDYVWTHFVD 386 Query: 385 NRILPVGLAQ 394 NRILPV AQ Sbjct: 387 NRILPVKGAQ 396 >ref|ZP_08628922.1| branched-chain amino acid ABC transporter amino acid-binding protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08281.1| branched-chain amino acid ABC transporter amino acid-binding protein [Bradyrhizobiaceae bacterium SG-6C] Length = 402 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 266/386 (68%), Positives = 317/386 (82%), Gaps = 4/386 (1%) Query: 6 RRTLIAAAAATLAAALSPLALAADPIKIGLVTALSGQSAQAGEALTRGMSIAIDEINAKG 65 R + A AATL+ + A AA+PIKIGLVTALSGQSA+AGEALTRG +IAIDEINAKG Sbjct: 19 RGMMGVAFAATLSVSA---AHAAEPIKIGLVTALSGQSARAGEALTRGATIAIDEINAKG 75 Query: 66 GLLGGRKLELVRRDDEGNPAKGVVAARELIFKEKVTVLFGGLDTPVSMAIVPIINQEKVP 125 G+LG R+LELVRRDDE NPAKG++AARELI +EKV+ + GGLDTPV++AIVP +N K+P Sbjct: 76 GVLG-RQLELVRRDDESNPAKGLIAARELIQREKVSAVLGGLDTPVALAIVPFVNNSKMP 134 Query: 126 FVGPWAAGTGVTKNGANPNYAFRVSAVDELVDKAMLNYAQKTFKSSKAGLILVNNPWGES 185 FV PWAAGT +T+NGA NY FRVSA D VDKA++ +A+KT+ + K GLILVNNPWGES Sbjct: 135 FVVPWAAGTNITQNGAADNYVFRVSAKDSEVDKAIVQFARKTYGTKKPGLILVNNPWGES 194 Query: 186 NEKGIVAALAEKGLKPAGIEKFEASDVDVVPQLSRLKAAGADTLYLVGNVGPSAQVVKSL 245 NE G+ A+ E G++PAGIEKFE +DVDVVPQLSRLK AGADTL+LVGNVGP++QVVKSL Sbjct: 195 NEHGLKDAMKEAGIEPAGIEKFEGNDVDVVPQLSRLKQAGADTLFLVGNVGPASQVVKSL 254 Query: 246 DRMGWKVPVVSHWGPAGGRFTELAGPNAKNVHFIQTFSFFGKLSPVGEKVVAELKAKYPA 305 DRMGW P+VSHWGPAGGRFTELAGPNAKNV F+QT+SFFG LSPVG+KV+A L+AKYP Sbjct: 255 DRMGWAPPIVSHWGPAGGRFTELAGPNAKNVIFVQTYSFFGDLSPVGKKVMAALQAKYPD 314 Query: 306 IKGPDDITPAVGVANAYDGMQLAALAIAKAGSTNGDAVREGFYKIDRYEGLIKTYVKPFS 365 IKGP D+TPAVGVANAYD + + A AI KA S + A+R G Y++D+ GLIKTY KPF+ Sbjct: 315 IKGPADVTPAVGVANAYDSVLVIARAIEKAKSADPAAIRNGLYEVDQVNGLIKTYDKPFT 374 Query: 366 PTVHDALQADDYVWAQFIDNRILPVG 391 T HDAL DY+W +F DN I+PV Sbjct: 375 KTRHDALSEKDYIWTRFEDNHIMPVA 400 >ref|YP_001189316.1| extracellular ligand-binding receptor [Pseudomonas mendocina ymp] gb|ABP86584.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Pseudomonas mendocina ymp] Length = 395 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 254/379 (67%), Positives = 305/379 (80%), Gaps = 1/379 (0%) Query: 12 AAAATLAAALSPLALAADPIKIGLVTALSGQSAQAGEALTRGMSIAIDEINAKGGLLGGR 71 AAA L+ S A AA+PIK+GLV ALSGQSA++GEALTRG++IAIDE+NA+GG+LG R Sbjct: 16 AAAFALSCWFSLSAQAAEPIKVGLVAALSGQSAKSGEALTRGLTIAIDEVNAQGGVLG-R 74 Query: 72 KLELVRRDDEGNPAKGVVAARELIFKEKVTVLFGGLDTPVSMAIVPIINQEKVPFVGPWA 131 L+LVRRDDE NP+KG++AARELI +EKV VLFGGLDTPVS+AIVP+ NQ K+PF+G WA Sbjct: 75 PLQLVRRDDESNPSKGLLAARELIQREKVAVLFGGLDTPVSLAIVPLANQMKMPFMGVWA 134 Query: 132 AGTGVTKNGANPNYAFRVSAVDELVDKAMLNYAQKTFKSSKAGLILVNNPWGESNEKGIV 191 AGT +T+NGA NY FRVSAVDELVD+A+++YAQK F + K G+IL+NNPWGESNE+G Sbjct: 135 AGTPITRNGAADNYVFRVSAVDELVDEALVSYAQKHFATQKPGMILINNPWGESNEQGFR 194 Query: 192 AALAEKGLKPAGIEKFEASDVDVVPQLSRLKAAGADTLYLVGNVGPSAQVVKSLDRMGWK 251 ALA +G+ AG+E+ E SD+DVVPQLSRLK AGADTL LV NV PSAQVVKSLDRMGW Sbjct: 195 KALAARGMPVAGVERIEGSDLDVVPQLSRLKQAGADTLLLVANVAPSAQVVKSLDRMGWD 254 Query: 252 VPVVSHWGPAGGRFTELAGPNAKNVHFIQTFSFFGKLSPVGEKVVAELKAKYPAIKGPDD 311 VPVVSHWGPAGGRF ELAGPNA VHFIQT++F + GE + A L+ +YP IK D Sbjct: 255 VPVVSHWGPAGGRFGELAGPNAGRVHFIQTYTFSQEGDARGEAIFAALQKRYPEIKSLAD 314 Query: 312 ITPAVGVANAYDGMQLAALAIAKAGSTNGDAVREGFYKIDRYEGLIKTYVKPFSPTVHDA 371 +TPAVG+ANAYD + L A AIA AGST G A+R+G+Y I RYEGLIKTY KPFS HDA Sbjct: 315 VTPAVGIANAYDALHLTAQAIAAAGSTEGPAIRDGYYGIQRYEGLIKTYEKPFSAEQHDA 374 Query: 372 LQADDYVWAQFIDNRILPV 390 L DDYV+ +F + I+P+ Sbjct: 375 LGVDDYVFTRFEGDEIVPI 393