BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4918.p (309 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08407424.1| inner-membrane translocator [Hylemonella grac... 374 e-101 ref|ZP_06684921.1| branched-chain amino acid ABC superfamily ATP... 367 2e-99 gb|EFV82025.1| inner-membrane translocator [Achromobacter xyloso... 354 9e-96 ref|YP_485699.1| inner-membrane translocator [Rhodopseudomonas p... 309 3e-82 ref|ZP_01881282.1| inner-membrane translocator [Roseovarius sp. ... 301 8e-80 >ref|ZP_08407424.1| inner-membrane translocator [Hylemonella gracilis ATCC 19624] gb|EGI75453.1| inner-membrane translocator [Hylemonella gracilis ATCC 19624] Length = 292 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 238/292 (81%), Positives = 267/292 (91%) Query: 18 MLLLSALISGFGLGSMYGLMALGFYMTYAVSGTVNFAQGSSMMLGAVLCFTFAQTLGWPM 77 ML+LSAL+SG GLGSMYGLMALGFY+TYAVSGTVNFAQGSSMMLGAVL +TFAQTLGWP Sbjct: 1 MLVLSALVSGLGLGSMYGLMALGFYVTYAVSGTVNFAQGSSMMLGAVLTYTFAQTLGWPG 60 Query: 78 WLAIVLALAACALYGMLVEVLAVRPFARQGSNAWLMSTVALGIVLDNLVMHTFGKEPRSL 137 + A++LALA CA+YG+LVE+LAVRPF +GS+AWLM+TVALGIVLDN+VM T+GKEPRSL Sbjct: 61 YAAVLLALALCAVYGLLVELLAVRPFVNRGSDAWLMATVALGIVLDNVVMATYGKEPRSL 120 Query: 138 PSPLALSSIELGGMGLGVYPLHLLIPAIGLALAALLHTISRRTRWGTALLAVVQNRDAAR 197 PSPLA S IE+GG+GLGVYPL LLIP +GL LAA LH +SRRTRWGTA+LAVVQNR AAR Sbjct: 121 PSPLAQSPIEVGGLGLGVYPLQLLIPLVGLTLAAALHLVSRRTRWGTAMLAVVQNRAAAR 180 Query: 198 LMGIPITRAIAVAFALSTLLAGVAGVLIAPLFNVNADMGTLFGLKAFAVAILGGITSAWG 257 LMGIPI RA+A+AFALS L AG+AGVLIAPL NV++DMGTLFGLKAFAVAILGGITSAWG Sbjct: 181 LMGIPIRRAVALAFALSALFAGIAGVLIAPLMNVHSDMGTLFGLKAFAVAILGGITSAWG 240 Query: 258 VMIAGLLFGMAEALITATLGSGYTQIITFALVIAVLAIRPNGLFGRAQVKKV 309 VMIAGL+FG+ EA IT TLGSGYTQI+TFALVIA LA RPNGLFGRA+VKKV Sbjct: 241 VMIAGLIFGLVEATITTTLGSGYTQILTFALVIAALAWRPNGLFGRAEVKKV 292 >ref|ZP_06684921.1| branched-chain amino acid ABC superfamily ATP binding cassette transporter, permease protein [Achromobacter piechaudii ATCC 43553] gb|EFF78272.1| branched-chain amino acid ABC superfamily ATP binding cassette transporter, permease protein [Achromobacter piechaudii ATCC 43553] Length = 292 Score = 367 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 231/292 (79%), Positives = 261/292 (89%) Query: 18 MLLLSALISGFGLGSMYGLMALGFYMTYAVSGTVNFAQGSSMMLGAVLCFTFAQTLGWPM 77 MLL+SA++SG GLGSMYGLMALGFY+TYAVSGTVNFAQGSSMMLGAVL +TFAQTLGWP+ Sbjct: 1 MLLMSAIVSGLGLGSMYGLMALGFYLTYAVSGTVNFAQGSSMMLGAVLTYTFAQTLGWPL 60 Query: 78 WLAIVLALAACALYGMLVEVLAVRPFARQGSNAWLMSTVALGIVLDNLVMHTFGKEPRSL 137 A++LAL C +YG++VE LAVRPFA +GSNAWLMSTVALGIVLDN+VM TFGKEPRSL Sbjct: 61 APALLLALVLCGVYGLVVERLAVRPFASRGSNAWLMSTVALGIVLDNVVMFTFGKEPRSL 120 Query: 138 PSPLALSSIELGGMGLGVYPLHLLIPAIGLALAALLHTISRRTRWGTALLAVVQNRDAAR 197 PSPLA + +E+GG+GLG+YPL LLIP +GLALAA LHT+SRRTRWG ALLAVVQN +AAR Sbjct: 121 PSPLAQAPLEIGGLGLGIYPLQLLIPLVGLALAAALHTLSRRTRWGVALLAVVQNPNAAR 180 Query: 198 LMGIPITRAIAVAFALSTLLAGVAGVLIAPLFNVNADMGTLFGLKAFAVAILGGITSAWG 257 LMGIP+ AI AFA+STL AGVAG L+APLFNV ADMGTLFGLKA+ VAILGGITSAWG Sbjct: 181 LMGIPVRHAIMAAFAVSTLFAGVAGALVAPLFNVQADMGTLFGLKAYVVAILGGITSAWG 240 Query: 258 VMIAGLLFGMAEALITATLGSGYTQIITFALVIAVLAIRPNGLFGRAQVKKV 309 VMIAGLLFG+ EALIT LGSGYTQII+F LVI +LA+RPNGLFGRA V+KV Sbjct: 241 VMIAGLLFGVVEALITVALGSGYTQIISFTLVIVMLAVRPNGLFGRADVRKV 292 >gb|EFV82025.1| inner-membrane translocator [Achromobacter xylosoxidans C54] Length = 292 Score = 354 bits (909), Expect = 9e-96, Method: Composition-based stats. Identities = 239/292 (81%), Positives = 263/292 (90%) Query: 18 MLLLSALISGFGLGSMYGLMALGFYMTYAVSGTVNFAQGSSMMLGAVLCFTFAQTLGWPM 77 ML +SA++SG GLGSMYGLMALGFY+TYAVSGTVNFAQGSSMMLGAVL FTFAQTLGWP+ Sbjct: 1 MLWMSAIVSGLGLGSMYGLMALGFYLTYAVSGTVNFAQGSSMMLGAVLTFTFAQTLGWPL 60 Query: 78 WLAIVLALAACALYGMLVEVLAVRPFARQGSNAWLMSTVALGIVLDNLVMHTFGKEPRSL 137 A+ LALA CALYG++VE LAVRPFA +GSNAWLMSTVALGIVLDNLVM TFGKEPRSL Sbjct: 61 LAALPLALALCALYGLVVERLAVRPFASRGSNAWLMSTVALGIVLDNLVMFTFGKEPRSL 120 Query: 138 PSPLALSSIELGGMGLGVYPLHLLIPAIGLALAALLHTISRRTRWGTALLAVVQNRDAAR 197 PS LA + +E+GGMGLGVYPL LLIP +GLALAA LH +SRRTRWG ALLAVVQN +AAR Sbjct: 121 PSALAQTPLEIGGMGLGVYPLQLLIPLVGLALAAALHALSRRTRWGVALLAVVQNPNAAR 180 Query: 198 LMGIPITRAIAVAFALSTLLAGVAGVLIAPLFNVNADMGTLFGLKAFAVAILGGITSAWG 257 LMGIP+ RAI VAFA+STL AGVAG L+APLFNV ADMGTLFGLKAF VAILGGITSAWG Sbjct: 181 LMGIPVRRAIMVAFAVSTLFAGVAGALVAPLFNVQADMGTLFGLKAFVVAILGGITSAWG 240 Query: 258 VMIAGLLFGMAEALITATLGSGYTQIITFALVIAVLAIRPNGLFGRAQVKKV 309 VM+AGLLFG+AE LIT LGSGYTQII+FALVIA+LA+RPNGLFGRA V+KV Sbjct: 241 VMLAGLLFGVAEGLITVALGSGYTQIISFALVIAILAMRPNGLFGRAAVRKV 292 >ref|YP_485699.1| inner-membrane translocator [Rhodopseudomonas palustris HaA2] gb|ABD06788.1| inner-membrane translocator [Rhodopseudomonas palustris HaA2] Length = 289 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 192/291 (65%), Positives = 233/291 (80%), Gaps = 2/291 (0%) Query: 19 LLLSALISGFGLGSMYGLMALGFYMTYAVSGTVNFAQGSSMMLGAVLCFTFAQTLGWPMW 78 +L SA+ISG GLGSMYGL+ALGF++TY VS TVNFAQGS+MMLGAVL +TF GWPM Sbjct: 1 MLTSAIISGIGLGSMYGLIALGFHITYVVSNTVNFAQGSAMMLGAVLGYTFGVRYGWPMP 60 Query: 79 LAIVLALAACALYGMLVEVLAVRPFARQGSNAWLMSTVALGIVLDNLVMHTFGKEPRSLP 138 LAIV AL CAL+G++VE + VRPF +GSNAWLM+TVA GIVLDN VM TFGKEPR P Sbjct: 61 LAIVAALGVCALFGLVVERILVRPFVVRGSNAWLMATVAAGIVLDNAVMFTFGKEPRGFP 120 Query: 139 SPLALSSIELGGMGLGVYPLHLLIPAIGLALAALLHTISRRTRWGTALLAVVQNRDAARL 198 S A I L G GVYPL L+IP +G+ AA++H + R TR G ALLAVVQN DAARL Sbjct: 121 SDWASQPIRL--FGAGVYPLQLVIPLVGIGAAAVMHLLLRHTRRGKALLAVVQNPDAARL 178 Query: 199 MGIPITRAIAVAFALSTLLAGVAGVLIAPLFNVNADMGTLFGLKAFAVAILGGITSAWGV 258 MGI + R IA++F +ST LAG+AG+LIAPLF+V+++MGTLFG+KAFAVAILGG+ SAWGV Sbjct: 179 MGINVHRTIAISFMVSTALAGLAGLLIAPLFSVSSEMGTLFGIKAFAVAILGGMGSAWGV 238 Query: 259 MIAGLLFGMAEALITATLGSGYTQIITFALVIAVLAIRPNGLFGRAQVKKV 309 +IAGL +G+ EAL+T+ LGS YTQI+ F++VI LA+RPNGLFG A + KV Sbjct: 239 VIAGLAYGLIEALVTSFLGSVYTQIVVFSVVILALALRPNGLFGHAAINKV 289 >ref|ZP_01881282.1| inner-membrane translocator [Roseovarius sp. TM1035] gb|EDM30247.1| inner-membrane translocator [Roseovarius sp. TM1035] Length = 289 Score = 301 bits (771), Expect = 8e-80, Method: Composition-based stats. Identities = 181/291 (62%), Positives = 228/291 (78%), Gaps = 2/291 (0%) Query: 19 LLLSALISGFGLGSMYGLMALGFYMTYAVSGTVNFAQGSSMMLGAVLCFTFAQTLGWPMW 78 ++ S LI+G LGSMYGLMALGF++TYAVS TVNF+QGSSMM GAV+ +TF TLGWP W Sbjct: 1 MIASTLITGLALGSMYGLMALGFHITYAVSKTVNFSQGSSMMFGAVMGYTFMVTLGWPFW 60 Query: 79 LAIVLALAACALYGMLVEVLAVRPFARQGSNAWLMSTVALGIVLDNLVMHTFGKEPRSLP 138 + I ALA CA+ G+ VE VRPFA +GS+AWLM+TVA GIVLDN+++ TFGKEPRSLP Sbjct: 61 IGIPAALACCAILGLAVERFLVRPFAARGSDAWLMATVAGGIVLDNIILFTFGKEPRSLP 120 Query: 139 SPLALSSIELGGMGLGVYPLHLLIPAIGLALAALLHTISRRTRWGTALLAVVQNRDAARL 198 SP ++I++ G G YPL L+IP +GLA+A L ++ +TR G A+LA VQ +AARL Sbjct: 121 SPFVENAIDI--FGAGAYPLQLIIPVVGLAIAMALTIVTTKTRLGKAMLASVQRPEAARL 178 Query: 199 MGIPITRAIAVAFALSTLLAGVAGVLIAPLFNVNADMGTLFGLKAFAVAILGGITSAWGV 258 G+ IA +FA+S + AGVAG+LIAPLFNV+A MG +FG+KAFA AILGGI+SAWGV Sbjct: 179 TGVNTQAVIAASFAISAVFAGVAGLLIAPLFNVSAGMGVVFGIKAFAAAILGGISSAWGV 238 Query: 259 MIAGLLFGMAEALITATLGSGYTQIITFALVIAVLAIRPNGLFGRAQVKKV 309 MIAG+L+G EAL TA +GS YTQI++F++VI VL PNGLFGRA++KKV Sbjct: 239 MIAGVLYGCVEALTTAYIGSSYTQIVSFSVVILVLVTVPNGLFGRAELKKV 289