BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4914.p (681 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777166.1| GGDEF domain-containing protein [Herbaspiril... 993 0.0 ref|YP_001354597.1| hypothetical protein mma_2907 [Janthinobacte... 605 e-170 ref|YP_001100915.1| hypothetical protein HEAR2672 [Herminiimonas... 577 e-162 ref|YP_004040764.1| PAS/PAC/GAF sensor-containing diguanylate cy... 275 2e-71 ref|YP_003052205.1| PAS/PAC/GAF sensor-containing diguanylate cy... 275 3e-71 >ref|YP_003777166.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ65258.1| GGDEF domain containing protein [Herbaspirillum seropedicae SmR1] Length = 738 Score = 993 bits (2566), Expect = 0.0, Method: Composition-based stats. Identities = 514/628 (81%), Positives = 564/628 (89%) Query: 1 MKQLAWQMQDALERGMKEREIDLRLLVQRPSVRSGRDLPRIRRVFNELQANVPHYAWIGL 60 +KQLAWQMQDALERGM EREID+RLLV RPS+R +D IR V ELQ NVPHYAWIG+ Sbjct: 73 LKQLAWQMQDALERGMAEREIDIRLLVSRPSIRQAQDPAHIRAVLEELQRNVPHYAWIGM 132 Query: 61 ANPEGIVQVATNGLLEGASVAQRPWFQEGSKGEYSADFHPAVLLAQKLPPQSNPWRFVDL 120 A P+G V AT GLLEG SVA+RPWFQ+G + EY+AD+HPAVLL +KLPPQS+PWRFVDL Sbjct: 133 ARPDGTVLAATKGLLEGMSVAERPWFQQGQQTEYAADYHPAVLLEKKLPPQSDPWRFVDL 192 Query: 121 SAPVHDLNGHYLGVVGLHLSWSWARDIAAKLLDPAGNRYDVEVIIVRDDGTVILGPKGME 180 S PV ++ G +GV+G+HLSW WAR+IA+KLL+P +RYDV+V+IVR DGTVILGPK ME Sbjct: 193 SMPVLNMQGQMIGVMGMHLSWGWAREIASKLLNPTSSRYDVDVLIVRSDGTVILGPKDME 252 Query: 181 ETKLDTASVRAAQGSDNGGSLIETWPDGRRYVSGYARTGVKGGMKLHWSVIVRQPETVAL 240 ETK+DTAS RAAQ S GGSLIETWPDGRRYV+GYARTG G MKL W+VIVRQPETVAL Sbjct: 253 ETKIDTASFRAAQHSSAGGSLIETWPDGRRYVTGYARTGQGGEMKLKWTVIVRQPETVAL 312 Query: 241 QAFRDLEKRVIVVGALSGAILVLLAFFLARRLVAPINALSAALEQRAAGHGDLPIPQVNS 300 +AFRDLE+RVIVVGAL+GA+LVLLAF L RRLVAPINALSAALEQRAAG ++ IP V S Sbjct: 313 EAFRDLERRVIVVGALAGAVLVLLAFMLTRRLVAPINALSAALEQRAAGLQEVEIPLVTS 372 Query: 301 YREIQLLSSTLVNMVEREETYLREVRSLNESLEQRVAERTSRLHETASALQEALDQQQAN 360 RE+QLLSS L MVEREE YLRE+RSLNESLE+RV ERTSRLHETA+ALQ+ALDQQQ N Sbjct: 373 VRELQLLSSALGTMVEREERYLREMRSLNESLEERVVERTSRLHETATALQQALDQQQTN 432 Query: 361 QIQLEESAAELRAILENAQDAFIAADEQGRVVEWNRQAELLLGWPRDQAMGRDMAELIIP 420 QIQLEESAAELRAILENAQDAFIAADE G +VEWNRQAELLLGWPRD MGR MAELIIP Sbjct: 433 QIQLEESAAELRAILENAQDAFIAADEHGHIVEWNRQAELLLGWPRDTVMGRSMAELIIP 492 Query: 421 PDMRAAHNRGMAQFLKDGTSVVINNRIELQAQHHDGHELPIEITVGHVKRQSGHLFIAFL 480 DMRAAHN GMAQFLKDGTSVVINNRIELQA H DGHELP+EITVGHVKRQSGHLFIAFL Sbjct: 493 SDMRAAHNHGMAQFLKDGTSVVINNRIELQALHRDGHELPVEITVGHVKRQSGHLFIAFL 552 Query: 481 HDITERLAFRDQMRELALTDVLTSLPNRRAFSDRLPEGMMRARRADQLLALFFMDIDGFK 540 HDITERLAFRDQMRELALTDVLTSLPNRRAFSDRLPEGMMRARRA QLLALFFMD+DGFK Sbjct: 553 HDITERLAFRDQMRELALTDVLTSLPNRRAFSDRLPEGMMRARRAHQLLALFFMDLDGFK 612 Query: 541 GVNDRYGHEAGDELLVEFARRLQHSVRDVDTVARLAGDEFVVILENLQTQEDALMVAQKI 600 G+NDRYGHEAGDELLVEFARRLQ SVRDVDTVARLAGDEFVVILENLQ+Q+DA+MVA+KI Sbjct: 613 GINDRYGHEAGDELLVEFARRLQASVRDVDTVARLAGDEFVVILENLQSQQDAIMVAEKI 672 Query: 601 LNTIREPFQLTHSTVNISSSIGVAVYEP 628 L+ IREPF+LTHSTV+ISSSIGVAVY+P Sbjct: 673 LHAIREPFELTHSTVHISSSIGVAVYQP 700 >ref|YP_001354597.1| hypothetical protein mma_2907 [Janthinobacterium sp. Marseille] gb|ABR90575.1| Hypothetical protein mma_2907 [Janthinobacterium sp. Marseille] Length = 719 Score = 605 bits (1559), Expect = e-170, Method: Composition-based stats. Identities = 325/638 (50%), Positives = 445/638 (69%), Gaps = 3/638 (0%) Query: 1 MKQLAWQMQDALERGMKEREIDLRLLVQRPSVRSGRDLPRIRRVFNELQANVPHYAWIGL 60 ++QL+WQM+D+L+RGM +++ VR ++ +RRVF+ + N P YAWIGL Sbjct: 62 LQQLSWQMRDSLDRGMGRMIDHAQVIADLVPVRDAQNPAEMRRVFDNVHKNFPDYAWIGL 121 Query: 61 ANPEGIVQVATNGLLEGASVAQRPWFQEGSKGEYSADFHPAVLLAQKLPPQSNPWRFVDL 120 +P+GIV A+ GLLEG V++RPWFQ G++ + D+HPAVLL KLP WRFVD+ Sbjct: 122 TDPKGIVVSASGGLLEGVDVSKRPWFQGGAQQVFIGDYHPAVLLEDKLPESEERWRFVDV 181 Query: 121 SAPVHDLNGHYLGVVGLHLSWSWARDIAAKLLDPAGNRYDVEVIIVRDDGTVILGPKGME 180 + PV +G Y GV+G+HLSW+WAR IA LL PA +Y VEVI+VR+DG V+LGP +E Sbjct: 182 ALPVTRSDGSYRGVLGIHLSWNWARGIANSLLVPADRQYMVEVIVVRNDGMVMLGPDYLE 241 Query: 181 ETKLDTASVRAAQGSDNGGSLIETWPDGRRYVSGYARTGVKGGM-KLHWSVIVRQPETVA 239 E+ + T S+ A + + G++ E WPDGRRY++GY++TG + G L W+V++RQPE +A Sbjct: 242 ESTITTTSLDLAH-TGSTGAIAEKWPDGRRYLTGYSQTGARAGHPSLKWAVLIRQPEEIA 300 Query: 240 LQAFRDLEKRVIVVGALSGAILVLLAFFLARRLVAPINALSAALEQRAAGHGDLPIPQVN 299 L FR+L+++V+ VGA G +L L+A LAR+L P++ LSAA+ QR G G IP ++ Sbjct: 301 LADFRELQQQVLWVGAALGLLLALIAVALARQLARPLDDLSAAITQRKEGTGT-AIPVID 359 Query: 300 SYREIQLLSSTLVNMVEREETYLREVRSLNESLEQRVAERTSRLHETASALQEALDQQQA 359 Y E+ LLS TL +MV RE+ ++ ++R+LNE+LE V ERT + + A AL++AL QQ A Sbjct: 360 GYHEVHLLSLTLADMVGREQQHVGKLRALNENLEHLVQERTQEIEQKAQALEDALQQQLA 419 Query: 360 NQIQLEESAAELRAILENAQDAFIAADEQGRVVEWNRQAELLLGWPRDQAMGRDMAELII 419 Q +L+ES AELRA L+NA DAFI+ D+ G +V+WN QAE LLGW +A+G+ +AELI+ Sbjct: 420 IQERLQESEAELRATLQNANDAFISMDQDGIIVDWNEQAEHLLGWTHKEAVGQPLAELIV 479 Query: 420 PPDMRAAHNRGMAQFLKDGTSVVINNRIELQAQHHDGHELPIEITVGHVKRQSGHLFIAF 479 PP +R + R + FL G S +IN R+EL A DG E PIE+ V V R++G+LFIAF Sbjct: 480 PPTLRDGYERDLQHFLLTGESNIINRRVELSALRRDGKEFPIELAVACVARRNGYLFIAF 539 Query: 480 LHDITERLAFRDQMRELALTDVLTSLPNRRAFSDRLPEGMMRARRADQLLALFFMDIDGF 539 LHDITER + + +AL D LT LPNRRA RLPE + RA R + LA+ F+D+DGF Sbjct: 540 LHDITERKLLQASLMGMALKDPLTDLPNRRALIQRLPESIARAARLGKPLAVLFLDLDGF 599 Query: 540 KGVNDRYGHEAGDELLVEFARRLQHSVRDVDTVARLAGDEFVVILENLQTQEDALMVAQK 599 KGVND YGHEAGDELL A+RL +VR DTVARLAGDEFV++LE L DA+ VA K Sbjct: 600 KGVNDGYGHEAGDELLRTIAQRLLGAVRTTDTVARLAGDEFVIVLEMLNGDSDAMDVADK 659 Query: 600 ILNTIREPFQLTHSTVNISSSIGVAVYEPGQHIDQDAL 637 IL+T+++PF LT +TV IS+SIG+A++ P H + L Sbjct: 660 ILHTLQQPFTLTAATVTISASIGIAMHWPEDHTTPEQL 697 >ref|YP_001100915.1| hypothetical protein HEAR2672 [Herminiimonas arsenicoxydans] emb|CAL62794.1| Hypothetical protein; putative exported protein; putative PAS and GGDEF domains [Herminiimonas arsenicoxydans] Length = 708 Score = 577 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 313/629 (49%), Positives = 421/629 (66%), Gaps = 2/629 (0%) Query: 1 MKQLAWQMQDALERGMKEREIDLRLLVQRPSVRSGRDLPRIRRVFNELQANVPHYAWIGL 60 ++QL+WQM+D+L+ GM+ R + P VR D IR++F+ ++ P YAWIGL Sbjct: 50 LQQLSWQMRDSLDLGMQHAANHARTIADLPMVRDADDAAVIRQIFSNIRQYFPDYAWIGL 109 Query: 61 ANPEGIVQVATNGLLEGASVAQRPWFQEGSKGEYSADFHPAVLLAQKLPPQSNPWRFVDL 120 + +G V + GLLEGA V+QR WF G G ++ D+HPAVLL KL WRFVD+ Sbjct: 110 TDRQGRVFAGSEGLLEGADVSQRNWFSGGKIGLFTGDYHPAVLLENKLSRPDGSWRFVDI 169 Query: 121 SAPVHDLNGHYLGVVGLHLSWSWARDIAAKLLDPAGNRYDVEVIIVRDDGTVILGPKGME 180 + PV NG + GV+G+HLSW WAR IA +LL P +Y VEVI+VRDDG +ILGP +E Sbjct: 170 ALPVTHSNGEFRGVLGVHLSWDWARGIAHELLVPTDRQYQVEVIVVRDDGMIILGPDYLE 229 Query: 181 ETKLDTASVRAAQGSDNGGSLIETWPDGRRYVSGYARTGVKG-GMKLHWSVIVRQPETVA 239 ET ++T S+ ++ G ++ ETW DGRRY++GYA+TG++ + WSV++RQPE +A Sbjct: 230 ETSINTDSLNLSRIGSTG-AIAETWADGRRYLTGYAQTGLRNPDASVKWSVLIRQPEEIA 288 Query: 240 LQAFRDLEKRVIVVGALSGAILVLLAFFLARRLVAPINALSAALEQRAAGHGDLPIPQVN 299 L FR L+ ++++VG G +L L+A L RRL P++ LSAA+ ++ IP N Sbjct: 289 LADFRGLQHQILLVGGGIGLLLALVAIALGRRLAKPLDDLSAAIVDQSKDGAIKAIPITN 348 Query: 300 SYREIQLLSSTLVNMVEREETYLREVRSLNESLEQRVAERTSRLHETASALQEALDQQQA 359 +YRE+ LLS TL +MVERE ++ + +LNE+LE V ERTS + + A AL+ +L QQ A Sbjct: 349 NYREVHLLSMTLASMVERERQHVMHLHALNENLENLVHERTSEIEQKAMALEASLAQQLA 408 Query: 360 NQIQLEESAAELRAILENAQDAFIAADEQGRVVEWNRQAELLLGWPRDQAMGRDMAELII 419 Q +L++S AELRAIL NA DAFIA D+ G +VEWN QAE LLGW R +A GR + ++II Sbjct: 409 IQARLQDSEAELRAILHNANDAFIAIDQDGIIVEWNEQAEHLLGWTRTEACGRKVEQMII 468 Query: 420 PPDMRAAHNRGMAQFLKDGTSVVINNRIELQAQHHDGHELPIEITVGHVKRQSGHLFIAF 479 PP RAA+ + FL G S VIN R+E+ A DG E P+E+ V V R +G LFIAF Sbjct: 469 PPAQRAAYAESLQDFLNTGASKVINRRVEVSALRRDGLEFPVELAVASVPRHNGWLFIAF 528 Query: 480 LHDITERLAFRDQMRELALTDVLTSLPNRRAFSDRLPEGMMRARRADQLLALFFMDIDGF 539 LHDITER + + +AL D LT LPNRRA +LPE ++RA R + LA+ F+D+DGF Sbjct: 529 LHDITERQLLQATLTNMALKDALTDLPNRRALMQKLPEAIVRAARLGKPLAVLFIDLDGF 588 Query: 540 KGVNDRYGHEAGDELLVEFARRLQHSVRDVDTVARLAGDEFVVILENLQTQEDALMVAQK 599 KG+ND YGHEAGDELL +R+ VR DTV RLAGDEFVV+LE L DAL VA K Sbjct: 589 KGINDGYGHEAGDELLRTMGQRIVGVVRATDTVVRLAGDEFVVVLEMLNGDADALEVADK 648 Query: 600 ILNTIREPFQLTHSTVNISSSIGVAVYEP 628 IL I++PF L+ +TV +S SIG+A++ P Sbjct: 649 ILQAIQQPFVLSAATVTLSGSIGIAMHWP 677 >ref|YP_004040764.1| PAS/PAC/GAF sensor-containing diguanylate cyclase [Methylovorus sp. MP688] gb|ADQ85528.1| diguanylate cyclase with PAS/PAC and GAF sensors [Methylovorus sp. MP688] Length = 640 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 144/343 (41%), Positives = 215/343 (62%), Gaps = 5/343 (1%) Query: 297 QVNSYREIQLLSSTLVNMVERE--ETYLREVRSLNESLEQRVAERTSRLHETASALQEAL 354 Q+N+ E++ S + ++ +R+ E L E L LE RVA+RT L+++ L A+ Sbjct: 278 QINTRGELEYFVSIVKDIHDRKVAEQALNE---LQHELENRVAQRTFELNKSNEMLSFAM 334 Query: 355 DQQQANQIQLEESAAELRAILENAQDAFIAADEQGRVVEWNRQAELLLGWPRDQAMGRDM 414 +Q +L+E E+ ++ENA DA+++ ++ G + WNRQAE+ GW +A+G+ + Sbjct: 335 AKQTLAAQELKERELEISMVIENANDAYVSINQSGIITAWNRQAEITFGWSAREAIGQRL 394 Query: 415 AELIIPPDMRAAHNRGMAQFLKDGTSVVINNRIELQAQHHDGHELPIEITVGHVKRQSGH 474 ++IIPP M+ AH GM + + G ++V+ R+EL+A+H DGH +P+E+ + ++ H Sbjct: 395 DQVIIPPHMQQAHLNGMQRHMDTGEALVLGKRLELEAKHKDGHIVPVEVRISKIEVHGKH 454 Query: 475 LFIAFLHDITERLAFRDQMRELALTDVLTSLPNRRAFSDRLPEGMMRARRADQLLALFFM 534 +F AFL DI+ER + + + A DVLT LPNRRAF++ LP + RA R Q +AL F+ Sbjct: 455 IFSAFLTDISERKHLQSLLEKEAKHDVLTGLPNRRAFTEALPLALARADRTQQWMALMFI 514 Query: 535 DIDGFKGVNDRYGHEAGDELLVEFARRLQHSVRDVDTVARLAGDEFVVILENLQTQEDAL 594 D+DGFK +ND GH+AGD LL E A RL + R DTVAR AGDEFVV+LEN+ ++ A Sbjct: 515 DLDGFKQINDELGHDAGDMLLREIANRLNSATRQTDTVARFAGDEFVVLLENMPEKQHAE 574 Query: 595 MVAQKILNTIREPFQLTHSTVNISSSIGVAVYEPGQHIDQDAL 637 VAQKIL +R+P L IS S+G+A Y P H+ D L Sbjct: 575 GVAQKILTLLRDPVMLGGEPRQISCSLGLAYYAPNSHVQPDML 617 >ref|YP_003052205.1| PAS/PAC/GAF sensor-containing diguanylate cyclase [Methylovorus glucosetrophus SIP3-4] gb|ACT51678.1| diguanylate cyclase with PAS/PAC and GAF sensors [Methylovorus glucosetrophus SIP3-4] Length = 640 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 145/343 (42%), Positives = 214/343 (62%), Gaps = 5/343 (1%) Query: 297 QVNSYREIQLLSSTLVNMVERE--ETYLREVRSLNESLEQRVAERTSRLHETASALQEAL 354 Q+N E++ S + ++ +R+ E L E L LE RVA+RT L+++ L A+ Sbjct: 278 QINLRGELEYFVSIVKDIHDRKVAEQALNE---LQHELENRVAQRTFELNKSNEMLSFAM 334 Query: 355 DQQQANQIQLEESAAELRAILENAQDAFIAADEQGRVVEWNRQAELLLGWPRDQAMGRDM 414 +Q +L+E E+ ++ENA DA+++ ++ G + WNRQAE+ GW +A+G+ + Sbjct: 335 AKQTLAAQELKERELEISMVIENANDAYVSINQSGIITAWNRQAEITFGWSAREAIGQRL 394 Query: 415 AELIIPPDMRAAHNRGMAQFLKDGTSVVINNRIELQAQHHDGHELPIEITVGHVKRQSGH 474 ++IIPP M+ AH GM + + G +VV+ R+EL+A+H DGH +P+E+ + ++ H Sbjct: 395 DQVIIPPHMQQAHLNGMQRHMDTGEAVVLGKRLELEAKHKDGHIVPVEVRISKIEVHGKH 454 Query: 475 LFIAFLHDITERLAFRDQMRELALTDVLTSLPNRRAFSDRLPEGMMRARRADQLLALFFM 534 +F AFL DI+ER + + + A DVLT LPNRRAF++ LP + RA R Q +AL F+ Sbjct: 455 IFSAFLTDISERKHLQSLLEKEAKHDVLTGLPNRRAFTEALPLALARADRTQQWMALMFI 514 Query: 535 DIDGFKGVNDRYGHEAGDELLVEFARRLQHSVRDVDTVARLAGDEFVVILENLQTQEDAL 594 D+DGFK +ND GH+AGD LL E A RL + R DTVAR AGDEFVV+LEN+ ++ A Sbjct: 515 DLDGFKQINDELGHDAGDMLLREIANRLNSATRQTDTVARFAGDEFVVLLENMPEKQHAE 574 Query: 595 MVAQKILNTIREPFQLTHSTVNISSSIGVAVYEPGQHIDQDAL 637 VAQKIL +R+P L IS S+G+A Y P H+ D L Sbjct: 575 GVAQKILTLLRDPVMLGGEPRQISCSLGLAYYAPNSHVQPDML 617