BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4909.p (236 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777161.1| two component response regulator protein [He... 433 e-119 ref|ZP_02882870.1| two component transcriptional regulator, wing... 280 2e-73 ref|YP_557786.1| two component transcriptional regulator [Burkho... 277 7e-73 ref|ZP_06843413.1| two component transcriptional regulator, wing... 277 8e-73 ref|YP_003907596.1| winged helix family two component transcript... 276 2e-72 >ref|YP_003777161.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65253.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 236 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 232/236 (98%), Positives = 235/236 (99%) Query: 1 MQEHAGNIVFIEDDPHIRKLVRSALEQEGFIVHEAKSAREGVTEAGTRKPDLIILDLGLP 60 MQEHAGNIVFIEDDPHIRKLVRSALEQEGF+VHEAKSAREGVTEAGTRKPDLIILDLGLP Sbjct: 1 MQEHAGNIVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLP 60 Query: 61 DGDGKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQL 120 DGDGKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQL Sbjct: 61 DGDGKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQL 120 Query: 121 RRHARASGAGQSSGRYRLGDVVVDLPARSVSRNGEALHLTQIEYRLLATLLRDAGRVITH 180 RRHARAS AGQSSGRYRLGDVVVDLPARSVSR+GEALHLTQIEYRLL+TLLRDAGRVITH Sbjct: 121 RRHARASSAGQSSGRYRLGDVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITH 180 Query: 181 RQLLVAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVADVVAE 236 RQLLVAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVADVVAE Sbjct: 181 RQLLVAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVADVVAE 236 >ref|ZP_02882870.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gb|EDT11154.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 232 Score = 280 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 148/234 (63%), Positives = 178/234 (76%), Gaps = 2/234 (0%) Query: 1 MQEHAGNIVFIEDDPHIRKLVRSALEQEGFIVHEAKSAREGVTEAGTRKPDLIILDLGLP 60 M + + +V IED+ IR+ VR+ALE EG +VH+A++ ++G+ EA TRKPDL+I+DLGLP Sbjct: 1 MSDPSITVVLIEDEKQIRRFVRTALEDEGIVVHDAETGKQGLVEAATRKPDLVIVDLGLP 60 Query: 61 DGDGKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQL 120 D DG VI E+R WS +P+++LSARTQESEKV ALDAGADDYL KPFG+ ELLAR+RA L Sbjct: 61 DTDGLDVIRELRGWSELPVIVLSARTQESEKVAALDAGADDYLTKPFGVSELLARIRAHL 120 Query: 121 RRHARASGAGQSSGRYRLGDVVVDLPARSVSRNGEALHLTQIEYRLLATLLRDAGRVITH 180 RR R G S + R G V VDL R V+R+G A+HLT IEYRLLATL+R AGRV+TH Sbjct: 121 RR--RNQGGANESSQVRFGAVSVDLALRQVTRDGAAIHLTPIEYRLLATLVRHAGRVLTH 178 Query: 181 RQLLVAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVADVV 234 RQLL WGPSH E HYLRIYM LR KLERD AQP HI+TE GVGYR+ VV Sbjct: 179 RQLLRDVWGPSHVESYHYLRIYMAHLRGKLERDPAQPEHIVTETGVGYRLVGVV 232 >ref|YP_557786.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE29734.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 232 Score = 277 bits (709), Expect = 7e-73, Method: Composition-based stats. Identities = 146/234 (62%), Positives = 177/234 (75%), Gaps = 2/234 (0%) Query: 1 MQEHAGNIVFIEDDPHIRKLVRSALEQEGFIVHEAKSAREGVTEAGTRKPDLIILDLGLP 60 M + + +V IED+ IR+ VR+ALE EG +VH+A++ ++G+ EA TRKPDL+I+DLGLP Sbjct: 1 MTDPSITVVLIEDEKQIRRFVRTALEGEGIVVHDAETGKQGLVEAATRKPDLVIVDLGLP 60 Query: 61 DGDGKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQL 120 D DG VI E+R WS +P+++LSARTQE+EKV ALDAGADDYL KPFG+ ELLAR+RA + Sbjct: 61 DTDGLDVIRELRGWSELPVIVLSARTQETEKVAALDAGADDYLTKPFGVSELLARIRAHM 120 Query: 121 RRHARASGAGQSSGRYRLGDVVVDLPARSVSRNGEALHLTQIEYRLLATLLRDAGRVITH 180 RR R G S + R G V VDL R VSR+G A+HLT IEYRLLATL+R AGRV+TH Sbjct: 121 RR--RNQGGANESPQVRFGTVTVDLALRQVSRDGAAVHLTPIEYRLLATLVRHAGRVLTH 178 Query: 181 RQLLVAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVADVV 234 RQLL WGPSH E HYLRIYM LR KLERD AQP HI+TE GVGYR+ V Sbjct: 179 RQLLREVWGPSHVESHHYLRIYMAHLRGKLERDPAQPEHIITETGVGYRLVGAV 232 >ref|ZP_06843413.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gb|EFG68927.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 232 Score = 277 bits (709), Expect = 8e-73, Method: Composition-based stats. Identities = 146/234 (62%), Positives = 177/234 (75%), Gaps = 2/234 (0%) Query: 1 MQEHAGNIVFIEDDPHIRKLVRSALEQEGFIVHEAKSAREGVTEAGTRKPDLIILDLGLP 60 M + + +V IED+ IR+ VR+ALE EG +VH+A++ ++G+ EA TRKPDL+I+DLGLP Sbjct: 1 MSDPSITVVLIEDEKQIRRFVRTALEGEGIVVHDAETGKQGLVEAATRKPDLVIVDLGLP 60 Query: 61 DGDGKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQL 120 D DG VI E+R WS +P+++LSARTQE+EKV ALDAGADDYL KPFG+ ELLAR+RA + Sbjct: 61 DTDGLDVIRELRGWSELPVIVLSARTQETEKVAALDAGADDYLTKPFGVSELLARIRAHM 120 Query: 121 RRHARASGAGQSSGRYRLGDVVVDLPARSVSRNGEALHLTQIEYRLLATLLRDAGRVITH 180 RR R G S + R G V VDL R VSR+G A+HLT IEYRLLATL+R AGRV+TH Sbjct: 121 RR--RNQGGANESPQVRFGTVTVDLALRQVSRDGAAVHLTPIEYRLLATLVRHAGRVLTH 178 Query: 181 RQLLVAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVADVV 234 RQLL WGPSH E HYLRIYM LR KLERD AQP HI+TE GVGYR+ V Sbjct: 179 RQLLREVWGPSHVESHHYLRIYMAHLRGKLERDPAQPEHIITETGVGYRLVGAV 232 >ref|YP_003907596.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN58305.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 232 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 147/233 (63%), Positives = 177/233 (75%), Gaps = 2/233 (0%) Query: 1 MQEHAGNIVFIEDDPHIRKLVRSALEQEGFIVHEAKSAREGVTEAGTRKPDLIILDLGLP 60 M + + +V IED+ IR+ VR+ALE EG +VH+A++ ++G+ EA TRKPDL+I+DLGLP Sbjct: 1 MSDLSTTVVLIEDEKQIRRFVRAALEGEGMVVHDAETGKQGLVEAATRKPDLVIVDLGLP 60 Query: 61 DGDGKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQL 120 D DG VI E+R WS +P+++LSARTQESEKV ALDAGADDYL KPFG+ ELLAR+RA L Sbjct: 61 DTDGLDVIRELRGWSELPVIVLSARTQESEKVAALDAGADDYLTKPFGVSELLARIRAHL 120 Query: 121 RRHARASGAGQSSGRYRLGDVVVDLPARSVSRNGEALHLTQIEYRLLATLLRDAGRVITH 180 RR R G S + R G V VDL R V+R+G A+HLT IEYRLLATL+R AGRV+TH Sbjct: 121 RR--RNQGGANESPQVRFGAVSVDLALRQVTRDGAAVHLTPIEYRLLATLVRHAGRVLTH 178 Query: 181 RQLLVAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVADV 233 RQLL WGPSH E HYLRIYM LR KLERD AQP HI+TE GVGYR+ V Sbjct: 179 RQLLRDVWGPSHVESHHYLRIYMAHLRGKLERDPAQPEHIVTETGVGYRLVGV 231