BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4904.p         (308 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001779181.1| hypothetical protein Bcenmc03_5565 [Burkhold...   225   6e-57
ref|YP_001585684.1| hypothetical protein Bmul_5728 [Burkholderia...   100   5e-19
ref|YP_001585680.1| hypothetical protein Bmul_5724 [Burkholderia...    74   2e-11
ref|YP_971753.1| hypothetical protein Aave_3422 [Acidovorax citr...    56   6e-06

>ref|YP_001779181.1| hypothetical protein Bcenmc03_5565 [Burkholderia cenocepacia MC0-3]
 gb|ACA94691.1| hypothetical protein Bcenmc03_5565 [Burkholderia cenocepacia MC0-3]
          Length = 333

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 115/274 (41%), Positives = 175/274 (63%), Gaps = 7/274 (2%)

Query: 25  KKAATTNRTKDSGVEVIVRRDDTGDWIKPTTGEKFYIDEDALFPDVEFEFTTDVPGPYVW 84
           + A+TTN  ++S  + +++ +D G+W++P TG+KFYIDE A FP V FE  T  P PY W
Sbjct: 16  RHASTTNADQNSLTKAVIQ-NDVGEWVRPATGDKFYIDETAKFPSVTFEIKTTEPPPYQW 74

Query: 85  TWEMIWSAQVSSLSEK-ERGRTVKNLRRAGKFTQDGRHWNARSIGAVIGGTLRIVVQVGQ 143
            W ++W AQVS   +  +RG+ V++    G FT +   W A     ++GG L + V+ G 
Sbjct: 75  KWTIVWDAQVSPFRKSGKRGKKVRSFSETGSFTSNDTTWEATLNDKILGGKLSVEVKAGS 134

Query: 144 QEFIRTVKVLAKQPGADRIKAHIRE-RNEPLMEKLIHQESRFKHVINNDLEPIVAGDRGF 202
            EF RTV VL K P  D + A++++  N    + ++ QES FK+  + D EP+VAGD+GF
Sbjct: 135 TEFRRTVFVLGKNPSKDDVLAYLKQIPNTIGFDLILEQESHFKNFWDTDNEPVVAGDKGF 194

Query: 203 GVVQLSNPMPSYSQIWSWKENVDAGIALLRQKRAAAKRDFEQQKPVSYTAEMLDTETITR 262
           G+ Q+++P P+Y Q+W+WKEN+ AG +L +QK+  A   F+      YT + L  ET TR
Sbjct: 195 GMTQMTHPSPTYEQVWNWKENMKAGTSLFQQKQRDAISSFKGH---PYTEDQLKHETFTR 251

Query: 263 WNGGKYHEWDEGKKKWVRQKSILCDSKTGNVGWN 296
           WNGG Y++W+  K + + ++ +LCDS+TGN+GWN
Sbjct: 252 WNGGSYYQWN-AKTQQLERQDMLCDSQTGNIGWN 284


>ref|YP_001585684.1| hypothetical protein Bmul_5728 [Burkholderia multivorans ATCC
           17616]
 gb|ABX19392.1| hypothetical protein Bmul_5728 [Burkholderia multivorans ATCC
           17616]
          Length = 141

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/126 (38%), Positives = 78/126 (61%), Gaps = 1/126 (0%)

Query: 15  RKKKLSRKGNKKAATTNRTKDSGVEVIVRRDDTGDWIKPTTGEKFYIDEDALFPDVEFEF 74
           +K+K  ++  K A+TT   +DS V+ +++ +D+G+W++P TG+KF IDE   FP + FE 
Sbjct: 5   KKRKTEKRHVKHASTTGTDQDSLVKAVIQ-NDSGEWVRPATGDKFVIDETPKFPVITFEI 63

Query: 75  TTDVPGPYVWTWEMIWSAQVSSLSEKERGRTVKNLRRAGKFTQDGRHWNARSIGAVIGGT 134
            ++ P PY W W + W AQVS L EK RG+ +K     G F+ + + W A   G ++GG 
Sbjct: 64  KSEQPPPYQWKWTITWDAQVSGLREKPRGKKLKTFSDTGSFSSNDKTWVADLDGKILGGK 123

Query: 135 LRIVVQ 140
           L + V+
Sbjct: 124 LVVCVK 129


>ref|YP_001585680.1| hypothetical protein Bmul_5724 [Burkholderia multivorans ATCC
           17616]
 gb|ABX19388.1| hypothetical protein Bmul_5724 [Burkholderia multivorans ATCC
           17616]
          Length = 126

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 3/81 (3%)

Query: 217 IWSWKENVDAGIALLRQKRAAAKRDFEQQKPVSYTAEMLDTETITRWNGGKYHEWDEGKK 276
           +W+WKEN+  GI L ++K+  AK+D        YT + L   T +RWNG  Y+ WDE   
Sbjct: 1   MWNWKENIKVGIKLYQEKQGYAKKDLAGH---PYTEDQLIRATFSRWNGSVYYRWDEASN 57

Query: 277 KWVRQKSILCDSKTGNVGWNI 297
            WV   +I+CD  T N+GW++
Sbjct: 58  AWVPNGTIMCDPDTSNIGWDM 78


>ref|YP_971753.1| hypothetical protein Aave_3422 [Acidovorax citrulli AAC00-1]
 gb|ABM33979.1| hypothetical protein Aave_3422 [Acidovorax citrulli AAC00-1]
          Length = 342

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 47/209 (22%)

Query: 121 HWNARSIGAVIGGTLRIVVQVGQQEFIRTVKVLAKQPGADRIKAHIRERNEPLMEKLIHQ 180
           H  AR  GA    TL  ++  G       ++  A   GA +++            K + Q
Sbjct: 121 HVIARVGGATHEATLGSLLIAGTNPTPTAIRAFADSIGATKVR----------FRKQLRQ 170

Query: 181 ESRFKHVINNDLEPIVAGDR--GFGVVQLSNPMPSYSQIWSWKENVDAGIALLRQKR--- 235
           ES  +     +L P  + DR  G G+ Q++ P P+  Q+W+WKEN+ AG AL ++K    
Sbjct: 171 ESSLQQFRPPELWPKYSSDRLGGVGLAQITRPAPTADQVWNWKENIRAGWALYKEKERNA 230

Query: 236 ----AAAKRDFEQQKPVS--------------------YTAEMLDTETITRWNG--GKYH 269
               AA +R  E +  V+                    +T + L+ +TI  +NG   K H
Sbjct: 231 RAYPAAVRRSDEFRHLVNAYNQARARQGLPPVQVTLPDFTEDQLELDTIRGFNGYANKLH 290

Query: 270 EW---DEGKKKWVRQKSILCDSKTGNVGW 295
           E+    E  K +V   ++  D K G+  W
Sbjct: 291 EYRVRTEAGKLFV---TLGPDGKQGSAEW 316