BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4899.p (344 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_555989.1| GntR family transcriptional regulator [Burkhold... 243 3e-62 ref|YP_004686821.1| GntR family transcriptional regulator [Cupri... 230 2e-58 ref|YP_002006539.1| GntR family transcriptional regulator [Cupri... 229 6e-58 ref|YP_727515.1| GntR family transcriptional regulator [Ralstoni... 228 8e-58 ref|YP_004418154.1| GntR family transcriptional regulator [Pusil... 224 2e-56 >ref|YP_555989.1| GntR family transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE36639.1| transcriptional regulator, GntR family [Burkholderia xenovorans LB400] Length = 242 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 121/216 (56%), Positives = 164/216 (75%) Query: 127 DAIYERIVGAIMEHRLTPGTKLVEEKLAGIFSVNRTRVREVLARLAHEGLITTIPNRGAF 186 D IY RI+ A+MEHRL PGTKLVEEKLA +F VNRT++R++LARL HEG++TTIPNRGA+ Sbjct: 27 DTIYGRILTAVMEHRLIPGTKLVEEKLANVFKVNRTQIRKILARLTHEGIVTTIPNRGAY 86 Query: 187 VASPTPEEARNIFAARRLLEPALLRHLCEHTRPEHIALLRAHVAEEAQARASNDRRAIIR 246 +ASP+ ++AR++F ARR+LEPAL+R L E + L AHVA+E AR D+ A+IR Sbjct: 87 IASPSVQDARHVFEARRILEPALIRTLVERANVDDFRRLHAHVAKERAARDKGDKHAVIR 146 Query: 247 LSGEFHIRIADMVDNPVMSKMMRELASLTCLIIVLYDSPTVPACTHDDHGDIIDAISAGR 306 LSGEFH+ IA+M +P ++++MRELASLTCLII+L+DSP VPAC + +H II+ + G Sbjct: 147 LSGEFHLLIAEMAGSPPLTRLMRELASLTCLIILLFDSPNVPACPNHEHTGIIEHMEKGD 206 Query: 307 TEDAVATMLAHLHHIESVLDMSAPQGEDEDLEALLG 342 + AVA + HL HIE+ LD++ P+ + DL A+ G Sbjct: 207 IDGAVAAAIGHLDHIEATLDLALPEDIEVDLSAIFG 242 >ref|YP_004686821.1| GntR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI78340.1| transcriptional regulator GntR family [Cupriavidus necator N-1] Length = 245 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 126/227 (55%), Positives = 155/227 (68%) Query: 118 AFSVRPLAGDAIYERIVGAIMEHRLTPGTKLVEEKLAGIFSVNRTRVREVLARLAHEGLI 177 A S R + +AI +RI+ AI EHRL PGTKLVEEKL G+F V+RT+VR A+LAHEG++ Sbjct: 19 ADSARGASVEAIADRILTAIWEHRLPPGTKLVEEKLGGVFGVSRTKVRLAFAKLAHEGVL 78 Query: 178 TTIPNRGAFVASPTPEEARNIFAARRLLEPALLRHLCEHTRPEHIALLRAHVAEEAQARA 237 T PNRG FV+SP+ EAR + +R LLEPAL+R L + LR +EAQAR Sbjct: 79 TVHPNRGTFVSSPSVAEARQVLHSRHLLEPALVRDLAGAIGAPGVRALRETTRQEAQARD 138 Query: 238 SNDRRAIIRLSGEFHIRIADMVDNPVMSKMMRELASLTCLIIVLYDSPTVPACTHDDHGD 297 SNDRRAIIRLSGEFH ++A+M N + K MREL SLTCLII LYD+P VP+C H +H D Sbjct: 139 SNDRRAIIRLSGEFHCKLAEMTGNQYLGKYMRELCSLTCLIIALYDAPGVPSCPHHEHDD 198 Query: 298 IIDAISAGRTEDAVATMLAHLHHIESVLDMSAPQGEDEDLEALLGMV 344 I+DA+ AG E A M HL H+ES L + AP E DLEA+ V Sbjct: 199 IVDALEAGDGERAARLMTEHLGHVESTLRLQAPAEEKVDLEAVFAAV 245 >ref|YP_002006539.1| GntR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] emb|CAQ70478.1| putative TRANSCRIPTIONal REGULATOR, GntR family [Cupriavidus taiwanensis LMG 19424] Length = 247 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 128/246 (52%), Positives = 157/246 (63%) Query: 99 PRKKTSKHEHPDTSPLPGQAFSVRPLAGDAIYERIVGAIMEHRLTPGTKLVEEKLAGIFS 158 PR K P A R + +AI +RI+ AI EHRL PGTKLVEEKL G+F Sbjct: 2 PRTKAEPAARPTDGLPDTDADGARGASVEAIADRILTAIWEHRLPPGTKLVEEKLGGVFG 61 Query: 159 VNRTRVREVLARLAHEGLITTIPNRGAFVASPTPEEARNIFAARRLLEPALLRHLCEHTR 218 V+RT+VR A+LAHEG++T PNRG FV+SP+ EAR + +R LLEPAL+R L Sbjct: 62 VSRTKVRLAFAKLAHEGVLTVHPNRGTFVSSPSVAEARQVLHSRHLLEPALVRDLAGAIS 121 Query: 219 PEHIALLRAHVAEEAQARASNDRRAIIRLSGEFHIRIADMVDNPVMSKMMRELASLTCLI 278 + LR +EAQAR SNDRRAIIRLSGEFH ++A+M N + K MREL SLTCLI Sbjct: 122 ASGVRALRETTRQEAQARDSNDRRAIIRLSGEFHCKLAEMTGNQYLGKYMRELCSLTCLI 181 Query: 279 IVLYDSPTVPACTHDDHGDIIDAISAGRTEDAVATMLAHLHHIESVLDMSAPQGEDEDLE 338 I LYD+P VP+C H +H DI+DA+ AG E A M HL H+ES L + P E DLE Sbjct: 182 IALYDAPGVPSCPHHEHDDIVDALEAGDGERAARLMAEHLGHVESTLRLELPAEEKVDLE 241 Query: 339 ALLGMV 344 A+ V Sbjct: 242 AVFAAV 247 >ref|YP_727515.1| GntR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ94147.1| transcriptional regulator, GntR-family [Ralstonia eutropha H16] Length = 245 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 124/225 (55%), Positives = 153/225 (68%) Query: 120 SVRPLAGDAIYERIVGAIMEHRLTPGTKLVEEKLAGIFSVNRTRVREVLARLAHEGLITT 179 S R + +AI +RI+ AI EHRL PGTKLVEEKL G+F V+RT+VR A+LAHEG++T Sbjct: 21 SARGASVEAIADRILTAIWEHRLPPGTKLVEEKLGGVFGVSRTKVRLAFAKLAHEGVLTV 80 Query: 180 IPNRGAFVASPTPEEARNIFAARRLLEPALLRHLCEHTRPEHIALLRAHVAEEAQARASN 239 PNRG FV+SP+ EAR + +R LLEPAL+R L + LR +EAQAR SN Sbjct: 81 HPNRGTFVSSPSVAEARQVLHSRHLLEPALVRDLAGAIGAPGVRALRETTRQEAQARDSN 140 Query: 240 DRRAIIRLSGEFHIRIADMVDNPVMSKMMRELASLTCLIIVLYDSPTVPACTHDDHGDII 299 DRRAIIRLSGEFH ++A+M N + K MREL SLTCLII LYD+P VP+C H +H DI+ Sbjct: 141 DRRAIIRLSGEFHCKLAEMTGNQYLGKYMRELCSLTCLIIALYDAPGVPSCPHHEHDDIV 200 Query: 300 DAISAGRTEDAVATMLAHLHHIESVLDMSAPQGEDEDLEALLGMV 344 DA+ AG E A M HL H+ES L + P E DLEA+ V Sbjct: 201 DALEAGDGERAARLMAEHLGHVESTLRLELPAEEKVDLEAVFAAV 245 >ref|YP_004418154.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7] gb|AEC21530.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7] Length = 246 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 115/219 (52%), Positives = 150/219 (68%) Query: 124 LAGDAIYERIVGAIMEHRLTPGTKLVEEKLAGIFSVNRTRVREVLARLAHEGLITTIPNR 183 + G+AIY+RI I+E RL PG KL EE+LA + V+R ++R+VLARLAHE ++T IPNR Sbjct: 27 MDGEAIYQRIQTGILERRLLPGAKLAEERLAEVTGVSRAKIRQVLARLAHEQVVTLIPNR 86 Query: 184 GAFVASPTPEEARNIFAARRLLEPALLRHLCEHTRPEHIALLRAHVAEEAQARASNDRRA 243 GA+VA PT EEAR +F ARRLLEP+L+ LC P +IA+LR H+A+E AR + D R+ Sbjct: 87 GAYVARPTVEEAREMFEARRLLEPSLVAKLCHQATPGNIAVLRDHIAKEQHARQTGDLRS 146 Query: 244 IIRLSGEFHIRIADMVDNPVMSKMMRELASLTCLIIVLYDSPTVPACTHDDHGDIIDAIS 303 IIRLSGEFHI + DMV + ++ +++REL +LTCLII LYD PT PAC +H D++D I Sbjct: 147 IIRLSGEFHIHLVDMVSSGILKRVIRELTALTCLIITLYDKPTAPACPQSEHTDLVDLIE 206 Query: 304 AGRTEDAVATMLAHLHHIESVLDMSAPQGEDEDLEALLG 342 A E A ML HL HIE LD+ D E + Sbjct: 207 ARDAEGARQHMLNHLLHIEHTLDLDGELQAAPDFETIFA 245