BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4898.p (346 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001527291.1| ABC transporter substrate-binding protein [A... 402 e-110 ref|NP_769931.1| ABC transporter substrate-binding protein [Brad... 388 e-106 ref|YP_555990.1| nitrate/sulfonate/bicarbonate ABC transporter p... 383 e-104 ref|YP_001242360.1| ABC transporter substrate-binding protein [B... 383 e-104 ref|YP_001203615.1| ABC transporter substrate-binding protein [B... 380 e-103 >ref|YP_001527291.1| ABC transporter substrate-binding protein [Azorhizobium caulinodans ORS 571] dbj|BAF90373.1| ABC transporter substrate binding protein [Azorhizobium caulinodans ORS 571] Length = 339 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 194/314 (61%), Positives = 241/314 (76%) Query: 33 AMAQAKPKIKLAYAKCAHCMSMAMVPGLAQNVEIEGINFTAGSDALTALVSKSVDIAQVT 92 A AQ++P IKL YAKCAHC + +VP A+ ++E I F G+D LTAL+SKS+D+AQVT Sbjct: 26 ARAQSEPTIKLGYAKCAHCTPLVLVPDYAKGAKVEAIGFNTGNDVLTALLSKSIDVAQVT 85 Query: 93 YLAYVSGLDKGFDLVAVSGQVNGGSEMLVGKDSKLASDDWAGLKKLIAQYKAEGKPFRIA 152 YL Y++ LDKGFD+VA+SGQV GGS+++V D L +DW GLK LIA+YKAEGKPFR+A Sbjct: 86 YLHYITALDKGFDVVAISGQVEGGSQIVVQNDLPLKENDWDGLKALIAKYKAEGKPFRVA 145 Query: 153 ASRGNAQDLHMRGELAGHGIDPSKDVQFVNIPNPSDHAAALSRGEVELICSVEPFASQIR 212 ASRGNAQD+HMRG A HGID +KDVQF+NIPNPSDH AL RGEVELIC+VEPFA+QI Sbjct: 146 ASRGNAQDIHMRGAFAKHGIDVNKDVQFINIPNPSDHIQALRRGEVELICTVEPFATQIV 205 Query: 213 MTGVGKHFAYPYDQAAGRLTNLIVTRSDVIKEHPAEVKETVAAVVRLVDGLQKDKQGWIN 272 K FAYPYDQAAG LTNL++TRSDV+ +P ++ TV A+V + + + +DK W+ Sbjct: 206 QANAAKLFAYPYDQAAGNLTNLMLTRSDVVAANPKGLESTVKAIVDIDNKIAQDKPLWVG 265 Query: 273 SIVKGTGLDPKIATEALNNAYPDYRMYRTQTKAIAGMMKDLKYVSTDVSALAEKNMDYSF 332 I K TGLD +A A+NN PDY+MYR + AIA MM+DLKY+S DVSA EKN++Y F Sbjct: 266 VITKVTGLDKTVAEGAINNLMPDYKMYRKEALAIATMMRDLKYISNDVSAQVEKNLNYQF 325 Query: 333 LMSVTGKPKTELGY 346 L + TGKPKTELGY Sbjct: 326 LEAATGKPKTELGY 339 >ref|NP_769931.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48556.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 334 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 198/326 (60%), Positives = 243/326 (74%), Gaps = 1/326 (0%) Query: 22 LVACSTLGAGSAMAQAK-PKIKLAYAKCAHCMSMAMVPGLAQNVEIEGINFTAGSDALTA 80 LV + + GS +A A+ KIKL YAKCAHC+ M+++ G+A+ VE+E F +G+D LTA Sbjct: 9 LVVMAAMFGGSDLASAQTAKIKLGYAKCAHCLPMSLIAGMAKGVEVEATGFNSGNDVLTA 68 Query: 81 LVSKSVDIAQVTYLAYVSGLDKGFDLVAVSGQVNGGSEMLVGKDSKLASDDWAGLKKLIA 140 LVSKS+D+AQVTYL Y++ LDKGFD+VAVSGQ+NGGSE L L +DW K Sbjct: 69 LVSKSIDVAQVTYLHYITALDKGFDVVAVSGQINGGSECLSSAKLNLPPEDWTTFKTTAL 128 Query: 141 QYKAEGKPFRIAASRGNAQDLHMRGELAGHGIDPSKDVQFVNIPNPSDHAAALSRGEVEL 200 + K++G+P ++AASRGNAQD+HMRG G+DP+KD+QF+NIPNPSDH AAL RGEV++ Sbjct: 129 KAKSDGQPLKVAASRGNAQDIHMRGAFLKQGVDPNKDIQFINIPNPSDHLAALQRGEVDM 188 Query: 201 ICSVEPFASQIRMTGVGKHFAYPYDQAAGRLTNLIVTRSDVIKEHPAEVKETVAAVVRLV 260 ICSVEPFASQIR+ G GKHF PYDQAAG LTNLIVTRSDVI A V+ V+AVV L Sbjct: 189 ICSVEPFASQIRLAGAGKHFVLPYDQAAGNLTNLIVTRSDVIASQRAGVQGVVSAVVELD 248 Query: 261 DGLQKDKQGWINSIVKGTGLDPKIATEALNNAYPDYRMYRTQTKAIAGMMKDLKYVSTDV 320 + L DK WI I K TGLD +ATEAL NA PD ++R+QT AIA MM+DLKY++ DV Sbjct: 249 NKLIADKGPWIEVINKLTGLDKTVATEALKNASPDPAIHRSQTLAIAAMMRDLKYIAKDV 308 Query: 321 SALAEKNMDYSFLMSVTGKPKTELGY 346 SA AEKNMDYSFL TGK K +LGY Sbjct: 309 SAEAEKNMDYSFLEQATGKAKNDLGY 334 >ref|YP_555990.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein [Burkholderia xenovorans LB400] gb|ABE36640.1| ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein [Burkholderia xenovorans LB400] Length = 346 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 191/333 (57%), Positives = 247/333 (74%), Gaps = 1/333 (0%) Query: 14 IKALALASLVACSTLGAGSAMAQAKPKIKLAYAKCAHCMSMAMVPGLAQNVEIEGINFTA 73 + +L + VA + L + S A+P + L YAKCAHC +++ P A V++ I F Sbjct: 15 VHSLIVPLTVAAAFLPSASHAKDAEP-VMLGYAKCAHCTPLSLTPQYATGVKLSAIPFNT 73 Query: 74 GSDALTALVSKSVDIAQVTYLAYVSGLDKGFDLVAVSGQVNGGSEMLVGKDSKLASDDWA 133 G+D LTAL+SKS+D+AQVTYL YV+ LDKGF +VA+SGQ+NGGS++LV + + S DW Sbjct: 74 GNDVLTALLSKSIDVAQVTYLHYVTALDKGFKVVAISGQINGGSQILVANNLPVQSGDWD 133 Query: 134 GLKKLIAQYKAEGKPFRIAASRGNAQDLHMRGELAGHGIDPSKDVQFVNIPNPSDHAAAL 193 GLKKLI +YK EGKPFR+AASRGNAQD+HMRG HGID +KDVQFVNIPNP+DH AL Sbjct: 134 GLKKLIMEYKKEGKPFRVAASRGNAQDIHMRGAFLTHGIDVNKDVQFVNIPNPADHVQAL 193 Query: 194 SRGEVELICSVEPFASQIRMTGVGKHFAYPYDQAAGRLTNLIVTRSDVIKEHPAEVKETV 253 RGEVELI SVEP+A+QIR K FA+PYDQ+AG+L+NLI+TR DVI+ +P V ETV Sbjct: 194 RRGEVELITSVEPYATQIREVKAAKFFAFPYDQSAGKLSNLIITRPDVIQNNPQGVLETV 253 Query: 254 AAVVRLVDGLQKDKQGWINSIVKGTGLDPKIATEALNNAYPDYRMYRTQTKAIAGMMKDL 313 A+V++ D + +K +I++I K TGLD +AT A++N PDYRMYRT AIA MM +L Sbjct: 254 RAIVKVDDLMASNKPLFIDTIQKVTGLDKVVATGAVDNLEPDYRMYRTPAVAIAKMMHEL 313 Query: 314 KYVSTDVSALAEKNMDYSFLMSVTGKPKTELGY 346 KYV++DVS + N+DYSFL VTGKPK++LGY Sbjct: 314 KYVNSDVSDAVQNNLDYSFLEKVTGKPKSQLGY 346 >ref|YP_001242360.1| ABC transporter substrate-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ38454.1| Putative ABC transporter (substrate-binding protein) [Bradyrhizobium sp. BTAi1] Length = 335 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 193/314 (61%), Positives = 235/314 (74%) Query: 33 AMAQAKPKIKLAYAKCAHCMSMAMVPGLAQNVEIEGINFTAGSDALTALVSKSVDIAQVT 92 + A+ PKIKL YAKCAHC M++ P A+ V I+ + F G+DALTALVSK++D+AQVT Sbjct: 22 SFAEDAPKIKLGYAKCAHCTPMSLTPQFAEGVAIDAVGFNTGTDALTALVSKNIDVAQVT 81 Query: 93 YLAYVSGLDKGFDLVAVSGQVNGGSEMLVGKDSKLASDDWAGLKKLIAQYKAEGKPFRIA 152 YL Y LDKGFD+VA+SGQVNGGS +L+G D +A DW LK LIA+YKA+GKPFR+A Sbjct: 82 YLHYAIALDKGFDVVAISGQVNGGSAILLGNDLDVAQGDWGALKALIAKYKADGKPFRVA 141 Query: 153 ASRGNAQDLHMRGELAGHGIDPSKDVQFVNIPNPSDHAAALSRGEVELICSVEPFASQIR 212 ASRGNAQD+HMRG A GID +KDVQFVNIPNPSDH AL RGEVELIC+VEPFA+QI Sbjct: 142 ASRGNAQDIHMRGAFAKQGIDINKDVQFVNIPNPSDHLQALRRGEVELICTVEPFATQIM 201 Query: 213 MTGVGKHFAYPYDQAAGRLTNLIVTRSDVIKEHPAEVKETVAAVVRLVDGLQKDKQGWIN 272 K F +PYDQAAG+LTNLI+TRSDVI +P ++ V AVV++ + DK I Sbjct: 202 QAKAAKFFGFPYDQAAGKLTNLILTRSDVIASNPKGLEGVVRAVVKVDAHIAADKPALIE 261 Query: 273 SIVKGTGLDPKIATEALNNAYPDYRMYRTQTKAIAGMMKDLKYVSTDVSALAEKNMDYSF 332 I K TGLD IAT A+ N PD +MYR+ AIA MM+DLKY+++DV+A EKN+DY F Sbjct: 262 VISKVTGLDKAIATGAVENLDPDPKMYRSSALAIAAMMRDLKYINSDVTAAVEKNLDYRF 321 Query: 333 LMSVTGKPKTELGY 346 L + TGKPKTELGY Sbjct: 322 LEAATGKPKTELGY 335 >ref|YP_001203615.1| ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL75378.1| Putative ABC transporter (substrate-binding protein) [Bradyrhizobium sp. ORS 278] Length = 333 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 195/328 (59%), Positives = 242/328 (73%), Gaps = 1/328 (0%) Query: 19 LASLVACSTLGAGSAMAQAKPKIKLAYAKCAHCMSMAMVPGLAQNVEIEGINFTAGSDAL 78 L S++A L A + A+ PKIKL YAKCAHC M++ P A+ V I+ + F G+DAL Sbjct: 7 LLSILAVLML-ALPSFAEDAPKIKLGYAKCAHCTPMSLTPQFAEGVAIDAVGFNTGTDAL 65 Query: 79 TALVSKSVDIAQVTYLAYVSGLDKGFDLVAVSGQVNGGSEMLVGKDSKLASDDWAGLKKL 138 TALVSK++D+AQVTYL Y LDKGFD+VA+SGQVNGGS +L+ D ++A DW+ LK L Sbjct: 66 TALVSKNIDVAQVTYLHYAIALDKGFDVVAISGQVNGGSAILLANDLEIAQGDWSALKAL 125 Query: 139 IAQYKAEGKPFRIAASRGNAQDLHMRGELAGHGIDPSKDVQFVNIPNPSDHAAALSRGEV 198 I +YKA+GKPFR+AASRGNAQD+HMRG A GID +KDVQFVNIPNPSDH AL R EV Sbjct: 126 IVKYKADGKPFRVAASRGNAQDIHMRGAFAKQGIDINKDVQFVNIPNPSDHLQALRRSEV 185 Query: 199 ELICSVEPFASQIRMTGVGKHFAYPYDQAAGRLTNLIVTRSDVIKEHPAEVKETVAAVVR 258 ELIC+VEPFA+QI K F +PYDQAAG+LTNLI+TRSDVI +P ++ V AVV+ Sbjct: 186 ELICTVEPFATQIMQAKAAKFFGFPYDQAAGKLTNLILTRSDVIASNPKALEGVVRAVVK 245 Query: 259 LVDGLQKDKQGWINSIVKGTGLDPKIATEALNNAYPDYRMYRTQTKAIAGMMKDLKYVST 318 + + DK I+ I K TGLD IAT A+ N PD +MYR+ AIA MM+DLKY+++ Sbjct: 246 VDAHIAADKPALIDVISKVTGLDKAIATGAVENLDPDPKMYRSSALAIAAMMRDLKYINS 305 Query: 319 DVSALAEKNMDYSFLMSVTGKPKTELGY 346 DV+A EKN+DY FL + TGKPKTELGY Sbjct: 306 DVTAAVEKNLDYRFLEAATGKPKTELGY 333