BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4897.p (273 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769932.1| ABC transporter permease protein [Bradyrhizobiu... 329 3e-88 ref|YP_002490106.1| binding-protein-dependent transport systems ... 325 5e-87 ref|YP_555991.1| nitrate/sulfonate/bicarbonate ABC transporter i... 319 3e-85 ref|YP_001767462.1| binding-protein-dependent transport systems ... 315 4e-84 ref|YP_001527290.1| ABC transporter permease [Azorhizobium cauli... 308 6e-82 >ref|NP_769932.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48557.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 283 Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats. Identities = 179/258 (69%), Positives = 209/258 (81%) Query: 16 RFAVPLLLVLFWEAFSRSGVIPASLLPAPSRVFATWMDWIFGINEAAQDSSGKWIYDAMA 75 R VP LL+ WEAF+RSG++P +LLPAPS V DW+FG +E Q SG W+ DA+A Sbjct: 25 RVVVPALLIAGWEAFARSGMLPPALLPAPSAVLHALGDWVFGFDETTQTYSGHWLRDALA 84 Query: 76 SCLRVTAGYLIAALSGIALGVAIGWWRWVERTIEPTVQMLRPIPPVSWIPLAIIWFGIAN 135 S LRV G+ +A+ GI GVAIGW R E+T+EPT+QMLRPIPPVSWIPLAIIWFGIA+ Sbjct: 85 SALRVFGGFALASALGILAGVAIGWSRLFEKTLEPTLQMLRPIPPVSWIPLAIIWFGIAD 144 Query: 136 KPAIFLVFLGAFFPILMNTVHGVKTADRNLLRAAAMAGAKQSQLLRFVILPAAMPSIFAG 195 KPAIFLVFLGAFFP+LMN++HGVKT D NL+RA AM GA Q Q+L ++LPAA+PSIFAG Sbjct: 145 KPAIFLVFLGAFFPVLMNSIHGVKTVDHNLVRAGAMMGASQRQMLTDIVLPAALPSIFAG 204 Query: 196 LRIGIGSAWMLTVTAEMVAVKSGLGYALWDSYYFLRYDLVIAAMISIGLLGFLADWILKQ 255 LRI +GSAWMLTVTAEMVAVKSGLGY LWDSYYFLRYD+V+AAMISIGLLG+L+D LK Sbjct: 205 LRIAVGSAWMLTVTAEMVAVKSGLGYVLWDSYYFLRYDIVLAAMISIGLLGYLSDLGLKA 264 Query: 256 IMHSMLRWQHVATVQGKA 273 IM LRWQ TVQG+A Sbjct: 265 IMARTLRWQQTTTVQGRA 282 >ref|YP_002490106.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium nodulans ORS 2060] gb|ACL62939.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium nodulans ORS 2060] Length = 283 Score = 325 bits (833), Expect = 5e-87, Method: Composition-based stats. Identities = 175/257 (68%), Positives = 211/257 (82%) Query: 16 RFAVPLLLVLFWEAFSRSGVIPASLLPAPSRVFATWMDWIFGINEAAQDSSGKWIYDAMA 75 R VP+L++ WEAFSRSG +P SLLP PS V DW+ G++ + QD SG W+ A++ Sbjct: 25 RVVVPVLILAGWEAFSRSGYLPQSLLPPPSAVLHALGDWVLGVDGSTQDYSGTWLRHALS 84 Query: 76 SCLRVTAGYLIAALSGIALGVAIGWWRWVERTIEPTVQMLRPIPPVSWIPLAIIWFGIAN 135 S RV AG++IA LSGI +G AIGW R E+T+EPT+QMLRP+PPVSWIPLAIIWFGIA+ Sbjct: 85 STWRVLAGFVIAGLSGILIGTAIGWSRSAEKTLEPTLQMLRPVPPVSWIPLAIIWFGIAD 144 Query: 136 KPAIFLVFLGAFFPILMNTVHGVKTADRNLLRAAAMAGAKQSQLLRFVILPAAMPSIFAG 195 KPAIFLVFLGAFFP LMNT+HGVKT DRNL+RA AM GA QLL +++PAA+PSIFAG Sbjct: 145 KPAIFLVFLGAFFPTLMNTIHGVKTIDRNLIRAGAMMGATGRQLLMHIVVPAALPSIFAG 204 Query: 196 LRIGIGSAWMLTVTAEMVAVKSGLGYALWDSYYFLRYDLVIAAMISIGLLGFLADWILKQ 255 LRI IGSAWMLTVTAEMVAVKSG+GY LWDSYYFLRYD+VIA+M+SIGLLG+L+D+ +KQ Sbjct: 205 LRIAIGSAWMLTVTAEMVAVKSGVGYVLWDSYYFLRYDMVIASMVSIGLLGYLSDFAIKQ 264 Query: 256 IMHSMLRWQHVATVQGK 272 +M +LRWQ TVQG+ Sbjct: 265 LMSVVLRWQRNTTVQGR 281 >ref|YP_555991.1| nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein [Burkholderia xenovorans LB400] gb|ABE36641.1| ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit [Burkholderia xenovorans LB400] Length = 273 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 168/257 (65%), Positives = 209/257 (81%) Query: 16 RFAVPLLLVLFWEAFSRSGVIPASLLPAPSRVFATWMDWIFGINEAAQDSSGKWIYDAMA 75 R VP+LL+ WEAFSRSG++PA+LLPAPS+V W DWIF + Q SG W++D A Sbjct: 15 RGIVPVLLLAGWEAFSRSGILPAALLPAPSQVLIAWADWIFATDGNTQTYSGHWLFDIAA 74 Query: 76 SCLRVTAGYLIAALSGIALGVAIGWWRWVERTIEPTVQMLRPIPPVSWIPLAIIWFGIAN 135 S RV AG+ IA + G+A+G+AIGW R VE +EPT+Q LRP+PPVSWIPLAIIWFGIAN Sbjct: 75 SSGRVFAGFGIATVLGVAIGMAIGWSRAVESLVEPTLQTLRPVPPVSWIPLAIIWFGIAN 134 Query: 136 KPAIFLVFLGAFFPILMNTVHGVKTADRNLLRAAAMAGAKQSQLLRFVILPAAMPSIFAG 195 KPAIFLVF+G+FFP+L++T+HGVKT DR+LLRA AM G LLR ++ PAA+PSIF+G Sbjct: 135 KPAIFLVFMGSFFPVLLSTIHGVKTCDRDLLRAGAMTGGSPQMLLRHIVFPAALPSIFSG 194 Query: 196 LRIGIGSAWMLTVTAEMVAVKSGLGYALWDSYYFLRYDLVIAAMISIGLLGFLADWILKQ 255 LRI IGSAWMLTVTAEMVAVKSG+GY LWDSYYFLRYD+VIA+M+SIGLLGF +D+++K+ Sbjct: 195 LRIAIGSAWMLTVTAEMVAVKSGVGYVLWDSYYFLRYDIVIASMVSIGLLGFASDYVIKR 254 Query: 256 IMHSMLRWQHVATVQGK 272 I +LRWQ +T+Q + Sbjct: 255 IAARILRWQRGSTLQAR 271 >ref|YP_001767462.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium sp. 4-46] gb|ACA15028.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium sp. 4-46] Length = 288 Score = 315 bits (808), Expect = 4e-84, Method: Composition-based stats. Identities = 183/270 (67%), Positives = 219/270 (81%), Gaps = 7/270 (2%) Query: 3 MSGWKQSLSEAKWRFAVPLLLVLFWEAFSRSGVIPASLLPAPSRVFATWMDWIFGINEAA 62 ++GW + R A+PL+LV WEAF+RSG +P +LLPAPS V DW+ G++E+ Sbjct: 26 LAGWAE-------RAALPLVLVAGWEAFARSGALPPALLPAPSAVLHALADWMLGLDEST 78 Query: 63 QDSSGKWIYDAMASCLRVTAGYLIAALSGIALGVAIGWWRWVERTIEPTVQMLRPIPPVS 122 Q SSG W DA+AS RV AGY IAAL G+ LGVAIGWWR VERT+EPT+QMLRPIPPVS Sbjct: 79 QSSSGHWPSDALASLSRVLAGYAIAALCGVGLGVAIGWWRLVERTVEPTLQMLRPIPPVS 138 Query: 123 WIPLAIIWFGIANKPAIFLVFLGAFFPILMNTVHGVKTADRNLLRAAAMAGAKQSQLLRF 182 WIPLAIIWFGIA++PAIFLVFLGAFFPILMNT+HGV++ DRNL+RA AM GA + QLL Sbjct: 139 WIPLAIIWFGIADRPAIFLVFLGAFFPILMNTIHGVRSVDRNLIRAGAMMGASERQLLAR 198 Query: 183 VILPAAMPSIFAGLRIGIGSAWMLTVTAEMVAVKSGLGYALWDSYYFLRYDLVIAAMISI 242 ++LPAA+P+I +GLRI IGSAWMLTVTAEMVAVKSGLGY LWDSYYFLRYD+V+AAMISI Sbjct: 199 IVLPAALPAIVSGLRIAIGSAWMLTVTAEMVAVKSGLGYVLWDSYYFLRYDIVLAAMISI 258 Query: 243 GLLGFLADWILKQIMHSMLRWQHVATVQGK 272 GLLG+L+D LK + ++L WQ TVQG+ Sbjct: 259 GLLGYLSDLCLKAVAATVLHWQRGTTVQGR 288 >ref|YP_001527290.1| ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF90372.1| ABC transporter permease protein [Azorhizobium caulinodans ORS 571] Length = 270 Score = 308 bits (789), Expect = 6e-82, Method: Composition-based stats. Identities = 179/256 (69%), Positives = 211/256 (82%) Query: 16 RFAVPLLLVLFWEAFSRSGVIPASLLPAPSRVFATWMDWIFGINEAAQDSSGKWIYDAMA 75 RF VP+L++ WE FSRSG +P +LLPAPS V W+DW+F I+ Q +G WI+D MA Sbjct: 12 RFVVPVLILAGWEMFSRSGALPPALLPAPSAVAWAWLDWVFDIDGNTQSYAGHWIFDVMA 71 Query: 76 SCLRVTAGYLIAALSGIALGVAIGWWRWVERTIEPTVQMLRPIPPVSWIPLAIIWFGIAN 135 S RV AG+ IA + + LGVAIGW R++E TIEPT+QMLRPIPPVSWIPLAIIWFGIA+ Sbjct: 72 STWRVAAGFGIATVMAVFLGVAIGWSRFIEVTIEPTLQMLRPIPPVSWIPLAIIWFGIAD 131 Query: 136 KPAIFLVFLGAFFPILMNTVHGVKTADRNLLRAAAMAGAKQSQLLRFVILPAAMPSIFAG 195 KPAIFLVFLGAFFPIL+NT+HGVKT DRNL+RA AM G Q QLLRF++LPAAMPSIFAG Sbjct: 132 KPAIFLVFLGAFFPILLNTIHGVKTVDRNLIRAGAMVGGGQRQLLRFIVLPAAMPSIFAG 191 Query: 196 LRIGIGSAWMLTVTAEMVAVKSGLGYALWDSYYFLRYDLVIAAMISIGLLGFLADWILKQ 255 LRIGIGSAWMLTVTAEMVAVKSG+GY LWDSYYFLRYD+V+AAM SIGLLG+L+D +++ Sbjct: 192 LRIGIGSAWMLTVTAEMVAVKSGVGYVLWDSYYFLRYDIVLAAMASIGLLGYLSDLLIRL 251 Query: 256 IMHSMLRWQHVATVQG 271 I +LRWQ T+ G Sbjct: 252 ISARVLRWQQGTTLSG 267