BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4895.p (242 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001527288.1| Asp/Glu racemase [Azorhizobium caulinodans O... 342 3e-92 gb|EGC99114.1| Asp/Glu/hydantoin racemase [Burkholderia sp. TJI49] 320 9e-86 ref|YP_001203618.1| putative Asp/Glu/Hydantoin racemase [Bradyrh... 318 4e-85 ref|YP_001861127.1| Asp/Glu/hydantoin racemase [Burkholderia phy... 311 4e-83 ref|ZP_07673766.1| Asp/Glu racemase [Ralstonia sp. 5_7_47FAA] >g... 310 9e-83 >ref|YP_001527288.1| Asp/Glu racemase [Azorhizobium caulinodans ORS 571] dbj|BAF90370.1| Asp/Glu racemase [Azorhizobium caulinodans ORS 571] Length = 241 Score = 342 bits (877), Expect = 3e-92, Method: Composition-based stats. Identities = 170/241 (70%), Positives = 191/241 (79%) Query: 1 MIPRTLLGMLTPSSNTTLEPVTTAMLADIPEASAHFGRFRVTEIALSNQALAQFDDSEIL 60 M R LLGMLTPSSNT LEPVT AM+A +PE SAHFGRF+VTEIALS+ AL QFDD+EIL Sbjct: 1 MTKRVLLGMLTPSSNTVLEPVTQAMVAGLPEVSAHFGRFKVTEIALSDTALKQFDDTEIL 60 Query: 61 RAAELLSHAKVGSIAWNGTSSGWLGFDADERLCRRITEATGIPACTSVLALNEIFDLTGV 120 RAAELL+HAKV I+WNGTSSGWLGF+ADERLC RIT ATGIPA TS+LALNEI G Sbjct: 61 RAAELLAHAKVDVISWNGTSSGWLGFEADERLCERITAATGIPANTSMLALNEILAAKGA 120 Query: 121 KRFGLVTPYLDDVQAAIIKNYAASGLECVSERHLRKQDNFSFSEVGAQELRAMVHEVAKD 180 K G VTPYLD VQ I+ NYAA G C +RHL QDNFSFSEV A++L AM +VA + Sbjct: 121 KTLGYVTPYLDAVQEKIVANYAALGHACKGDRHLNLQDNFSFSEVTAEQLSAMTRDVAAE 180 Query: 181 KPQAITIFCTNLRGAPLVEELEREVGIPIYDTISTVVWKSLQQAGADPSRIRGWGSLFRD 240 KP AI + CTNLR APLVE+LE E GIPIYDTI+T VWKSL+ AG D R+ GWGSLFRD Sbjct: 181 KPDAIAVICTNLRAAPLVEKLEAETGIPIYDTIATSVWKSLKMAGVDTRRVTGWGSLFRD 240 Query: 241 V 241 + Sbjct: 241 L 241 >gb|EGC99114.1| Asp/Glu/hydantoin racemase [Burkholderia sp. TJI49] Length = 242 Score = 320 bits (821), Expect = 9e-86, Method: Composition-based stats. Identities = 160/241 (66%), Positives = 185/241 (76%) Query: 1 MIPRTLLGMLTPSSNTTLEPVTTAMLADIPEASAHFGRFRVTEIALSNQALAQFDDSEIL 60 M RTLLGMLTPSSNT+LEP+T+AM+A +P SAHF RF VTEI+L+ AL QFDD +I+ Sbjct: 1 MKKRTLLGMLTPSSNTSLEPLTSAMVAGLPGVSAHFARFPVTEISLTGAALGQFDDDKII 60 Query: 61 RAAELLSHAKVGSIAWNGTSSGWLGFDADERLCRRITEATGIPACTSVLALNEIFDLTGV 120 +AA LL+ AKV IAWNGTSSGWLGF+ADERLCRRITEATGIPA TSVLALNEI + Sbjct: 61 QAAMLLADAKVDVIAWNGTSSGWLGFEADERLCRRITEATGIPATTSVLALNEILKKSNA 120 Query: 121 KRFGLVTPYLDDVQAAIIKNYAASGLECVSERHLRKQDNFSFSEVGAQELRAMVHEVAKD 180 FGLVTPYLDDVQ I+ NY SG +C++ERHL + NFSFSEV + MV EVA Sbjct: 121 HEFGLVTPYLDDVQTKIVDNYRRSGFDCIAERHLNLKVNFSFSEVPGDVIGNMVREVAAA 180 Query: 181 KPQAITIFCTNLRGAPLVEELEREVGIPIYDTISTVVWKSLQQAGADPSRIRGWGSLFRD 240 P+AI+IFCTNL A LV LE E GIPIYDTISTVVWKSLQ A D +++GWG LF + Sbjct: 181 GPRAISIFCTNLNAAHLVPALEEETGIPIYDTISTVVWKSLQLADYDTRQVKGWGRLFSE 240 Query: 241 V 241 V Sbjct: 241 V 241 >ref|YP_001203618.1| putative Asp/Glu/Hydantoin racemase [Bradyrhizobium sp. ORS 278] emb|CAL75381.1| Conserved hypothetical protein; putative Asp/Glu/Hydantoin racemase [Bradyrhizobium sp. ORS 278] Length = 242 Score = 318 bits (816), Expect = 4e-85, Method: Composition-based stats. Identities = 160/238 (67%), Positives = 180/238 (75%) Query: 1 MIPRTLLGMLTPSSNTTLEPVTTAMLADIPEASAHFGRFRVTEIALSNQALAQFDDSEIL 60 M RTLLGMLTPSSNT LEP+T+AM+A +P SAHF RF+VTEIALS ALAQFD S IL Sbjct: 1 MTKRTLLGMLTPSSNTALEPITSAMVAGLPNVSAHFSRFKVTEIALSTDALAQFDISNIL 60 Query: 61 RAAELLSHAKVGSIAWNGTSSGWLGFDADERLCRRITEATGIPACTSVLALNEIFDLTGV 120 RAAELL+HAKV I WNGTSSGWLGFDAD RLC +IT ATGIPA TS+LALNEI Sbjct: 61 RAAELLAHAKVDVIGWNGTSSGWLGFDADVRLCEQITAATGIPATTSMLALNEILTTAKA 120 Query: 121 KRFGLVTPYLDDVQAAIIKNYAASGLECVSERHLRKQDNFSFSEVGAQELRAMVHEVAKD 180 K GLVTPY DDVQA II NYA G+ C +RHL QDNFSF+EV E+ M+ EVA++ Sbjct: 121 KTLGLVTPYRDDVQARIIANYAKLGIACRGDRHLNLQDNFSFAEVTPTEIETMIREVARE 180 Query: 181 KPQAITIFCTNLRGAPLVEELEREVGIPIYDTISTVVWKSLQQAGADPSRIRGWGSLF 238 KP AI + CTN+R APL LE E GIPI DTI+TVVWKSL+ AG DP + WGSLF Sbjct: 181 KPDAIAVVCTNMRAAPLAARLELETGIPILDTIATVVWKSLKLAGVDPRGVSEWGSLF 238 >ref|YP_001861127.1| Asp/Glu/hydantoin racemase [Burkholderia phymatum STM815] gb|ACC74081.1| Asp/Glu/hydantoin racemase [Burkholderia phymatum STM815] Length = 242 Score = 311 bits (798), Expect = 4e-83, Method: Composition-based stats. Identities = 154/241 (63%), Positives = 183/241 (75%) Query: 1 MIPRTLLGMLTPSSNTTLEPVTTAMLADIPEASAHFGRFRVTEIALSNQALAQFDDSEIL 60 M R LLGMLTPSSNT LEP+T+AM+A +P SAHF RF VTEI+LS++AL QFD + I+ Sbjct: 1 MSKRVLLGMLTPSSNTALEPITSAMVAQLPGVSAHFSRFTVTEISLSDRALGQFDTTNII 60 Query: 61 RAAELLSHAKVGSIAWNGTSSGWLGFDADERLCRRITEATGIPACTSVLALNEIFDLTGV 120 +AA+LL+ AKV IAWNGTSSGWLGF+ D RLCR I ATGIPA TSVLALNEI D T V Sbjct: 61 QAAKLLADAKVDVIAWNGTSSGWLGFETDRRLCREIENATGIPATTSVLALNEILDKTRV 120 Query: 121 KRFGLVTPYLDDVQAAIIKNYAASGLECVSERHLRKQDNFSFSEVGAQELRAMVHEVAKD 180 K+FGLVTPYL +VQ I+ NY SG++C SE HL + NF FSEV LRA + EV K+ Sbjct: 121 KKFGLVTPYLKEVQQKIVANYRESGIDCSSENHLGLKVNFQFSEVTEDTLRAQIREVVKE 180 Query: 181 KPQAITIFCTNLRGAPLVEELEREVGIPIYDTISTVVWKSLQQAGADPSRIRGWGSLFRD 240 +P+AI FCTNL A L E+ER GIP+YDTISTVVWKSL+ AG D +R+ GWG LF + Sbjct: 181 RPEAIVTFCTNLHAAHLASEVERHHGIPLYDTISTVVWKSLKLAGYDTTRLAGWGRLFAE 240 Query: 241 V 241 V Sbjct: 241 V 241 >ref|ZP_07673766.1| Asp/Glu racemase [Ralstonia sp. 5_7_47FAA] gb|EFP67970.1| Asp/Glu racemase [Ralstonia sp. 5_7_47FAA] Length = 242 Score = 310 bits (795), Expect = 9e-83, Method: Composition-based stats. Identities = 156/241 (64%), Positives = 180/241 (74%) Query: 1 MIPRTLLGMLTPSSNTTLEPVTTAMLADIPEASAHFGRFRVTEIALSNQALAQFDDSEIL 60 M R LGMLTPSSNT LEP+T+AM++ +P SAHF RF VTEI+L +QAL QFD IL Sbjct: 1 MTKRIKLGMLTPSSNTALEPITSAMVSGLPNVSAHFSRFTVTEISLRDQALGQFDLENIL 60 Query: 61 RAAELLSHAKVGSIAWNGTSSGWLGFDADERLCRRITEATGIPACTSVLALNEIFDLTGV 120 AA+LL+ A V IAWNGTSSGWLGF+ DE LCR+ITEATGIPA TSVLALNEI TG Sbjct: 61 NAAKLLADAHVDVIAWNGTSSGWLGFEKDEALCRQITEATGIPATTSVLALNEILAKTGA 120 Query: 121 KRFGLVTPYLDDVQAAIIKNYAASGLECVSERHLRKQDNFSFSEVGAQELRAMVHEVAKD 180 + F LVTPYLDDVQ I++NYA G +CV+ERHL N SF++V +R +V EVA+ Sbjct: 121 RDFALVTPYLDDVQQRIVQNYARHGFKCVAERHLDLHVNHSFADVEEVTIRTLVREVAQQ 180 Query: 181 KPQAITIFCTNLRGAPLVEELEREVGIPIYDTISTVVWKSLQQAGADPSRIRGWGSLFRD 240 KP AIT FCTNLR A LVE LE E GIP+YDTISTVVWKSL+ AG D + GWG LF D Sbjct: 181 KPAAITTFCTNLRAAHLVEALEAETGIPVYDTISTVVWKSLRLAGVDTRELHGWGRLFAD 240 Query: 241 V 241 V Sbjct: 241 V 241