BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4893.p (533 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777159.1| methyl-accepting chemotaxis transducer trans... 842 0.0 ref|YP_003776623.1| methyl-accepting chemotaxis transducer trans... 483 e-134 ref|YP_004235422.1| methyl-accepting chemotaxis sensory transduc... 478 e-132 ref|YP_003752861.1| methyl-accepting chemotaxis transducer trans... 476 e-132 emb|CBJ38403.1| methyl-accepting chemotaxis transducer transmemb... 476 e-132 >ref|YP_003777159.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65251.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 532 Score = 842 bits (2174), Expect = 0.0, Method: Composition-based stats. Identities = 481/532 (90%), Positives = 510/532 (95%) Query: 2 MNRLSLKKKLWLPLVFSWIALLFLSVWHAYQTRDLQIAERQRGLEDVTEMAYTTVAGFAK 61 MN LSLKKKLWLPLVFSW+ALLFLSVWHAYQTRDLQIAER+RGL+DVTEMAYTT+AG+AK Sbjct: 1 MNNLSLKKKLWLPLVFSWMALLFLSVWHAYQTRDLQIAERERGLQDVTEMAYTTIAGYAK 60 Query: 62 LEADGKLSRAEAQQGAIARVRDQRYTGDGYATLVGADSTIVMHPINTKLDGRNMLSFKDA 121 LE+DGKLSR +AQ+ AIAR+RDQRYTGDGY TLV A+S IVMHPIN+KLDGRNML FKDA Sbjct: 61 LESDGKLSREDAQKAAIARIRDQRYTGDGYVTLVDANSVIVMHPINSKLDGRNMLDFKDA 120 Query: 122 KGNELYKMIAAAGASPAGKGFLEYWWPRPGSDKPSPKMGFVKRFKPWNWDLICSVYSDDI 181 KGNELYKMIAA G+S AGKG+LEYWWPRPGSD+PSPKMGFVKRFKPWNWDLICSVYSDDI Sbjct: 121 KGNELYKMIAATGSSGAGKGYLEYWWPRPGSDQPSPKMGFVKRFKPWNWDLICSVYSDDI 180 Query: 182 EADFRRALVQAVVVLVALGVLLSIIAGLVSRNIFRSIGGEPAEAAEMARKIAGGDLTGTI 241 +ADFRRAL+QAVVVL+ LGVLLS+IAG+VSRNIFRSIGGEP EAAEMARKIA GDLTG I Sbjct: 181 QADFRRALIQAVVVLIGLGVLLSLIAGMVSRNIFRSIGGEPGEAAEMARKIAAGDLTGVI 240 Query: 242 RTSGGDQHSLVAAVAYTRDRLVDTVHGIQGATTSIKTSVDEIANGNMDLSNRTEQQAGSL 301 T+ GD+HSLVAAVAYTRDRLVDTVHGI+ AT SIKTSVDEIA GNMDLSNRTEQQAGSL Sbjct: 241 HTTQGDEHSLVAAVAYTRDRLVDTVHGIKQATESIKTSVDEIATGNMDLSNRTEQQAGSL 300 Query: 302 EETASAMEELTSTVKQNAANAQHANELASGAAKVAIQGGEVVDQVVQTMASINASSRKIV 361 EETAS MEELT+TVKQNAANAQHAN+LASGAA+VAIQGGEVV QVVQTM SINASSRKIV Sbjct: 301 EETASTMEELTATVKQNAANAQHANQLASGAAQVAIQGGEVVGQVVQTMESINASSRKIV 360 Query: 362 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLID 421 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLID Sbjct: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLID 420 Query: 422 DSVGKVDAGTHLVQQAGQTMQEVVASIQGVSTVVSEIATASHEQSAGIEQVGEAITQMDE 481 DSVGKVDAGTHLVQ+AGQTMQEVV+SIQGVSTVVSEIATASHEQS+GIEQVGEAITQMDE Sbjct: 421 DSVGKVDAGTHLVQRAGQTMQEVVSSIQGVSTVVSEIATASHEQSSGIEQVGEAITQMDE 480 Query: 482 TTQQNAALVEQAAAAAQSLQEQADKLVNLVGVFTLERGRTAPAVTSAQPLLQ 533 TTQQNAALVEQAAAAAQSLQ+QADKLV LVGVFTLERGRTAPAVTSAQPLLQ Sbjct: 481 TTQQNAALVEQAAAAAQSLQDQADKLVRLVGVFTLERGRTAPAVTSAQPLLQ 532 >ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64715.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 302/528 (57%), Positives = 383/528 (72%), Gaps = 1/528 (0%) Query: 2 MNRLSLKKKLWLPLVFSWIALLFLSVWHAYQTRDLQIAERQRGLEDVTEMAYTTVAGFAK 61 M +LS KKLWLPLV S IALL +S++ A R++++ ER+ L ++ + A + V G+ Sbjct: 1 MGQLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGA 60 Query: 62 LEADGKLSRAEAQQGAIARVRDQRYTGDGYATLVGADSTIVMHPINTKLDGRNMLSFKDA 121 L G LS+ +AQ+ A ++ RY DGY ++ + IVMHPI T+LDG+++ +FKD Sbjct: 61 LADSGALSKEDAQKLAKQAIKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLSNFKDP 120 Query: 122 KGNELYKMIAAAGASPAGKGFLEYWWPRPGSDKPSPKMGFVKRFKPWNWDLICSVYSDDI 181 GN L+ I AG+ P G GF+ Y WP+ G+ +P PK FV +KPW+W+L Y DDI Sbjct: 121 AGNNLFVEITKAGSKPEG-GFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDI 179 Query: 182 EADFRRALVQAVVVLVALGVLLSIIAGLVSRNIFRSIGGEPAEAAEMARKIAGGDLTGTI 241 A F R L Q ++ A+ L + +++ I R+IGG+PA+AAE+A +IA GDLT I Sbjct: 180 NAAFLRTLWQMALLFAAVSAALVALVIVINHGILRTIGGDPAQAAEVANRIAQGDLTPNI 239 Query: 242 RTSGGDQHSLVAAVAYTRDRLVDTVHGIQGATTSIKTSVDEIANGNMDLSNRTEQQAGSL 301 T+ GD SL+ AV RD L+ T+ I+ + +I ++ EIA+GN+DLS RTEQQAGS+ Sbjct: 240 ETAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSI 299 Query: 302 EETASAMEELTSTVKQNAANAQHANELASGAAKVAIQGGEVVDQVVQTMASINASSRKIV 361 EETASAMEELT+TVKQNA NA+ AN+LA A++VAIQGG VV QVVQTM I SSRKI Sbjct: 300 EETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIA 359 Query: 362 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLID 421 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LID Sbjct: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLID 419 Query: 422 DSVGKVDAGTHLVQQAGQTMQEVVASIQGVSTVVSEIATASHEQSAGIEQVGEAITQMDE 481 DSV KVD G+ LV+QAG TM EVVAS++ V+ +V EI++AS EQSAGI +VG AITQMDE Sbjct: 420 DSVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDE 479 Query: 482 TTQQNAALVEQAAAAAQSLQEQADKLVNLVGVFTLERGRTAPAVTSAQ 529 TQQNAALVEQAAAAAQSLQ+QA L LVG F ++ + + A T+ Q Sbjct: 480 GTQQNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGSQASIAPTAPQ 527 >ref|YP_004235422.1| methyl-accepting chemotaxis sensory transducer with Cache sensor [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX46855.1| methyl-accepting chemotaxis sensory transducer with Cache sensor [Acidovorax avenae subsp. avenae ATCC 19860] Length = 536 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 298/516 (57%), Positives = 381/516 (73%) Query: 2 MNRLSLKKKLWLPLVFSWIALLFLSVWHAYQTRDLQIAERQRGLEDVTEMAYTTVAGFAK 61 M L+L++KLWLPLV + + L L+ +A+QTR LQ R+ L D+T+MA + V + K Sbjct: 1 MKHLTLRQKLWLPLVLALLGLFALTFVNAWQTRTLQYEARRTALADITDMALSVVGDYDK 60 Query: 62 LEADGKLSRAEAQQGAIARVRDQRYTGDGYATLVGADSTIVMHPINTKLDGRNMLSFKDA 121 GK+++ EA++ A RV QRY DGY T+VGADS +VMHPI +LDGRNMLSFKDA Sbjct: 61 QARSGKMTQEEARRAARERVAAQRYGKDGYVTIVGADSAMVMHPIKPELDGRNMLSFKDA 120 Query: 122 KGNELYKMIAAAGASPAGKGFLEYWWPRPGSDKPSPKMGFVKRFKPWNWDLICSVYSDDI 181 KG LY IAAAG+S G+GFLEYWWPRPGSD PSPK+G+ RFKPWNWDL+ Y DDI Sbjct: 121 KGTPLYVDIAAAGSSARGRGFLEYWWPRPGSDAPSPKIGYAVRFKPWNWDLVAGDYVDDI 180 Query: 182 EADFRRALVQAVVVLVALGVLLSIIAGLVSRNIFRSIGGEPAEAAEMARKIAGGDLTGTI 241 E FR L +A+ VL LG+ +S+I G V R+I RS+GGEPA AA+ A ++A GDL +I Sbjct: 181 EQTFRSTLYRALGVLALLGICISVITGFVVRDIERSVGGEPAAAAQAALRMAEGDLQASI 240 Query: 242 RTSGGDQHSLVAAVAYTRDRLVDTVHGIQGATTSIKTSVDEIANGNMDLSNRTEQQAGSL 301 GD SL+ A+ + RDRL + IQ AT +I + EIA GN DLS RTEQQA SL Sbjct: 241 ALRRGDDRSLMHAIGFMRDRLGHILQRIQQATGTIDHAAAEIAQGNADLSRRTEQQASSL 300 Query: 302 EETASAMEELTSTVKQNAANAQHANELASGAAKVAIQGGEVVDQVVQTMASINASSRKIV 361 ++TAS+MEELT+TV+QNA NA+ A + S A+ A QGGE V +VV++M +INASS KI Sbjct: 301 QQTASSMEELTATVRQNADNARQAAQYVSATAQTAAQGGEAVGRVVESMRAINASSGKIS 360 Query: 362 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLID 421 +II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA+AA+EIK LI Sbjct: 361 EIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSASAAREIKALIS 420 Query: 422 DSVGKVDAGTHLVQQAGQTMQEVVASIQGVSTVVSEIATASHEQSAGIEQVGEAITQMDE 481 +SV +V +G+ LV+QAG+TM +VV S+Q +S ++ IA+A+ +Q+AGIE+V A+TQMDE Sbjct: 421 ESVAEVRSGSDLVEQAGRTMGDVVDSVQRISGLMEGIASANAQQTAGIEEVNRAVTQMDE 480 Query: 482 TTQQNAALVEQAAAAAQSLQEQADKLVNLVGVFTLE 517 TQQNAA+VE+A+AA ++ Q L + + VF L+ Sbjct: 481 MTQQNAAMVEEASAATSAMAAQVAVLRDALAVFRLQ 516 >ref|YP_003752861.1| methyl-accepting chemotaxis transducer transmembrane protein [Ralstonia solanacearum PSI07] emb|CBJ51587.1| methyl-accepting chemotaxis transducer transmembrane protein [Ralstonia solanacearum PSI07] Length = 617 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 299/526 (56%), Positives = 380/526 (72%), Gaps = 3/526 (0%) Query: 2 MNRLSLKKKLWLPLVFSWIALLFLSVWHAYQTRDLQIAERQRGLEDVTEMAYTTVAGFAK 61 M++LS ++KLWLPL FS IAL +SV++AYQ R ++I ER+ L VT MA V + Sbjct: 1 MSKLSFRQKLWLPLAFSLIALTLMSVFNAYQARGIRIEERKNNLVSVTSMALNLVKQYDD 60 Query: 62 LEADGKLSRAEAQQGAIARVRDQRYTGDGYATLVGADSTIVMHPINTKLDGRNMLSFKDA 121 L G L+R EAQ+ A+ R R RY DGY T+ +D+ +VMHPI + G++ FKDA Sbjct: 61 LVRGGILTREEAQKQALDRFRSLRYDKDGYFTITRSDNVVVMHPIKPEFIGKDQTGFKDA 120 Query: 122 KGNELYKMIAAAGASPAGKGFLEYWWPRPGSDKPSPKMGFVKRFKPWNWDLICSVYSDDI 181 +GN +Y + +A P+G GF Y WP G + PK + +R++PW+W Y DDI Sbjct: 121 QGNSVYVNLTSAARQPSG-GFTSYVWPHVGGTEQVPKTAYAQRYEPWDWVFSTGAYMDDI 179 Query: 182 EADFRRALVQAVVVLVALGVLLSIIAGLVSRNIFRSIGGEPAEAAEMARKIAGGDLTGTI 241 A F +L A +L+ G +L ++AG+ +R + R++GG+PA AAE+A +IAGGDL+ I Sbjct: 180 NAAFMTSLYGAAGLLLLAGTVLVVLAGVANRGLQRALGGDPAYAAEVANRIAGGDLSVEI 239 Query: 242 RTSGGDQHSLVAAVAYTRDRLVDTVHGIQGATTSIKTSVDEIANGNMDLSNRTEQQAGSL 301 T D+ SL+ A+ R LV T+ I+GA+ +I T+ EIA+GN+DLS+RTEQQA SL Sbjct: 240 ATRPDDRDSLLYAMGRMRGALVQTIGRIRGASETIGTATREIASGNLDLSSRTEQQASSL 299 Query: 302 EETASAMEELTSTVKQNAANAQHANELASGAAKVAIQGGEVVDQVVQTMASINASSRKIV 361 EETASAMEEL STV+QNA NA AN+LA A+ VA++GG+VV +VV TM SINASSRKIV Sbjct: 300 EETASAMEELMSTVQQNADNANQANQLAVSASDVAVRGGDVVSRVVDTMGSINASSRKIV 359 Query: 362 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLID 421 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSAAAAKEIK LID Sbjct: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKTLID 419 Query: 422 DSVGKVDAGTHLVQQAGQTMQEVVASIQGVSTVVSEIATASHEQSAGIEQVGEAITQMDE 481 DSV VDAG+ LV++AG TM+E+VAS++ V+ +V EI AS EQ +GIE+V A+TQ+D+ Sbjct: 420 DSVTNVDAGSALVEEAGTTMREIVASVRRVTDIVGEITAASQEQRSGIEEVSHAVTQLDD 479 Query: 482 TTQQNAALVEQAAAAAQSLQEQADKLVNLVGVFTLERGRTAPAVTS 527 TQQNAALVEQAAAAAQSLQEQAD L +V F L+ T PAV S Sbjct: 480 ATQQNAALVEQAAAAAQSLQEQADSLTQVVAQFRLD--PTMPAVRS 523 >emb|CBJ38403.1| methyl-accepting chemotaxis transducer transmembrane protein [Ralstonia solanacearum CMR15] Length = 619 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 297/533 (55%), Positives = 381/533 (71%), Gaps = 3/533 (0%) Query: 2 MNRLSLKKKLWLPLVFSWIALLFLSVWHAYQTRDLQIAERQRGLEDVTEMAYTTVAGFAK 61 M++LS ++KLWLPL FS IAL +SV++AYQ R ++I ER+ L VT MA V + Sbjct: 1 MSKLSFRQKLWLPLAFSLIALTLMSVFNAYQARGIRIEERKNNLVSVTSMALNLVKQYDD 60 Query: 62 LEADGKLSRAEAQQGAIARVRDQRYTGDGYATLVGADSTIVMHPINTKLDGRNMLSFKDA 121 L G L++ AQQ A+ R R RY DGY T+ +D+ +VMHPI + G++ FKDA Sbjct: 61 LARGGVLTKEAAQQQALERFRSLRYDKDGYFTITRSDNVVVMHPIKPEFIGKDQTGFKDA 120 Query: 122 KGNELYKMIAAAGASPAGKGFLEYWWPRPGSDKPSPKMGFVKRFKPWNWDLICSVYSDDI 181 +GN +Y + +A P G GF Y WP G PK F +R++PW+W Y DDI Sbjct: 121 QGNSVYVNLTSAARQPNG-GFTSYVWPHVGGTALVPKTAFAQRYEPWDWVFSTGAYMDDI 179 Query: 182 EADFRRALVQAVVVLVALGVLLSIIAGLVSRNIFRSIGGEPAEAAEMARKIAGGDLTGTI 241 A F +L ++ +L+ G +L ++AG+ +R + R++GG+PA AAE+A +IAGGDL+ I Sbjct: 180 NAAFMTSLYESGGLLLLAGTVLVLLAGVANRGVQRTLGGDPAYAAEVANRIAGGDLSVEI 239 Query: 242 RTSGGDQHSLVAAVAYTRDRLVDTVHGIQGATTSIKTSVDEIANGNMDLSNRTEQQAGSL 301 T D+ SL+ A+ R LV T+ I+GA+ +I T+ EIA+GN+DLS+RTEQQA SL Sbjct: 240 ATRPDDRDSLLYAMGRMRGALVQTLGRIKGASETIGTATREIASGNLDLSSRTEQQASSL 299 Query: 302 EETASAMEELTSTVKQNAANAQHANELASGAAKVAIQGGEVVDQVVQTMASINASSRKIV 361 EETASAMEEL STV+QNA NA AN+LA A+ VA++GG+VV +VV+TM SINASSRKIV Sbjct: 300 EETASAMEELMSTVQQNADNANQANQLAVSASDVAVRGGDVVSRVVETMGSINASSRKIV 359 Query: 362 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLID 421 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSAAAAKEIK LID Sbjct: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALID 419 Query: 422 DSVGKVDAGTHLVQQAGQTMQEVVASIQGVSTVVSEIATASHEQSAGIEQVGEAITQMDE 481 DSV VDAG+ LV++AG TM+E+VAS++ V+ +V EI AS EQ +GIE+V A+TQ+D+ Sbjct: 420 DSVTNVDAGSTLVEEAGTTMREIVASVRRVTDIVGEITAASQEQRSGIEEVSHAVTQLDD 479 Query: 482 TTQQNAALVEQAAAAAQSLQEQADKLVNLVGVFTLERGRTA--PAVTSAQPLL 532 TQQNAALVEQAAAAAQSLQEQAD L +V F L+ +A V A+P + Sbjct: 480 ATQQNAALVEQAAAAAQSLQEQADSLTQVVAQFRLDPTMSAVRSVVAKAEPTI 532