BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4891.p (301 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777157.1| LysR family transcription regulator protein ... 521 e-146 ref|YP_558327.1| LysR family transcriptional regulator [Burkhold... 418 e-115 ref|YP_002980058.1| LysR family transcriptional regulator [Ralst... 378 e-103 ref|YP_001897664.1| LysR family transcriptional regulator [Ralst... 375 e-102 ref|ZP_02370645.1| transcriptional regulator, LysR family protei... 367 1e-99 >ref|YP_003777157.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65249.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 301 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 270/301 (89%), Positives = 285/301 (94%) Query: 1 MIRLEDLAIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP 60 MIRLEDLAIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP Sbjct: 1 MIRLEDLAIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP 60 Query: 61 DGERYLQYARNVLAEVNAGRDAVAHGRRVVGGNLSLSVPSDLGRNLMCQWLDEFLAQHPA 120 DGERYLQ+ARNVLAEVNAGRDAVAHGRRV+GGNLSLS PSD GRNL+ QWLDEF AQHPA Sbjct: 61 DGERYLQHARNVLAEVNAGRDAVAHGRRVIGGNLSLSAPSDFGRNLIGQWLDEFQAQHPA 120 Query: 121 VSLQVRISDRVADMFRQPVEVAIRYSPPEDSSLVALPLAPDNRRVLCASPDYLARHGRPR 180 VSLQV +SDRVADM+RQPV+VAIRYS P+DSSLVALPLAPDNRRVLCASPDYLARHGRPR Sbjct: 121 VSLQVHVSDRVADMYRQPVDVAIRYSAPDDSSLVALPLAPDNRRVLCASPDYLARHGRPR 180 Query: 181 TPADLRQHNCLRYLLSDMLHSQWTFFKDGTPVQVQVSGDRVCDDGELVHRWAVEGRGIAY 240 +PADLRQHNCLRY+LSD LHSQW FFKD PVQVQVSGDR CDDGELV RWAV GRGIAY Sbjct: 181 SPADLRQHNCLRYVLSDTLHSQWNFFKDDEPVQVQVSGDRTCDDGELVRRWAVNGRGIAY 240 Query: 241 KSRLDVLADLRNGKLEALMEDYQGEASPLNLVCTHRMSLSPTVRALRELLGERVARYLTD 300 KSRLDVLADLRNG+LEAL+EDY+GE SPL+LVCTHRM +SPTVRALRELLGER+ARYL D Sbjct: 241 KSRLDVLADLRNGRLEALLEDYEGEPSPLHLVCTHRMCVSPTVRALRELLGERIARYLKD 300 Query: 301 R 301 R Sbjct: 301 R 301 >ref|YP_558327.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE30275.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 299 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 215/298 (72%), Positives = 244/298 (81%) Query: 1 MIRLEDLAIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP 60 MIRLEDL IF+ AADNGSLSAAARQ D+TPAVAS +KRLE ELG RLLARSTRSLRLTP Sbjct: 1 MIRLEDLRIFLFAADNGSLSAAARQLDLTPAVASVGLKRLEAELGTRLLARSTRSLRLTP 60 Query: 61 DGERYLQYARNVLAEVNAGRDAVAHGRRVVGGNLSLSVPSDLGRNLMCQWLDEFLAQHPA 120 DGERYLQYARNV+ +V+AGR+AVAHGRR++GG +SLSVPSDLGR+ + +WLDEF Q+P Sbjct: 61 DGERYLQYARNVMEQVDAGRNAVAHGRRMIGGAVSLSVPSDLGRHALLEWLDEFQVQYPD 120 Query: 121 VSLQVRISDRVADMFRQPVEVAIRYSPPEDSSLVALPLAPDNRRVLCASPDYLARHGRPR 180 VSLQVRI D V DMFR P+ +AIRY PEDS+LVALPLAPDNRRVLCASP Y ARHGRP Sbjct: 121 VSLQVRIGDHVTDMFRAPIGLAIRYGVPEDSTLVALPLAPDNRRVLCASPAYFARHGRPE 180 Query: 181 TPADLRQHNCLRYLLSDMLHSQWTFFKDGTPVQVQVSGDRVCDDGELVHRWAVEGRGIAY 240 TPADLR+HNCLR+ LSD LH +WTFF G P V V G+R DDGELV RWAV G GIAY Sbjct: 181 TPADLRRHNCLRFALSDTLHDRWTFFSGGKPDVVSVRGNRSSDDGELVRRWAVAGFGIAY 240 Query: 241 KSRLDVLADLRNGKLEALMEDYQGEASPLNLVCTHRMSLSPTVRALRELLGERVARYL 298 KSRLDVL DLR G+LEA + + GE +PL+LVC HR LSPTV ALR+ L +R+ YL Sbjct: 241 KSRLDVLNDLRAGRLEAALTGFDGEGAPLHLVCAHRTMLSPTVNALRDFLLQRIGAYL 298 >ref|YP_002980058.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] gb|ACS61386.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] Length = 304 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 203/303 (66%), Positives = 245/303 (80%), Gaps = 3/303 (0%) Query: 1 MIRLEDLAIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP 60 MIR +DL I V A DNGSLSAAAR ++ PA ASAA+KRLE ELG RLLARSTRSL LT Sbjct: 1 MIRFDDLTILVLAVDNGSLSAAARVLNIAPAAASAAVKRLEAELGVRLLARSTRSLALTH 60 Query: 61 DGERYLQYARNVLAEVNAGRDAVAHGRRVVGGNLSLSVPSDLGRNLMCQWLDEFLAQHPA 120 +GERYLQ+AR LA++ AG+DA+A GR+ +GG++SLS+PSDLGRN++ WLD+FLA+HPA Sbjct: 61 EGERYLQHARRALADLQAGQDALALGRQAIGGDVSLSIPSDLGRNVLIGWLDDFLAEHPA 120 Query: 121 VSLQVRISDRVADMFRQPVEVAIRYSPPEDSSLVALPLAPDNRRVLCASPDYLARHGRPR 180 V+LQVRI DR+ DMFRQ V+ A+RY PEDSSLVALPLAPDNRRVLCA+P Y ARHG P+ Sbjct: 121 VALQVRIGDRLVDMFRQRVDAAVRYGEPEDSSLVALPLAPDNRRVLCAAPAYFARHGVPK 180 Query: 181 TPADLRQHNCLRYLLSDMLHSQWTFF---KDGTPVQVQVSGDRVCDDGELVHRWAVEGRG 237 TP DLRQHNCL LSD H QWTF DG V+V+G+R+ DDGELV RWAV G G Sbjct: 181 TPDDLRQHNCLMLALSDTTHDQWTFHGASDDGQAHVVRVTGNRIADDGELVRRWAVAGHG 240 Query: 238 IAYKSRLDVLADLRNGKLEALMEDYQGEASPLNLVCTHRMSLSPTVRALRELLGERVARY 297 IAYKSRLDVLADLR G+L+A + D++GEA+PL+L+CTHR++LSPT+ LR+ L ER+A Y Sbjct: 241 IAYKSRLDVLADLRAGRLQAALTDWRGEAAPLHLICTHRLALSPTLMRLRDFLQERIAGY 300 Query: 298 LTD 300 L D Sbjct: 301 LAD 303 >ref|YP_001897664.1| LysR family transcriptional regulator [Ralstonia pickettii 12J] ref|ZP_07674874.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] gb|ACD25232.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J] gb|EFP66799.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] Length = 304 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 201/303 (66%), Positives = 244/303 (80%), Gaps = 3/303 (0%) Query: 1 MIRLEDLAIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP 60 MIR +DL I V A DNGSLSAAAR ++ PA ASAA+KRLE ELG RLLARSTRSL LT Sbjct: 1 MIRFDDLTILVLAVDNGSLSAAARVLNIAPAAASAAVKRLEAELGVRLLARSTRSLALTQ 60 Query: 61 DGERYLQYARNVLAEVNAGRDAVAHGRRVVGGNLSLSVPSDLGRNLMCQWLDEFLAQHPA 120 +GERYLQ+AR LA++ AG+DA+A GR+ +GG++SLS+PSDLGRN++ WLD+FL +HPA Sbjct: 61 EGERYLQHARRALADLQAGQDALALGRQAIGGDVSLSIPSDLGRNVLTGWLDDFLTEHPA 120 Query: 121 VSLQVRISDRVADMFRQPVEVAIRYSPPEDSSLVALPLAPDNRRVLCASPDYLARHGRPR 180 V+LQVRI DR+ DMFRQ V+ A+RY PEDSSLVALPLAPDNRRVLCA+P Y ARHG P+ Sbjct: 121 VALQVRIGDRLVDMFRQRVDAAVRYGEPEDSSLVALPLAPDNRRVLCAAPAYFARHGVPK 180 Query: 181 TPADLRQHNCLRYLLSDMLHSQWTFF---KDGTPVQVQVSGDRVCDDGELVHRWAVEGRG 237 TP DLR+HNCL LSD H QWTF DG V+V+G+R+ DDGELV RWAV G G Sbjct: 181 TPDDLRRHNCLLLALSDTTHDQWTFHGASDDGQAHVVRVTGNRIADDGELVRRWAVAGHG 240 Query: 238 IAYKSRLDVLADLRNGKLEALMEDYQGEASPLNLVCTHRMSLSPTVRALRELLGERVARY 297 IAYKSRLDVLADLR G+L+A + D++GEA+PL+L+CTHR++LSPT+ LR+ L ER+A Y Sbjct: 241 IAYKSRLDVLADLRAGRLQAALTDWRGEAAPLHLICTHRLALSPTLMRLRDFLQERIAGY 300 Query: 298 LTD 300 L D Sbjct: 301 LAD 303 >ref|ZP_02370645.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] Length = 299 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 199/298 (66%), Positives = 239/298 (80%) Query: 1 MIRLEDLAIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP 60 MIR +DLA+FV AADNGSLSAA+R +V PAVASAA+KRLE EL RLLARSTRSLRLTP Sbjct: 1 MIRFDDLAVFVLAADNGSLSAASRLLNVAPAVASAAVKRLESELDVRLLARSTRSLRLTP 60 Query: 61 DGERYLQYARNVLAEVNAGRDAVAHGRRVVGGNLSLSVPSDLGRNLMCQWLDEFLAQHPA 120 DGERYL YARN LAE+ AG+DA+A GR VGG+L+LS+PSD GRN++ WLDEFLA +PA Sbjct: 61 DGERYLAYARNALAELRAGKDALARGRDEVGGDLTLSIPSDFGRNVLSGWLDEFLALYPA 120 Query: 121 VSLQVRISDRVADMFRQPVEVAIRYSPPEDSSLVALPLAPDNRRVLCASPDYLARHGRPR 180 VSL VRI DR+ ++FRQPV+ +RY P+DSSL+A PLAPDNRRVLCASP Y ARHG+P Sbjct: 121 VSLHVRIGDRIVNLFRQPVDAVLRYGVPDDSSLIAAPLAPDNRRVLCASPAYFARHGKPS 180 Query: 181 TPADLRQHNCLRYLLSDMLHSQWTFFKDGTPVQVQVSGDRVCDDGELVHRWAVEGRGIAY 240 TP DL +H+CLR+ LS+ H QWTF V+V+G+RV DDGELV RWAV G GIAY Sbjct: 181 TPDDLSRHHCLRFALSERTHDQWTFHSGDVARTVKVTGNRVADDGELVRRWAVGGYGIAY 240 Query: 241 KSRLDVLADLRNGKLEALMEDYQGEASPLNLVCTHRMSLSPTVRALRELLGERVARYL 298 KSRLDVL DLR G+LE+ ++ + EA+PLNLV THR++LSPT+ ALR+ L R+A YL Sbjct: 241 KSRLDVLDDLRAGRLESALDAWTTEATPLNLVYTHRLALSPTLDALRDFLRARIAAYL 298