BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4889.p (270 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777155.1| transcription regulator protein [Herbaspiril... 454 e-126 ref|ZP_02908773.1| transcriptional regulator, IclR family [Burkh... 318 5e-85 ref|YP_001779576.1| IclR family transcriptional regulator [Burkh... 318 6e-85 ref|YP_001810949.1| IclR family transcriptional regulator [Burkh... 318 7e-85 ref|ZP_04941726.1| Transcriptional regulator [Burkholderia cenoc... 318 7e-85 >ref|YP_003777155.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65247.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 454 bits (1167), Expect = e-126, Method: Composition-based stats. Identities = 237/267 (88%), Positives = 250/267 (93%), Gaps = 4/267 (1%) Query: 8 DAPEDGS----EAGEGGLARRDWIAGLEKGLLILEAFDYDNQRMTSAQVAARTGLSRTAA 63 + P D S E EGGL+RRDWIAGLEKGLLILEAFD+DNQRMTSAQVAARTGLSRTAA Sbjct: 7 NGPADDSREVCEPTEGGLSRRDWIAGLEKGLLILEAFDFDNQRMTSAQVAARTGLSRTAA 66 Query: 64 RRYLLTLEHLGYLHSEGKTFALTPRVLKVGWSYFDSAPLPRILQPHLQQITGQTGEAVYA 123 RRYLLTLEHLGYLHSEGKTFALTPRVLKVGWSYFDSAPLPRILQP LQQITGQTGEAVYA Sbjct: 67 RRYLLTLEHLGYLHSEGKTFALTPRVLKVGWSYFDSAPLPRILQPFLQQITGQTGEAVYA 126 Query: 124 SVLDGWDLVFIARNGTSRVMTTGFVLGARVPAQLASPGIVMLGALPEQQVREWLATCAMT 183 SVLDGWDLVFIARNG +RVMTTGFVLGARVPAQLASPGIVML ALPEQQVR+WLATCAMT Sbjct: 127 SVLDGWDLVFIARNGATRVMTTGFVLGARVPAQLASPGIVMLSALPEQQVRDWLATCAMT 186 Query: 184 PFTPHTITDPDRLYELIAQARQQGYALVEQQLQTGVRGIAVPLKNRHAKVVGALSLSFPL 243 PFTPHTITDPD+LY LIAQARQ GYA+VEQQLQTGVRGIAVPLKNRHAKV+GALSLS P+ Sbjct: 187 PFTPHTITDPDQLYALIAQARQLGYAVVEQQLQTGVRGIAVPLKNRHAKVIGALSLSLPM 246 Query: 244 AVESQEQTLARVLPALQQAANALIHQV 270 A E++EQTLAR+LPALQQAANALI+ V Sbjct: 247 AAEAREQTLARILPALQQAANALINLV 273 >ref|ZP_02908773.1| transcriptional regulator, IclR family [Burkholderia ambifaria MEX-5] gb|EDT40108.1| transcriptional regulator, IclR family [Burkholderia ambifaria MEX-5] Length = 256 Score = 318 bits (816), Expect = 5e-85, Method: Composition-based stats. Identities = 163/249 (65%), Positives = 197/249 (79%), Gaps = 1/249 (0%) Query: 21 LARRDWIAGLEKGLLILEAFDYDNQRMTSAQVAARTGLSRTAARRYLLTLEHLGYLHSEG 80 L RRDWIAGLEKGL ILEAFD + RMT Q AARTGL+RTAARRYLLTLE LGY++++G Sbjct: 6 LDRRDWIAGLEKGLAILEAFDSQHARMTPTQAAARTGLTRTAARRYLLTLESLGYVYTDG 65 Query: 81 KTFALTPRVLKVGWSYFDSAPLPRILQPHLQQITGQTGEAVYASVLDGWDLVFIARNGTS 140 K + LTPRVL+VGWSYFDSA LPR +QP+LQQ++ E+ Y SVLDGW+LVFIARNG S Sbjct: 66 KLYGLTPRVLRVGWSYFDSARLPRTVQPYLQQLSASLNESAYVSVLDGWELVFIARNGVS 125 Query: 141 RVMTTGFVLGARVPAQLASPGIVMLGALPEQQ-VREWLATCAMTPFTPHTITDPDRLYEL 199 RVMTTGFVLGARVPA L SPG+V+L P+++ VR WLA + PFTPHTIT+ RL E Sbjct: 126 RVMTTGFVLGARVPAPLTSPGVVLLAHHPDREAVRAWLADAELAPFTPHTITNKARLLEQ 185 Query: 200 IAQARQQGYALVEQQLQTGVRGIAVPLKNRHAKVVGALSLSFPLAVESQEQTLARVLPAL 259 + AR G+A++EQQLQ GVRGIAVPLKNRH +VV ALS + P+ ES + + RVLP L Sbjct: 186 VDHARDAGFAVIEQQLQVGVRGIAVPLKNRHGEVVAALSTNMPIGTESTDAAVRRVLPHL 245 Query: 260 QQAANALIH 268 Q+AA A+++ Sbjct: 246 QEAALAMLN 254 >ref|YP_001779576.1| IclR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gb|ACA95086.1| transcriptional regulator, IclR family [Burkholderia cenocepacia MC0-3] Length = 257 Score = 318 bits (815), Expect = 6e-85, Method: Composition-based stats. Identities = 163/249 (65%), Positives = 198/249 (79%), Gaps = 1/249 (0%) Query: 21 LARRDWIAGLEKGLLILEAFDYDNQRMTSAQVAARTGLSRTAARRYLLTLEHLGYLHSEG 80 L RRDWIAGLEKGL+ILEAFD + RMT Q AARTGL+RTAARRYLLTLE LGY++++G Sbjct: 7 LDRRDWIAGLEKGLMILEAFDSQHARMTPTQAAARTGLTRTAARRYLLTLESLGYVYTDG 66 Query: 81 KTFALTPRVLKVGWSYFDSAPLPRILQPHLQQITGQTGEAVYASVLDGWDLVFIARNGTS 140 K ++LTPRVL+VGWSYFDSA LPR +QP+LQQ++ E+ Y SVLDGW+LVFIARNG S Sbjct: 67 KLYSLTPRVLRVGWSYFDSARLPRTVQPYLQQLSASLNESAYVSVLDGWELVFIARNGVS 126 Query: 141 RVMTTGFVLGARVPAQLASPGIVMLGALPEQQ-VREWLATCAMTPFTPHTITDPDRLYEL 199 RVMTTGFVLGARVPA L SPG+V+L P+++ VR WL + PFTPHTIT+ RL E Sbjct: 127 RVMTTGFVLGARVPAPLTSPGVVLLAHHPDREAVRAWLDETELPPFTPHTITNKARLLEQ 186 Query: 200 IAQARQQGYALVEQQLQTGVRGIAVPLKNRHAKVVGALSLSFPLAVESQEQTLARVLPAL 259 + QAR GYA +EQQLQ GVRGIAVPLKNRH +VV ALS + P+ E+ + + RVLP L Sbjct: 187 VDQARDAGYAAIEQQLQVGVRGIAVPLKNRHGEVVAALSTNMPIGAETTDAAVRRVLPHL 246 Query: 260 QQAANALIH 268 Q+AA A+++ Sbjct: 247 QEAALAMLN 255 >ref|YP_001810949.1| IclR family transcriptional regulator [Burkholderia ambifaria MC40-6] gb|ACB66733.1| transcriptional regulator, IclR family [Burkholderia ambifaria MC40-6] Length = 256 Score = 318 bits (814), Expect = 7e-85, Method: Composition-based stats. Identities = 162/249 (65%), Positives = 197/249 (79%), Gaps = 1/249 (0%) Query: 21 LARRDWIAGLEKGLLILEAFDYDNQRMTSAQVAARTGLSRTAARRYLLTLEHLGYLHSEG 80 L RRDWIAGLEKGL ILEAFD + RMT Q AARTGL+RTAARRYLLTLE LGY++++G Sbjct: 6 LDRRDWIAGLEKGLAILEAFDSQHARMTPTQAAARTGLTRTAARRYLLTLESLGYVYTDG 65 Query: 81 KTFALTPRVLKVGWSYFDSAPLPRILQPHLQQITGQTGEAVYASVLDGWDLVFIARNGTS 140 K + LTPRVL+VGWSYFDSA LPR +QP+LQQ++ E+ Y SVLDGW+LVFIARNG S Sbjct: 66 KLYGLTPRVLRVGWSYFDSARLPRTVQPYLQQLSASLNESAYVSVLDGWELVFIARNGVS 125 Query: 141 RVMTTGFVLGARVPAQLASPGIVMLGALPEQQ-VREWLATCAMTPFTPHTITDPDRLYEL 199 RVMTTGFVLGARVPA L SPG+V+L P+++ VR WLA + PFTPHTIT+ RL E Sbjct: 126 RVMTTGFVLGARVPAPLTSPGVVLLAHHPDREAVRAWLADAELAPFTPHTITNKARLLEQ 185 Query: 200 IAQARQQGYALVEQQLQTGVRGIAVPLKNRHAKVVGALSLSFPLAVESQEQTLARVLPAL 259 + AR G+A++EQQLQ GVRG+AVPLKNRH +VV ALS + P+ ES + + RVLP L Sbjct: 186 VDHARDAGFAVIEQQLQVGVRGVAVPLKNRHGEVVAALSTNMPIGTESTDAAVRRVLPHL 245 Query: 260 QQAANALIH 268 Q+AA A+++ Sbjct: 246 QEAALAMLN 254 >ref|ZP_04941726.1| Transcriptional regulator [Burkholderia cenocepacia PC184] gb|EAY64897.1| Transcriptional regulator [Burkholderia cenocepacia PC184] Length = 257 Score = 318 bits (814), Expect = 7e-85, Method: Composition-based stats. Identities = 163/249 (65%), Positives = 197/249 (79%), Gaps = 1/249 (0%) Query: 21 LARRDWIAGLEKGLLILEAFDYDNQRMTSAQVAARTGLSRTAARRYLLTLEHLGYLHSEG 80 L RRDWIAGLEKGL+ILEAFD + RMT Q AARTGL+RTAARRYLLTLE LGY++++G Sbjct: 7 LDRRDWIAGLEKGLMILEAFDSQHARMTPTQAAARTGLTRTAARRYLLTLESLGYVYTDG 66 Query: 81 KTFALTPRVLKVGWSYFDSAPLPRILQPHLQQITGQTGEAVYASVLDGWDLVFIARNGTS 140 K + LTPRVL+VGWSYFDSA LPR +QP+LQQ++ E+ Y SVLDGW+LVFIARNG S Sbjct: 67 KLYGLTPRVLRVGWSYFDSARLPRTVQPYLQQLSASLNESAYVSVLDGWELVFIARNGVS 126 Query: 141 RVMTTGFVLGARVPAQLASPGIVMLGALPEQQ-VREWLATCAMTPFTPHTITDPDRLYEL 199 RVMTTGFVLGARVPA L SPG+V+L P+++ VR WL + PFTPHTIT+ RL E Sbjct: 127 RVMTTGFVLGARVPAPLTSPGVVLLAHHPDREAVRAWLDEAELPPFTPHTITNKARLLEQ 186 Query: 200 IAQARQQGYALVEQQLQTGVRGIAVPLKNRHAKVVGALSLSFPLAVESQEQTLARVLPAL 259 + QAR GYA +EQQLQ GVRGIAVPLKNRH +VV ALS + P+ E+ + + RVLP L Sbjct: 187 VDQARDAGYAAIEQQLQVGVRGIAVPLKNRHGEVVAALSTNMPIGAETTDAAVRRVLPHL 246 Query: 260 QQAANALIH 268 Q+AA A+++ Sbjct: 247 QEAALAMLN 255