BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4888.p (260 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777154.1| IclR family transcription regulator protein ... 470 e-130 ref|YP_004752735.1| regulatory protein, IclR [Collimonas fungivo... 327 2e-87 ref|YP_001792703.1| IclR family transcriptional regulator [Lepto... 230 2e-58 ref|YP_981883.1| regulatory proteins, IclR [Polaromonas naphthal... 226 2e-57 ref|YP_002945214.1| IclR family transcriptional regulator [Vario... 213 3e-53 >ref|YP_003777154.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65246.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 246/260 (94%), Positives = 254/260 (97%) Query: 1 MIDQNSVELDIQKRDLIEGLMKGFDVITAFTSESPQLTASEVAERVGLTRSAARRYLLTL 60 MIDQ+ V+LDIQKRDLIEGLMKGFDVITAF S+SPQL+ASEVAERVGLTRSAARRYLLTL Sbjct: 1 MIDQSPVDLDIQKRDLIEGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTL 60 Query: 61 VHTGMAASDGKKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDE 120 VHTGMAASDGKKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDE Sbjct: 61 VHTGMAASDGKKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDE 120 Query: 121 IVYVTRVTAAQLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEITAYLDRVTLIPHTHMAM 180 IVYVTRVTAAQLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEI AYL+RV LIPHTHMAM Sbjct: 121 IVYVTRVTAAQLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAM 180 Query: 181 TDKAALFAEIVTMRKQGYGITENQFEMGMRGIAIPVKNRNGRVIGALSVTSNIAACSRED 240 TDKAALF EI+TMR+QGYGITENQFEMGMRGIAI VKNRNGRVIGALSVTSNIAACSRE+ Sbjct: 181 TDKAALFQEILTMRRQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACSREE 240 Query: 241 AIARGVPALQTTANTLMMWV 260 AIARGVPALQTTANTLMMWV Sbjct: 241 AIARGVPALQTTANTLMMWV 260 >ref|YP_004752735.1| regulatory protein, IclR [Collimonas fungivorans Ter331] gb|AEK61912.1| regulatory protein, IclR [Collimonas fungivorans Ter331] Length = 301 Score = 327 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 161/254 (63%), Positives = 217/254 (85%) Query: 7 VELDIQKRDLIEGLMKGFDVITAFTSESPQLTASEVAERVGLTRSAARRYLLTLVHTGMA 66 VE+++ KRDLI+GL+KG DVITAF ++ +LTASE+AE+V L+RSAARRYLLTLVH G+A Sbjct: 48 VEMEVAKRDLIDGLIKGIDVITAFNDDTVRLTASELAEKVALSRSAARRYLLTLVHIGLA 107 Query: 67 ASDGKKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTR 126 A+DG+ FWL P++LNLG+SYL+SAR+PRA+VPFLQRLT QLQESTN+S+L+GD++VYV+R Sbjct: 108 ATDGRSFWLTPKVLNLGRSYLDSARLPRAIVPFLQRLTLQLQESTNYSVLEGDDVVYVSR 167 Query: 127 VTAAQLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEITAYLDRVTLIPHTHMAMTDKAAL 186 V A +L+ GFEPGTRLPAYT+TAGRVLL DA++ AYL+R+ LI +TH+ + DK L Sbjct: 168 VNAPRLLTTGFEPGTRLPAYTSTAGRVLLSAMPDADLRAYLERIELIAYTHLTVVDKEQL 227 Query: 187 FAEIVTMRKQGYGITENQFEMGMRGIAIPVKNRNGRVIGALSVTSNIAACSREDAIARGV 246 F E++ +R+ G+G+TENQ+E+G+RGI++P+K+R G +IGALSV+ I++ S+ +A AR + Sbjct: 228 FQELIAIREDGFGVTENQYEIGLRGISVPIKSRRGALIGALSVSMMISSSSKAEATARCL 287 Query: 247 PALQTTANTLMMWV 260 PALQ TANTLMMWV Sbjct: 288 PALQATANTLMMWV 301 >ref|YP_001792703.1| IclR family transcriptional regulator [Leptothrix cholodnii SP-6] gb|ACB35938.1| transcriptional regulator, IclR family [Leptothrix cholodnii SP-6] Length = 254 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 117/246 (47%), Positives = 161/246 (65%) Query: 11 IQKRDLIEGLMKGFDVITAFTSESPQLTASEVAERVGLTRSAARRYLLTLVHTGMAASDG 70 I ++D+IEGL KG VI +F + P+L+ SE AER GLTR+AARRYLL+LVH G A SDG Sbjct: 5 IDRKDIIEGLGKGLRVIESFDDDHPRLSPSEAAERAGLTRTAARRYLLSLVHYGYADSDG 64 Query: 71 KKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTRVTAA 130 K FWL+P++L LGQSYL +AR+PR V PF+QRL+Q E+ NFS+LDG EIVY+ R + Sbjct: 65 KHFWLLPKVLRLGQSYLGAARLPRLVQPFIQRLSQSCGETVNFSVLDGHEIVYLARSVSP 124 Query: 131 QLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEITAYLDRVTLIPHTHMAMTDKAALFAEI 190 ++++ GF G R+PA+ T V+L D + ++ +TD A A++ Sbjct: 125 RVISIGFHAGARVPAHVVTPSTVILATYPDEALDRWIADHHFAAFAPNTVTDAAVFRADV 184 Query: 191 VTMRKQGYGITENQFEMGMRGIAIPVKNRNGRVIGALSVTSNIAACSREDAIARGVPALQ 250 + R+ GY +TE Q E+G+RG+A+ VK+R G GA+ T + SRED IAR +P LQ Sbjct: 185 IGARRLGYWVTEQQLEIGLRGMALAVKDRKGVCRGAIGATMPMQNQSREDTIARLLPLLQ 244 Query: 251 TTANTL 256 TA L Sbjct: 245 ETAQAL 250 >ref|YP_981883.1| regulatory proteins, IclR [Polaromonas naphthalenivorans CJ2] gb|ABM36962.1| transcriptional regulator, IclR family [Polaromonas naphthalenivorans CJ2] Length = 270 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 121/246 (49%), Positives = 163/246 (66%) Query: 11 IQKRDLIEGLMKGFDVITAFTSESPQLTASEVAERVGLTRSAARRYLLTLVHTGMAASDG 70 + KRD I GL KG +I F +P+LTAS+ A R GL+R+AARRYLLTL H G A+DG Sbjct: 21 LDKRDWIAGLEKGLSIIECFDDANPRLTASQAAARCGLSRTAARRYLLTLEHLGYVATDG 80 Query: 71 KKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTRVTAA 130 K FWL PR+L LGQSYLESAR+PR V PFLQR+T QES S++DGDEIVY+ R A Sbjct: 81 KLFWLTPRVLRLGQSYLESARLPRMVQPFLQRVTAGTQESAYVSVMDGDEIVYIARNGAN 140 Query: 131 QLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEITAYLDRVTLIPHTHMAMTDKAALFAEI 190 + +N G+ G+R+ A T AG ++L +RE + ++L+ L +T + K L E+ Sbjct: 141 RAMNTGYVLGSRVQAQVTAAGLMMLALREPGWLESWLNTHELKAYTSYTIASKDRLRIEL 200 Query: 191 VTMRKQGYGITENQFEMGMRGIAIPVKNRNGRVIGALSVTSNIAACSREDAIARGVPALQ 250 +R QG+ I+E Q E+ RGIA+P+++R+G V+GALSVT I S EDA+AR + L Sbjct: 201 ARVRAQGWAISEQQLELNHRGIAVPLRDRHGEVMGALSVTMPIGHESSEDAVARVLSVLS 260 Query: 251 TTANTL 256 TA + Sbjct: 261 ETAQAM 266 >ref|YP_002945214.1| IclR family transcriptional regulator [Variovorax paradoxus S110] gb|ACS19948.1| transcriptional regulator, IclR family [Variovorax paradoxus S110] Length = 264 Score = 213 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 111/246 (45%), Positives = 159/246 (64%) Query: 11 IQKRDLIEGLMKGFDVITAFTSESPQLTASEVAERVGLTRSAARRYLLTLVHTGMAASDG 70 + KRD I GL +G +I AF P+LTAS+ ER G+TR+AARRYLLTL H G ASDG Sbjct: 15 LDKRDWIAGLERGVSIIEAFDDAHPRLTASQAGERTGMTRTAARRYLLTLQHMGYVASDG 74 Query: 71 KKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTRVTAA 130 K FWL PR+L LGQSYL+SAR+PR V PFLQR+ E S++DGDE+VY+ R Sbjct: 75 KLFWLTPRVLRLGQSYLDSARLPRIVQPFLQRVAAGTSEIAYLSVMDGDEVVYIARNGPN 134 Query: 131 QLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEITAYLDRVTLIPHTHMAMTDKAALFAEI 190 + ++ G+ G R+PA T AG ++L +R DAE+ +L L T + + E+ Sbjct: 135 RSMSTGYVLGARVPAQVTAAGMLMLALRSDAELAGWLATRQLQVFTSHTIASMERMKLEL 194 Query: 191 VTMRKQGYGITENQFEMGMRGIAIPVKNRNGRVIGALSVTSNIAACSREDAIARGVPALQ 250 +R QG+ ++E Q ++ RGIA+P+++R+G ++GAL++T + S EDA+AR +P L+ Sbjct: 195 ARIRAQGWALSEQQLDLNSRGIAVPLRDRHGTLVGALNITMPMGHESSEDAVARVLPVLR 254 Query: 251 TTANTL 256 TA + Sbjct: 255 ETAQAM 260