BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4887.p (281 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777152.1| shikimate 5-dehydrogenase [Herbaspirillum se... 502 e-140 ref|YP_004752737.1| shikimate 5-dehydrogenase I alpha [Collimona... 351 9e-95 ref|ZP_03528419.1| Shikimate dehydrogenase substrate binding dom... 230 2e-58 emb|CBA27509.1| hypothetical protein Csp_A02630 [Curvibacter put... 229 4e-58 ref|YP_002985056.1| Shikimate dehydrogenase substrate binding do... 224 2e-56 >ref|YP_003777152.1| shikimate 5-dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ65244.1| shikimate 5-dehydrogenase protein [Herbaspirillum seropedicae SmR1] Length = 281 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 261/281 (92%), Positives = 271/281 (96%) Query: 1 MKEITGTTRIFPVIGWPVEQVKAPTLFNAYFKRHGLDARVIPFKIEPERYCEAVRMFMKT 60 MK ITGTTRIFPVIGWPVEQVKAPTLFNAYF+ HG+DARVIPFKIEPERYCEAVRMFMKT Sbjct: 1 MKAITGTTRIFPVIGWPVEQVKAPTLFNAYFEHHGIDARVIPFKIEPERYCEAVRMFMKT 60 Query: 61 ENVGGIFVSIPHKPMTLEAVEQATLRARVAGACNAVYRDAEGVVWGDLIDGEGFIRALAR 120 ENVGGIFVSIPHKPMTLEAVEQ+TLRARVAGACNAVYRDA+GV+WGDLIDGEGFIRALAR Sbjct: 61 ENVGGIFVSIPHKPMTLEAVEQSTLRARVAGACNAVYRDADGVIWGDLIDGEGFIRALAR 120 Query: 121 TAADRPLVWNKTRALVVGTGGVGCAIVASLAAQGIAEISVFDTNRAGAEALLARVEAAYP 180 TAADRPLVWN+TRALVVGTGGVGCAIVASLAAQG+AEISVFDTNRAGAEALLAR AA+P Sbjct: 121 TAADRPLVWNQTRALVVGTGGVGCAIVASLAAQGVAEISVFDTNRAGAEALLARAAAAFP 180 Query: 181 ATRVRFAQPDASGVDLLVNCTPLGMHVGDPMPFALEGVSTEAIVADCGMKIEMSQLLVQA 240 ATRV FAQPDASG DLLVNCTPLGMHVGDPMPFALEGV +AIVADCGMKIEMSQLLVQA Sbjct: 181 ATRVGFAQPDASGFDLLVNCTPLGMHVGDPMPFALEGVRRDAIVADCGMKIEMSQLLVQA 240 Query: 241 QAKGCRIQKGKEMLIEQAPLYLELFGWPGVAADDFRHLEAL 281 QA GCRIQKGKEMLIEQAPLYLELFGWPGV+ADDFR LEAL Sbjct: 241 QALGCRIQKGKEMLIEQAPLYLELFGWPGVSADDFRALEAL 281 >ref|YP_004752737.1| shikimate 5-dehydrogenase I alpha [Collimonas fungivorans Ter331] gb|AEK61914.1| Shikimate 5-dehydrogenase I alpha [Collimonas fungivorans Ter331] Length = 289 Score = 351 bits (900), Expect = 9e-95, Method: Composition-based stats. Identities = 180/281 (64%), Positives = 221/281 (78%) Query: 1 MKEITGTTRIFPVIGWPVEQVKAPTLFNAYFKRHGLDARVIPFKIEPERYCEAVRMFMKT 60 M EI+G+TRIFPVIGWPVEQVKAP LFNAYFKRHG+DARVIP KI P Y AVRM M Sbjct: 9 MLEISGSTRIFPVIGWPVEQVKAPALFNAYFKRHGIDARVIPLKIAPSGYLSAVRMLMAA 68 Query: 61 ENVGGIFVSIPHKPMTLEAVEQATLRARVAGACNAVYRDAEGVVWGDLIDGEGFIRALAR 120 ENVGGI VSIPHKP++++AV++ T RA +AGACNA+Y+ A+G + GDLIDGEGFIRA R Sbjct: 69 ENVGGILVSIPHKPLSVDAVDRPTPRAVLAGACNAIYKSADGQLVGDLIDGEGFIRAFDR 128 Query: 121 TAADRPLVWNKTRALVVGTGGVGCAIVASLAAQGIAEISVFDTNRAGAEALLARVEAAYP 180 T D W + +ALVVG+GGVGCA+ A+LAA+GI ++++DT R AEAL R++ + Sbjct: 129 TCGDTRFDWQRAKALVVGSGGVGCAVAAALAARGIGHVAIYDTRREQAEALRQRLQDMFT 188 Query: 181 ATRVRFAQPDASGVDLLVNCTPLGMHVGDPMPFALEGVSTEAIVADCGMKIEMSQLLVQA 240 T V P A+G DL+VN TPLGM DP+P L+G++ IVADCGMKIEM++LL+QA Sbjct: 189 ETEVVIGAPSAAGYDLVVNSTPLGMGPDDPLPLDLDGIAPSCIVADCGMKIEMTRLLLQA 248 Query: 241 QAKGCRIQKGKEMLIEQAPLYLELFGWPGVAADDFRHLEAL 281 Q GCRIQKG+EM+IEQAPLYLELFGWPGV++D FR LEA+ Sbjct: 249 QRHGCRIQKGREMMIEQAPLYLELFGWPGVSSDAFRVLEAI 289 >ref|ZP_03528419.1| Shikimate dehydrogenase substrate binding domain protein [Rhizobium etli CIAT 894] Length = 276 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 112/278 (40%), Positives = 167/278 (60%), Gaps = 4/278 (1%) Query: 4 ITGTTRIFPVIGWPVEQVKAPTLFNAYFKRHGLDARVIPFKIEPERYCEAVRMFMKTENV 63 ITGTT++ +G+P E KAP ++N YF+++G+DA V+P PE Y +++ + N+ Sbjct: 2 ITGTTKLIAHLGYPTESFKAPLIYNPYFEKNGIDAVVVPMGCRPEDYPVFLKLVFRLSNI 61 Query: 64 GGIFVSIPHKPMTLEAVEQATLRARVAGACNAVYRDAEGVVWGDLIDGEGFIRALARTAA 123 G +++PHK T+ +++ + A+VAG+CNAV D+ G + GD+ DGEGF+R + R Sbjct: 62 HGALITMPHKIATMALLDETSTNAKVAGSCNAVRLDSNGRLIGDMFDGEGFVRGVLRKGK 121 Query: 124 DRPLVWNKTRALVVGTGGVGCAIVASLAAQGIAEISVFDTNRAGAEALLARVEAAYPATR 183 ALV+G GGVG AI ASLA G+A +++FD N A AL R++ YP R Sbjct: 122 KV----EGANALVIGAGGVGSAIAASLAKAGVAHLALFDANETTATALFDRLKTHYPHLR 177 Query: 184 VRFAQPDASGVDLLVNCTPLGMHVGDPMPFALEGVSTEAIVADCGMKIEMSQLLVQAQAK 243 V D +G D++VN TPLGM GDP+P ++ +S V + + E++ L A+A+ Sbjct: 178 VTIGSLDPAGFDIVVNATPLGMRRGDPLPIDVDRISPSTFVGEVVLSKEITPFLEAARAR 237 Query: 244 GCRIQKGKEMLIEQAPLYLELFGWPGVAADDFRHLEAL 281 GC Q G +ML EQ P YLE F +P AD+ R + L Sbjct: 238 GCTFQVGTDMLFEQIPAYLEFFDFPTTTADNLRAIAKL 275 >emb|CBA27509.1| hypothetical protein Csp_A02630 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 279 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 116/278 (41%), Positives = 169/278 (60%), Gaps = 4/278 (1%) Query: 4 ITGTTRIFPVIGWPVEQVKAPTLFNAYFKRHGLDARVIPFKIEPERYCEAVRMFMKTENV 63 I G T + +G+P KAP ++N +F++ G++A V+P +PE + +R + N+ Sbjct: 3 INGNTELIVHLGYPTHAFKAPMIYNPWFEKAGVNAVVVPMGSKPEDFPGFLRSVFQLSNI 62 Query: 64 GGIFVSIPHKPMTLEAVEQATLRARVAGACNAVYRDAEGVVWGDLIDGEGFIRALARTAA 123 G +++PHK +T V++ + A++AGACNAV +G + GD+ DG GF+R + R Sbjct: 63 RGALITMPHKVVTTTLVDELSPTAQIAGACNAVRLGPQGQLQGDMFDGAGFVRGVLR--- 119 Query: 124 DRPLVWNKTRALVVGTGGVGCAIVASLAAQGIAEISVFDTNRAGAEALLARVEAAYPATR 183 + LV RALVVG+GGVGCAI ASLAA+G++ +++FD N AE L AR+ YP Sbjct: 120 -KGLVLKGARALVVGSGGVGCAIAASLAAEGLSALALFDVNAEAAEGLAARLRQHYPQID 178 Query: 184 VRFAQPDASGVDLLVNCTPLGMHVGDPMPFALEGVSTEAIVADCGMKIEMSQLLVQAQAK 243 V D +G DL+VN TPLGM+ GDPMP + +S V + MK E + L +A + Sbjct: 179 VSTGSTDPAGFDLVVNATPLGMNEGDPMPLDVSRLSASTFVGEVVMKSETTAFLAEAILR 238 Query: 244 GCRIQKGKEMLIEQAPLYLELFGWPGVAADDFRHLEAL 281 GC++Q G +ML EQ P YLE FG P +AD+ R L L Sbjct: 239 GCKVQVGSDMLFEQIPAYLEFFGLPSTSADELRSLATL 276 >ref|YP_002985056.1| Shikimate dehydrogenase substrate binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS60094.1| Shikimate dehydrogenase substrate binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 276 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 110/278 (39%), Positives = 164/278 (58%), Gaps = 4/278 (1%) Query: 4 ITGTTRIFPVIGWPVEQVKAPTLFNAYFKRHGLDARVIPFKIEPERYCEAVRMFMKTENV 63 ITGTT++ +G+P E KAP ++N YF+++G+DA V+P P Y +++ + N+ Sbjct: 2 ITGTTKLIAHLGYPTESFKAPLIYNPYFEKNGIDAVVVPMGCRPADYPVFLKLLFRLSNI 61 Query: 64 GGIFVSIPHKPMTLEAVEQATLRARVAGACNAVYRDAEGVVWGDLIDGEGFIRALARTAA 123 G +++PHK T+ +++ + A+VAG+CNAV ++G + GD+ DGEGF+R + R Sbjct: 62 HGALITMPHKISTMALLDETSTNAKVAGSCNAVRLGSDGRLIGDMFDGEGFVRGVLRKGK 121 Query: 124 DRPLVWNKTRALVVGTGGVGCAIVASLAAQGIAEISVFDTNRAGAEALLARVEAAYPATR 183 RAL+ G GGVG AI ASLA G+ +++FD N A A ALL R++ YP Sbjct: 122 QV----EGARALIAGAGGVGSAIAASLAQAGVEHLAIFDANEATATALLDRLKKYYPQLE 177 Query: 184 VRFAQPDASGVDLLVNCTPLGMHVGDPMPFALEGVSTEAIVADCGMKIEMSQLLVQAQAK 243 V D G D++VN TPLGM GDP+P ++ +S V + M E++ L +A+ Sbjct: 178 VTVGSADPEGFDIVVNATPLGMRRGDPLPIDIDRISPSTFVGEVVMTKEITPFLEAVRAR 237 Query: 244 GCRIQKGKEMLIEQAPLYLELFGWPGVAADDFRHLEAL 281 GC Q G +ML EQ P YLE F +P AD+ R + L Sbjct: 238 GCAFQVGTDMLFEQIPAYLEFFEFPTTTADNLRAIAKL 275