BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4886.p (283 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777151.1| 4-hydroxyphenylpyruvate dioxygenase [Herbasp... 537 e-151 ref|YP_004752738.1| 4-hydroxyphenylpyruvate dioxygenase [Collimo... 437 e-121 ref|YP_548685.1| xylose isomerase-like protein TIM barrel [Polar... 336 3e-90 ref|YP_001792711.1| xylose isomerase domain-containing protein [... 335 6e-90 ref|ZP_08407267.1| xylose isomerase domain-containing protein [H... 332 3e-89 >ref|YP_003777151.1| 4-hydroxyphenylpyruvate dioxygenase [Herbaspirillum seropedicae SmR1] gb|ADJ65243.1| 4-hydroxyphenylpyruvate dioxygenase protein [Herbaspirillum seropedicae SmR1] Length = 290 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 268/283 (94%), Positives = 275/283 (97%) Query: 1 MDTITLPGGLESKLAASKAAGFSQLMLWSKDLVGYPGGLEAAVKLVRESGVRVTGIQVMR 60 MDTITLPGGLESKL AS+AAGFSQLMLWSKDLVGYPGGLEAAVKLVRESGVRVTGIQVMR Sbjct: 8 MDTITLPGGLESKLQASRAAGFSQLMLWSKDLVGYPGGLEAAVKLVRESGVRVTGIQVMR 67 Query: 61 DYEGLQGSLHDYKVDVARNLLQICKAVGAPLLMVCSSTSQHASGDTRHIARDLAKLANLA 120 DYEGLQG+LHDYK+DVA+NLLQICKAVGAPLL+VCSSTSQHASGDT HIARDL KLANLA Sbjct: 68 DYEGLQGTLHDYKIDVAKNLLQICKAVGAPLLLVCSSTSQHASGDTAHIARDLRKLANLA 127 Query: 121 VPLGIRVGFEALSWGRHINQYMQAWEVVEMADHANLGVVIDSFHILANRGALEDLDAIPG 180 VPLGIRVGFEALSWGRHINQYMQ+WEVVEMADHANLGVVIDSFHILANRG LEDLDAIPG Sbjct: 128 VPLGIRVGFEALSWGRHINQYMQSWEVVEMADHANLGVVIDSFHILANRGTLEDLDAIPG 187 Query: 181 RRIVMVQLSDFMWREIRTPEERLETARHLRVFPGEGEHSLELSDMVRRLHRGGYRGDYSF 240 RRIVMVQLSDFMWREIR+PEERLETARHLRVFPGEGEHS ELSDMVRRLHRGGYRGDYSF Sbjct: 188 RRIVMVQLSDFMWREIRSPEERLETARHLRVFPGEGEHSAELSDMVRRLHRGGYRGDYSF 247 Query: 241 EVFNDDYLQMSPAVVAERARRSAKWVTDQVLRRGLRVREAVAA 283 EVFNDDYLQMSPAVVAERARRSAKWVTDQVLRRGLRVRE A Sbjct: 248 EVFNDDYLQMSPAVVAERARRSAKWVTDQVLRRGLRVREPAFA 290 >ref|YP_004752738.1| 4-hydroxyphenylpyruvate dioxygenase [Collimonas fungivorans Ter331] gb|AEK61915.1| 4-hydroxyphenylpyruvate dioxygenase [Collimonas fungivorans Ter331] Length = 295 Score = 437 bits (1125), Expect = e-121, Method: Composition-based stats. Identities = 212/283 (74%), Positives = 250/283 (88%) Query: 1 MDTITLPGGLESKLAASKAAGFSQLMLWSKDLVGYPGGLEAAVKLVRESGVRVTGIQVMR 60 MD+ITL G LESKL+ASKAAGFSQ+MLW+KDL G+PGGLE AV+LV+ SGVRVTGIQVMR Sbjct: 8 MDSITLAGPLESKLSASKAAGFSQIMLWAKDLAGHPGGLEQAVRLVKASGVRVTGIQVMR 67 Query: 61 DYEGLQGSLHDYKVDVARNLLQICKAVGAPLLMVCSSTSQHASGDTRHIARDLAKLANLA 120 D+EGL G+LH+YK+D+A+N+LQ+C+AVGAPLLMVCSSTS HASG+ IAR LAKLA LA Sbjct: 68 DFEGLSGALHEYKLDIAKNMLQVCQAVGAPLLMVCSSTSSHASGELPLIARHLAKLATLA 127 Query: 121 VPLGIRVGFEALSWGRHINQYMQAWEVVEMADHANLGVVIDSFHILANRGALEDLDAIPG 180 VPLG+RVG+EALSWGRH+NQY Q+WE VE+ADHANLGVV+DSFH+LAN+ L+ L IP Sbjct: 128 VPLGVRVGYEALSWGRHVNQYAQSWEAVELADHANLGVVLDSFHMLANQADLDGLQDIPS 187 Query: 181 RRIVMVQLSDFMWREIRTPEERLETARHLRVFPGEGEHSLELSDMVRRLHRGGYRGDYSF 240 +I +VQLSDFMWR+IR+ EERLETARHLRVFPGEG HS ELS+++RRL RGGYRGDYSF Sbjct: 188 EKIALVQLSDFMWRDIRSAEERLETARHLRVFPGEGAHSKELSELLRRLDRGGYRGDYSF 247 Query: 241 EVFNDDYLQMSPAVVAERARRSAKWVTDQVLRRGLRVREAVAA 283 EVFNDDYLQ+SP +VA RA R+AKWVTDQVLRR L+VR+ A Sbjct: 248 EVFNDDYLQLSPDIVARRAHRAAKWVTDQVLRRSLQVRQPSAG 290 >ref|YP_548685.1| xylose isomerase-like protein TIM barrel [Polaromonas sp. JS666] gb|ABE43787.1| Xylose isomerase-like TIM barrel [Polaromonas sp. JS666] Length = 297 Score = 336 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 158/275 (57%), Positives = 213/275 (77%) Query: 1 MDTITLPGGLESKLAASKAAGFSQLMLWSKDLVGYPGGLEAAVKLVRESGVRVTGIQVMR 60 MDTI+L G LE+KL A + AGF+Q+ML ++DLVG+P GL+AA+ VR SG+RVTG QV+R Sbjct: 13 MDTISLAGPLEAKLKAVREAGFTQIMLAARDLVGHPDGLDAAIAAVRTSGLRVTGFQVLR 72 Query: 61 DYEGLQGSLHDYKVDVARNLLQICKAVGAPLLMVCSSTSQHASGDTRHIARDLAKLANLA 120 D+EGL G LHDYKVD+A+++L++C A+ LL++CSSTS HA+ DTR + +DL KLA LA Sbjct: 73 DFEGLSGHLHDYKVDIAKSMLEMCHALDCRLLLICSSTSVHATDDTRALVKDLRKLAMLA 132 Query: 121 VPLGIRVGFEALSWGRHINQYMQAWEVVEMADHANLGVVIDSFHILANRGALEDLDAIPG 180 +P+ IR+ +EALSWGR +N++ QAW+++ AD NLG+ DSFH+ A + +L++LD + Sbjct: 133 IPMNIRIAYEALSWGRVVNEFPQAWDIICEADMPNLGLGFDSFHMFATKTSLDELDMLDP 192 Query: 181 RRIVMVQLSDFMWREIRTPEERLETARHLRVFPGEGEHSLELSDMVRRLHRGGYRGDYSF 240 +I +VQL+DFMW EI++ EER+ TARH RVFPGEG HS L+ +V +LH GYRGDYSF Sbjct: 193 DKIFLVQLADFMWTEIKSVEERIATARHFRVFPGEGVHSEALATLVTKLHGLGYRGDYSF 252 Query: 241 EVFNDDYLQMSPAVVAERARRSAKWVTDQVLRRGL 275 EVFNDDY QM VA+RA RSA W+ + VLRR + Sbjct: 253 EVFNDDYQQMPLPTVAQRAWRSALWLGEDVLRRSV 287 >ref|YP_001792711.1| xylose isomerase domain-containing protein [Leptothrix cholodnii SP-6] gb|ACB35946.1| Xylose isomerase domain protein TIM barrel [Leptothrix cholodnii SP-6] Length = 305 Score = 335 bits (858), Expect = 6e-90, Method: Composition-based stats. Identities = 164/275 (59%), Positives = 216/275 (78%) Query: 1 MDTITLPGGLESKLAASKAAGFSQLMLWSKDLVGYPGGLEAAVKLVRESGVRVTGIQVMR 60 MDTI+L G LE++LAA KAAGFSQ+ML ++D+VG+P G++AAV VR SG+RVTG QV+R Sbjct: 19 MDTISLAGPLEARLAAVKAAGFSQIMLAARDIVGHPQGIDAAVAAVRASGLRVTGFQVLR 78 Query: 61 DYEGLQGSLHDYKVDVARNLLQICKAVGAPLLMVCSSTSQHASGDTRHIARDLAKLANLA 120 D+EGL G LH YKVD+A+ ++ + +A+GA +L+ CSSTS+HASG+ IARDL KLA LA Sbjct: 79 DFEGLSGHLHGYKVDIAKQMILMARALGAEVLLACSSTSEHASGEVDTIARDLRKLAMLA 138 Query: 121 VPLGIRVGFEALSWGRHINQYMQAWEVVEMADHANLGVVIDSFHILANRGALEDLDAIPG 180 +P GIR+ FEALSWGRH+N+Y AW+VVE AD NLG+ IDS+H+ A L+ L+ + Sbjct: 139 LPHGIRIAFEALSWGRHLNEYTHAWQVVERADCPNLGLAIDSYHVFATGTPLDALERVDP 198 Query: 181 RRIVMVQLSDFMWREIRTPEERLETARHLRVFPGEGEHSLELSDMVRRLHRGGYRGDYSF 240 +I +VQL+DFMW+E+RTP+ER++TARH RVFPGEG HS L+ +V +L + GYRGDYSF Sbjct: 199 AKIYLVQLADFMWQELRTPQERMDTARHFRVFPGEGVHSQALTALVLKLDQLGYRGDYSF 258 Query: 241 EVFNDDYLQMSPAVVAERARRSAKWVTDQVLRRGL 275 EVFNDDY Q+ VA+RAR SA W+ + VLRR + Sbjct: 259 EVFNDDYQQLPLPYVAQRARDSALWLAEGVLRRSV 293 >ref|ZP_08407267.1| xylose isomerase domain-containing protein [Hylemonella gracilis ATCC 19624] gb|EGI75598.1| xylose isomerase domain-containing protein [Hylemonella gracilis ATCC 19624] Length = 304 Score = 332 bits (852), Expect = 3e-89, Method: Composition-based stats. Identities = 162/274 (59%), Positives = 209/274 (76%) Query: 2 DTITLPGGLESKLAASKAAGFSQLMLWSKDLVGYPGGLEAAVKLVRESGVRVTGIQVMRD 61 DTITL G L++KL A++ AGFSQ+ML + DLVG+P G AAV VRESG+R TG QV+RD Sbjct: 17 DTITLAGPLKAKLQATREAGFSQIMLKANDLVGHPEGWRAAVSEVRESGLRGTGFQVLRD 76 Query: 62 YEGLQGSLHDYKVDVARNLLQICKAVGAPLLMVCSSTSQHASGDTRHIARDLAKLANLAV 121 +EGL G LH+YKVD+A+ +L++C A+G +L+ CSSTS HAS D HIARDL KLA LAV Sbjct: 77 FEGLSGHLHEYKVDIAKTMLEMCAALGCDVLLACSSTSTHASQDLDHIARDLHKLAMLAV 136 Query: 122 PLGIRVGFEALSWGRHINQYMQAWEVVEMADHANLGVVIDSFHILANRGALEDLDAIPGR 181 P GIR+ +E LSWGR +N+Y AW+VV AD NLGV +DS+HILA + L+ + I Sbjct: 137 PHGIRIAYEGLSWGRTVNEYTTAWDVVCRADAPNLGVCLDSYHILAAKTPLDAIQDIDPD 196 Query: 182 RIVMVQLSDFMWREIRTPEERLETARHLRVFPGEGEHSLELSDMVRRLHRGGYRGDYSFE 241 +I +VQLSDFMW+E RT EER+ TAR RVFPGEG HS ++ ++VR++ + GY+GDYSFE Sbjct: 197 KIFLVQLSDFMWQETRTFEERMATARTYRVFPGEGVHSEQIIELVRKIDQLGYKGDYSFE 256 Query: 242 VFNDDYLQMSPAVVAERARRSAKWVTDQVLRRGL 275 VFNDDY+QM +VAERAR+SA W+ D +LR + Sbjct: 257 VFNDDYVQMPLPMVAERARKSALWLADDILRSSM 290