BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4884.p (386 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777149.1| porin signal peptide protein [Herbaspirillum... 619 e-175 ref|YP_004752740.1| outer membrane porin, ompC family [Collimona... 509 e-142 ref|YP_556160.1| OmpC family outer membrane porin [Burkholderia ... 385 e-105 ref|YP_001565451.1| porin [Delftia acidovorans SPH-1] >gi|160365... 356 3e-96 ref|YP_004487744.1| porin [Delftia sp. Cs1-4] >gi|333744212|gb|A... 356 4e-96 >ref|YP_003777149.1| porin signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ65241.1| porin signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 380 Score = 619 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 345/381 (90%), Positives = 361/381 (94%), Gaps = 2/381 (0%) Query: 6 TRPTSALRTPVAMGLLLAASTTALAQSTSNVTLYGTVDQYLGYMHSSSGKSLWALNDGAI 65 T+P+ +RTPVAMGLLLAAS +ALAQS SNVTLYGT+DQYLGYM SSSGKSLWALNDGAI Sbjct: 2 TKPS--IRTPVAMGLLLAASGSALAQSASNVTLYGTLDQYLGYMRSSSGKSLWALNDGAI 59 Query: 66 LRSRIGLKGYEDLGGGYAATFTLENGFAGDTGGLADSTRLFDRQSWVGIKTPGAGEFRVG 125 LRSRIGLKGYEDLGGGYA TFTLENGF+ DTG AD TRLFDRQSWVGIKTP AGEFR+G Sbjct: 60 LRSRIGLKGYEDLGGGYATTFTLENGFSADTGAQADGTRLFDRQSWVGIKTPAAGEFRIG 119 Query: 126 RQNSVPFFIGGAIDYTERTTYGSIINTFGVPSRFDNDLSWKSPRWAGFQFDIHYAMPETA 185 RQNSVPFFIGGAIDYTERTTYGSIINTFGVPSRFDNDLSWKSPRWAG Q D+HYAMPETA Sbjct: 120 RQNSVPFFIGGAIDYTERTTYGSIINTFGVPSRFDNDLSWKSPRWAGLQIDLHYAMPETA 179 Query: 186 GEGLGRRGVYQFGLDYTNGPYRAGYAGLVAKPNAGGLYSNTVQYHNVYADYDYGPGKIYL 245 GEGLGRRGVYQ G+DY NGPYRAGYAGL+AKPNAGGLY N VQYHNVY +YDYGPGK+YL Sbjct: 180 GEGLGRRGVYQLGIDYINGPYRAGYAGLMAKPNAGGLYDNAVQYHNVYLNYDYGPGKVYL 239 Query: 246 AYVRSNNTTANANGNNAATILNNVSNPNNFFAGNDPNIQRFYNVYQVSADYRLTPQLRIG 305 AYVRSNNTTAN NGNNAATILNNVSNPNNFFAGND N+QRFYNVYQ+SADYRLTPQLRIG Sbjct: 240 AYVRSNNTTANTNGNNAATILNNVSNPNNFFAGNDANVQRFYNVYQISADYRLTPQLRIG 299 Query: 306 ALYGVMVDTSHKDGGAQGGNVGAYYDLSKRTTLYGFANYMKNQANAGWRFSGSAGPGSNL 365 ALYGVMVDTSHK+GGAQGGNVGAYYDLSKRTTLYGFANYMKNQANAGWRFSGSAGPGSNL Sbjct: 300 ALYGVMVDTSHKEGGAQGGNVGAYYDLSKRTTLYGFANYMKNQANAGWRFSGSAGPGSNL 359 Query: 366 AGADINGKSLIGLQMGILHRF 386 AGADINGKSL+GLQMGILHRF Sbjct: 360 AGADINGKSLVGLQMGILHRF 380 >ref|YP_004752740.1| outer membrane porin, ompC family [Collimonas fungivorans Ter331] gb|AEK61917.1| outer membrane porin, OmpC family [Collimonas fungivorans Ter331] Length = 405 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 269/363 (74%), Positives = 307/363 (84%), Gaps = 1/363 (0%) Query: 24 ASTTALAQSTSNVTLYGTVDQYLGYMHSSSGKSLWALNDGAILRSRIGLKGYEDLGGGYA 83 A + LAQ+ N+TLYG +DQYLGY+HSSSGKS+ LNDGAILRSR+GL+G E+LGGGY Sbjct: 44 AGCSVLAQAEPNLTLYGDLDQYLGYIHSSSGKSVTGLNDGAILRSRLGLRGVEELGGGYQ 103 Query: 84 ATFTLENGFAGDTGGLADSTRLFDRQSWVGIKTPGAGEFRVGRQNSVPFFIGGAIDYTER 143 FTLE G +TGG ADS+RLFDRQ+WVG+ TP AGEFRVGRQNS+ FFIGGAIDYTER Sbjct: 104 TRFTLEQGLNANTGGAADSSRLFDRQAWVGMNTP-AGEFRVGRQNSIVFFIGGAIDYTER 162 Query: 144 TTYGSIINTFGVPSRFDNDLSWKSPRWAGFQFDIHYAMPETAGEGLGRRGVYQFGLDYTN 203 TTYGS+INTFGVPSR+DND+S+KSPR AGFQFD HYA+ ETAGE +G RGVYQ GLDY+ Sbjct: 163 TTYGSVINTFGVPSRYDNDISYKSPRVAGFQFDAHYALTETAGESVGARGVYQLGLDYSK 222 Query: 204 GPYRAGYAGLVAKPNAGGLYSNTVQYHNVYADYDYGPGKIYLAYVRSNNTTANANGNNAA 263 GPYRAGYAGL AKP A +S V YHN+YA+YDYG GK+Y AYVRSNN T+NA+GN AA Sbjct: 223 GPYRAGYAGLWAKPAANAQFSEKVVYHNLYANYDYGKGKLYFAYVRSNNVTSNASGNTAA 282 Query: 264 TILNNVSNPNNFFAGNDPNIQRFYNVYQVSADYRLTPQLRIGALYGVMVDTSHKDGGAQG 323 ILNNVS P N F G + ++QR YN++QVSADYRL+PQ RIGALYGVM DTS +D GAQG Sbjct: 283 AILNNVSIPGNAFTGANADVQRMYNIFQVSADYRLSPQWRIGALYGVMQDTSQRDSGAQG 342 Query: 324 GNVGAYYDLSKRTTLYGFANYMKNQANAGWRFSGSAGPGSNLAGADINGKSLIGLQMGIL 383 GN+G YYDLSKRTTLYGFA+YMKN ANAG+RFSGSAGP +NLAGADINGKSL GLQ GIL Sbjct: 343 GNLGTYYDLSKRTTLYGFASYMKNDANAGFRFSGSAGPTANLAGADINGKSLAGLQAGIL 402 Query: 384 HRF 386 HRF Sbjct: 403 HRF 405 >ref|YP_556160.1| OmpC family outer membrane porin [Burkholderia xenovorans LB400] gb|ABE36810.1| outer membrane porin, OmpC family [Burkholderia xenovorans LB400] Length = 372 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 204/367 (55%), Positives = 259/367 (70%), Gaps = 2/367 (0%) Query: 20 LLLAASTTALAQSTSNVTLYGTVDQYLGYMHSSSGKSLWALNDGAILRSRIGLKGYEDLG 79 L+L S + ++ S+VTLYG +DQ++ Y H+SSGKSL AL DGA+ RSRIG KG ED+G Sbjct: 8 LMLFLSFCTVCRAQSSVTLYGILDQFVAYEHTSSGKSLVALGDGALARSRIGFKGVEDIG 67 Query: 80 GGYAATFTLENGFAGDTGGLADSTRLFDRQSWVGIKTPGAGEFRVGRQNSVPFFIGGAID 139 GGY F LE+GF D+G LADS+RLFDRQ+WVGI TP G+FRVGRQNS F ID Sbjct: 68 GGYQIIFQLESGFNADSGALADSSRLFDRQAWVGINTP-VGQFRVGRQNSAAFNSSPEID 126 Query: 140 YTERTTYGSIINTFGVPSRFDNDLSWKSPRWAGFQFDIHYAMPETAGEGLGRRGVYQFGL 199 ++ R SI+N FG+P R+D+D+ +KSPR FQ + HYAMP AG GL R VYQ + Sbjct: 127 WSSRAMLTSIVNNFGLPGRYDDDIVYKSPRVYDFQIEAHYAMPGIAGGGLNRGAVYQIWV 186 Query: 200 DYTNGPYRAGYAGLVAKPNAGGLYSNTVQYHNVYADYDYGPGKIYLAYVRSNNTTANANG 259 D+ +GPY+A Y G VA P A +Y VQYH A+YDYG GK Y AY+ SNN T++A+G Sbjct: 187 DWAHGPYQAAYVGTVAVPLASAIYKEVVQYHQFTANYDYGRGKFYFAYIHSNNATSSASG 246 Query: 260 NNAATILNNVSNPNNFFAGNDPNIQRFYNVYQVSADYRLTPQLRIGALYGVMVDTSHKDG 319 N+A IL+ +S PNN+ G P++QRFYNV+QVS DYR++P IGAL G++ D S + Sbjct: 247 NDAVGILSAISVPNNYVLGTTPDVQRFYNVFQVSVDYRISPAFTIGALIGMIRDQSGQGN 306 Query: 320 GAQGGNVGAYYDLSKRTTLYGFANYMKNQANAGWRFSGSAGPGSNLAGADINGKSLIGLQ 379 GGNVG Y +SKRT+ YG A MKN+ NAG+RFSGS P N G+DING++LIGLQ Sbjct: 307 DVYGGNVGFIYSVSKRTSFYGSAGLMKNENNAGFRFSGSGAP-PNFTGSDINGRNLIGLQ 365 Query: 380 MGILHRF 386 +GILH F Sbjct: 366 LGILHLF 372 >ref|YP_001565451.1| porin [Delftia acidovorans SPH-1] gb|ABX37066.1| porin Gram-negative type [Delftia acidovorans SPH-1] Length = 383 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 208/381 (54%), Positives = 262/381 (68%), Gaps = 14/381 (3%) Query: 13 RTPVAMGLLLAASTTAL------AQSTSNVTLYGTVDQYLGYMHSSSGKSLWALNDGAIL 66 R P L + A TT L A + S+VT+YG+VDQY+ +M SSSG S+ L DGA+L Sbjct: 10 RVPQRGALRILALTTVLGAWGAGAHAQSSVTIYGSVDQYINHMRSSSGASMTTLEDGALL 69 Query: 67 RSRIGLKGYEDLGGGYAATFTLENGFAGDTGGLADSTRLFDRQSWVGIKTPGAGEFRVGR 126 RSR+G +G+EDLGGG A F LE G D G ADSTR FDRQSWVG+ G GE R+GR Sbjct: 70 RSRLGFRGHEDLGGGLYAKFQLEMGINADNGTQADSTRGFDRQSWVGLGG-GWGEVRLGR 128 Query: 127 QNSVPFFIGGAIDYTERTTYGSIINTFGVPSRFDNDLSWKSPRWAGFQFDIHYAMPETAG 186 QN+V F G ID+T R T GS++N FGVPSRFDND+S+ SPR AGF F+ HYAM ET Sbjct: 129 QNTVIFGRGDYIDFTSR-TLGSMVNNFGVPSRFDNDISYTSPRMAGFLFEAHYAMAETGA 187 Query: 187 EGLGRRGVYQFGLDYTNGPYRAGYAGLVAKPNAGGLYSNTVQYHNVYADYDYGPGKIYLA 246 R+ +YQ GLDY NGPYR GYAGL A+ Y++ V+Y N+YA+YDYG GK+ LA Sbjct: 188 P--ARQAIYQLGLDYLNGPYRVGYAGLYARAPQNAAYTDAVRYDNLYANYDYGKGKVQLA 245 Query: 247 YVRSNNTTANANGNNAATILNNVSNPNNFFAGNDPNIQRFYNVYQVSADYRLTPQLRIGA 306 +VRSNN+TA + GNN T+L NV AG + +++RFY V+Q+SADYR+TPQLR+GA Sbjct: 246 FVRSNNSTAGSAGNNTGTVLGNVG---GLVAGTNADVRRFYRVWQLSADYRVTPQLRVGA 302 Query: 307 LYGVMVDTSHKDGGAQGGNVGAYYDLSKRTTLYGFANYMKNQANAGWRFSGSAGPGSNLA 366 L+G + D S GA GG V AYYDLSKRT LY A +KN NAG+R + S G N Sbjct: 303 LWGRIQDGSDSGRGASGGAVAAYYDLSKRTMLYAVAEQLKNDRNAGFRLAASGGMKPNFT 362 Query: 367 GA-DINGKSLIGLQMGILHRF 386 A D+NG+++ G+Q+G+LHRF Sbjct: 363 SADDVNGRTIKGVQLGVLHRF 383 >ref|YP_004487744.1| porin [Delftia sp. Cs1-4] gb|AEF89389.1| porin Gram-negative type [Delftia sp. Cs1-4] Length = 383 Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 208/381 (54%), Positives = 261/381 (68%), Gaps = 14/381 (3%) Query: 13 RTPVAMGLLLAASTTAL------AQSTSNVTLYGTVDQYLGYMHSSSGKSLWALNDGAIL 66 R P L + A TT L AQ+ S+VT+YG+VDQY+ +M SSSG S+ L DGA+L Sbjct: 10 RVPQRGALRILALTTVLGAWGAGAQAQSSVTIYGSVDQYINHMRSSSGASMTTLEDGALL 69 Query: 67 RSRIGLKGYEDLGGGYAATFTLENGFAGDTGGLADSTRLFDRQSWVGIKTPGAGEFRVGR 126 RSR+G +G EDLGGG A F LE G D G ADSTR FDRQSWVG+ G GE R+GR Sbjct: 70 RSRLGFRGQEDLGGGLYAKFQLEMGINADNGTQADSTRGFDRQSWVGLGG-GWGEVRLGR 128 Query: 127 QNSVPFFIGGAIDYTERTTYGSIINTFGVPSRFDNDLSWKSPRWAGFQFDIHYAMPETAG 186 QN+V F G ID+T R T GS++N FGVPSRFDND+S+ SPR AGF F+ HYAM ET Sbjct: 129 QNTVIFGRGDYIDFTSR-TLGSMVNNFGVPSRFDNDISYTSPRMAGFLFEAHYAMAETGA 187 Query: 187 EGLGRRGVYQFGLDYTNGPYRAGYAGLVAKPNAGGLYSNTVQYHNVYADYDYGPGKIYLA 246 R+ +YQ GLDY N PYR GYAGL A+ Y++ V+Y N+YA+YDYG GK+ LA Sbjct: 188 P--ARQAIYQLGLDYLNAPYRVGYAGLYARAPQSAAYTDAVRYDNLYANYDYGKGKVQLA 245 Query: 247 YVRSNNTTANANGNNAATILNNVSNPNNFFAGNDPNIQRFYNVYQVSADYRLTPQLRIGA 306 +VRSNN+TA + GNN T+L NV AG + +++RFY V+Q+SADYR+TPQLR+GA Sbjct: 246 FVRSNNSTAGSAGNNTGTVLGNVG---GLVAGTNADVRRFYRVWQLSADYRVTPQLRVGA 302 Query: 307 LYGVMVDTSHKDGGAQGGNVGAYYDLSKRTTLYGFANYMKNQANAGWRFSGSAGPGSNLA 366 L+G + D S GA GG V AYYDLSKRT LY A +KN NAG+R + S G N Sbjct: 303 LWGRIQDGSDSGRGASGGAVAAYYDLSKRTMLYAVAEQLKNDRNAGFRLAASGGMKPNFT 362 Query: 367 GA-DINGKSLIGLQMGILHRF 386 A D+NG+++ G+Q+G+LHRF Sbjct: 363 SADDVNGRTIKGVQLGVLHRF 383