BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4882.p (497 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777145.1| gluconate 2-dehydrogenase [Herbaspirillum se... 709 0.0 ref|YP_004476390.1| gluconate 2-dehydrogenase (acceptor) [Pseudo... 548 e-153 ref|YP_004118238.1| gluconate 2-dehydrogenase (acceptor) [Pantoe... 545 e-153 ref|ZP_06834172.1| cytochrome-c oxidase protein [Gluconacetobact... 469 e-130 ref|YP_002546119.1| cytochrome-c oxidase protein [Agrobacterium ... 462 e-128 >ref|YP_003777145.1| gluconate 2-dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ65237.1| gluconate 2-dehydrogenase (acceptor) protein [Herbaspirillum seropedicae SmR1] Length = 499 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 397/489 (81%), Positives = 431/489 (88%), Gaps = 3/489 (0%) Query: 9 LAATLLATSAMAQTPEPASAPPDVPAAAPAPAVSPEAALIERGRYLAVASDCIACHTAPR 68 +A + LA + + T A A A APAPA+SPEAALIERG YLA+ASDCIACHTAPR Sbjct: 14 MAGSALAQTTDSNTTPSADATASAAAPAPAPAISPEAALIERGHYLAIASDCIACHTAPR 73 Query: 69 GKPMAGGLAIASPVGEIIATNITPSKSHGIGNYSEAQFAAALRRGVRADGANLYPAMPYT 128 GKPMAGGLAIASPVGEIIATNITPSK+HGIGNY+E QFAAALRRGVRADGANLYPAMPYT Sbjct: 74 GKPMAGGLAIASPVGEIIATNITPSKTHGIGNYTEEQFAAALRRGVRADGANLYPAMPYT 133 Query: 129 AYAALNDADVHALYAYFMKGVAPVDTPTRETALPFPMNIRASMKVWNALFLKDQPLAPAP 188 AYAAL+DADV ALYAYFMKGVAPVD TR T LPFPMN+R SMK WNALFLK+QPL P P Sbjct: 134 AYAALSDADVQALYAYFMKGVAPVDVATRPTDLPFPMNLRWSMKAWNALFLKEQPLPPQP 193 Query: 189 QRSAQWLRGRYLAEGPAHCSSCHTPRGFLMQEKTNLALSGAQVGPWYAPNITPHPTAGIG 248 QRSAQWLRGRYLAEGPAHCS+CHTPRG+LMQEK +L L+GAQVGPWYAPNIT HP+AGIG Sbjct: 194 QRSAQWLRGRYLAEGPAHCSTCHTPRGWLMQEKPDLQLAGAQVGPWYAPNITSHPSAGIG 253 Query: 249 TWSQDELVAYLKTGRVEGRAQAAGSMAEAITHSFSKLTDEDLRAIAVYLKETPAIGPDSS 308 +WSQD+LVAYL+TGR+EGRAQAAGSMAEAITHSFS+LT+EDLRAIAVY+K+ PAI + Sbjct: 254 SWSQDDLVAYLRTGRLEGRAQAAGSMAEAITHSFSRLTEEDLRAIAVYIKDRPAIATGDA 313 Query: 309 TPPTLGTRFEQGKAGNALAQFRGRTLAADSPEEIRGARLFSASCASCHGYNGQGTRDGYY 368 G+RF+QGKAGNALAQFRGRTL+A+SPEEIRGAR+FSASCASCHGYNGQG+RDGYY Sbjct: 314 QGS--GSRFDQGKAGNALAQFRGRTLSAESPEEIRGARIFSASCASCHGYNGQGSRDGYY 371 Query: 369 PSLFHNSATAGVNANNLIATILYGVERETEDGGHVFMPPFGDQPNALNKLSNEDVAALSN 428 PSLF NSATAGVNANNLIATILYGV+RETE GGHVFMPPFGDQPNALNKLSN DVAALSN Sbjct: 372 PSLFRNSATAGVNANNLIATILYGVDRETEQGGHVFMPPFGDQPNALNKLSNADVAALSN 431 Query: 429 YLLKYYGNPDLKVKPEDVAVIRQGGPRSPLLLVARIGMGVGAVVVVLLLLLGALMVLRRK 488 YLLKYYG P VK EDV VIRQGGPRSPLLL+ARIGMGV V+V LLLL LMV RK Sbjct: 432 YLLKYYGKPAATVKAEDVEVIRQGGPRSPLLLMARIGMGVAVAVLV-LLLLVGLMVALRK 490 Query: 489 RIDPEHDWK 497 R DPEHDWK Sbjct: 491 RPDPEHDWK 499 >ref|YP_004476390.1| gluconate 2-dehydrogenase (acceptor) [Pseudomonas fulva 12-X] gb|AEF24296.1| Gluconate 2-dehydrogenase (acceptor) [Pseudomonas fulva 12-X] Length = 469 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 286/432 (66%), Positives = 339/432 (78%), Gaps = 6/432 (1%) Query: 47 LIERGRYLAVASDCIACHTAPRGKPMAGGLAIASPVGEIIATNITPSKSHGIGNYSEAQF 106 LI+RG Y A ASDC+ACHTA GKPMAGGL +ASPVG+I+ATNITPSK GIG+Y+E QF Sbjct: 29 LIKRGEYTATASDCVACHTAHGGKPMAGGLVMASPVGDIVATNITPSKQFGIGHYTEQQF 88 Query: 107 AAALRRGVRADGANLYPAMPYTAYAALNDADVHALYAYFMKGVAPVDTPTRETALPFPMN 166 A ALR+GVRADGANLYPAMPYTAYA L+D DVHALYAYFM+GVAPVD P ET+LPFPMN Sbjct: 89 ADALRKGVRADGANLYPAMPYTAYAKLSDDDVHALYAYFMQGVAPVDEPVAETSLPFPMN 148 Query: 167 IRASMKVWNALFLKDQPLAPAPQRSAQWLRGRYLAEGPAHCSSCHTPRGFLMQEKTNLAL 226 IR SMK WN LF DQPLA + SA W RGRYL EGPAHC +CHTPRG LMQE+ + L Sbjct: 149 IRLSMKAWNLLFHDDQPLADDAEHSAAWNRGRYLVEGPAHCGTCHTPRGLLMQEQNDRFL 208 Query: 227 SGAQVGPWYAPNITPHPTAGIGTWSQDELVAYLKTGRVEGRAQAAGSMAEAITHSFSKLT 286 +GAQVGPWYAPNITPH +GIG+W+ D LV YLKTG +EG+AQAAGSMAEAI+HSF L Sbjct: 209 AGAQVGPWYAPNITPHRNSGIGSWTADGLVQYLKTGHLEGKAQAAGSMAEAISHSFQHLR 268 Query: 287 DEDLRAIAVYLKETPAIGPDSSTPPTLGTRFEQGKAGNALAQFRGRTLAADSPEEIRGAR 346 D+DL+AIA YL PA+ +RF QG+AGN L+ RG ++ E+ +GAR Sbjct: 269 DDDLQAIAEYLMSVPAVASADGFSGE-QSRFNQGQAGNQLSDLRG----IEAAEDAKGAR 323 Query: 347 LFSASCASCHGYNGQGTRDGYYPSLFHNSATAGVNANNLIATILYGVERETEDGGHVFMP 406 ++S SCASCHGYNGQGT D YYPSLF NSA GVN +NL+ATILYGV+R+T GHVFMP Sbjct: 324 IYSGSCASCHGYNGQGTTDAYYPSLFSNSALTGVNTSNLLATILYGVDRKTAQ-GHVFMP 382 Query: 407 PFGDQPNALNKLSNEDVAALSNYLLKYYGNPDLKVKPEDVAVIRQGGPRSPLLLVARIGM 466 PFGDQPNAL++LSN+++AAL+NYL++ YG+ V +DV IRQGGP S LLL+AR+GM Sbjct: 383 PFGDQPNALDRLSNDEIAALANYLVRQYGDGKQTVSADDVQTIRQGGPASNLLLLARLGM 442 Query: 467 GVGAVVVVLLLL 478 GA+V + L + Sbjct: 443 LAGALVALGLTI 454 >ref|YP_004118238.1| gluconate 2-dehydrogenase (acceptor) [Pantoea sp. At-9b] gb|ADU71682.1| Gluconate 2-dehydrogenase (acceptor) [Pantoea sp. At-9b] Length = 468 Score = 545 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 288/471 (61%), Positives = 350/471 (74%), Gaps = 10/471 (2%) Query: 19 MAQTPEPASAPPDVPAAAPAPAVSPEAALIERGRYLAVASDCIACHTAPRGKPMAGGLAI 78 M + +PA+ + A A + + AL+++G YLAVASDC ACH+A +P AGG AI Sbjct: 1 MMRKLKPAALALMLACVAGAVHAASDDALVKKGEYLAVASDCTACHSASAAQPFAGGKAI 60 Query: 79 ASPVGEIIATNITPSKSHGIGNYSEAQFAAALRRGVRADGANLYPAMPYTAYAALNDADV 138 ASPVGEIIATNITPSK+ GIGNYSE QFA ALR+G+RADGA+LYPAMPYTAYA L D D+ Sbjct: 61 ASPVGEIIATNITPSKTDGIGNYSEQQFADALRKGIRADGAHLYPAMPYTAYATLTDEDI 120 Query: 139 HALYAYFMKGVAPVDTPTRETALPFPMNIRASMKVWNALFLKDQPLAPAPQRSAQWLRGR 198 HALYAYFM GV VD PT +T LPFP+N+R SM WNALFL P ++A W RGR Sbjct: 121 HALYAYFMSGVQAVDRPTAQTHLPFPLNLRFSMMFWNALFLNAPGYQPDASQTASWNRGR 180 Query: 199 YLAEGPAHCSSCHTPRGFLMQEKTNLALSGAQVGPWYAPNITPHPTAGIGTWSQDELVAY 258 YL EG AHCS+CHTPRGFLMQEKT A +GAQVG WYAPNIT +P +GIG WSQ ELV Y Sbjct: 181 YLVEGAAHCSTCHTPRGFLMQEKTAAAFTGAQVGSWYAPNITANPVSGIGQWSQQELVTY 240 Query: 259 LKTGRVEGRAQAAGSMAEAITHSFSKLTDEDLRAIAVYLKETPAIGPDSSTPPTLGTRFE 318 L+TGR+ G+AQAAGSMAEAITHSF L+D DL AIA Y++ PD + + TRF Sbjct: 241 LRTGRLAGKAQAAGSMAEAITHSFQHLSDADLTAIAEYMQSV----PDHTAFASGATRFT 296 Query: 319 QGKAGNALAQFRGRTLAADSPEEIRGARLFSASCASCHGYNGQGTRDGYYPSLFHNSATA 378 QG GN LA FRG A +P GARLFS +CASCHG +GQGT+DG+YPSLFHNSATA Sbjct: 297 QGTPGNNLAAFRGDAFA--TPVSDEGARLFSGNCASCHGSSGQGTKDGFYPSLFHNSATA 354 Query: 379 GVNANNLIATILYGVERETEDGGHVFMPPFGDQPNALNKLSNEDVAALSNYLLKYYGNPD 438 N++NLIATIL+GVER++ G+VFMPPFG QPNALN L+++ VA LSN++L YGN D Sbjct: 355 EHNSSNLIATILFGVERDSAQ-GNVFMPPFGAQPNALNHLNDQQVATLSNWILHRYGNKD 413 Query: 439 LKVKPEDVAVIRQGGPRSPLLLVARIGMGVGAVVVVLLLLLGALMVLRRKR 489 + V PE VA IR+GGP SPL+L+A++G+ VG + + ++L ++ RRKR Sbjct: 414 VTVSPEQVAEIRRGGPASPLVLLAQLGVAVGVLAAIAIVL---WLLWRRKR 461 >ref|ZP_06834172.1| cytochrome-c oxidase protein [Gluconacetobacter hansenii ATCC 23769] gb|EFG84685.1| cytochrome-c oxidase protein [Gluconacetobacter hansenii ATCC 23769] Length = 472 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 236/442 (53%), Positives = 307/442 (69%), Gaps = 13/442 (2%) Query: 51 GRYLAVASDCIACHTAPRGKPMAGGLAIASPVGEIIATNITPSKSHGIGNYSEAQFAAAL 110 G Y+AV SDC+ACHTAP GKP AGGLA+ +P+G + +TNITPSK++GIG YSEA F+ A+ Sbjct: 40 GAYMAVTSDCVACHTAPGGKPFAGGLAMKTPLGTMYSTNITPSKTYGIGEYSEADFSRAV 99 Query: 111 RRGVRADGANLYPAMPYTAYAALNDADVHALYAYFMKGVAPVDTPTRETALPFPMNIRAS 170 R+G+R DG+NLYPAMPYTAY+ + D D+H LY YFMK V PV++ +TALPFPMNIR+S Sbjct: 100 RKGIRKDGSNLYPAMPYTAYSYMTDQDIHDLYLYFMKSVQPVESAPPKTALPFPMNIRSS 159 Query: 171 MKVWNALFLKDQPLAPAPQRSAQWLRGRYLAEGPAHCSSCHTPRGFLMQEKTNLALSGAQ 230 M WN LF + P P RSA+W RG YLA+GPAHC +CHTPRGFLMQE+ + AL G Sbjct: 160 MLFWNILFRNNTTYQPDPSRSAEWNRGAYLAQGPAHCGTCHTPRGFLMQEEASQALGGGS 219 Query: 231 VGPWYAPNITPHPTAGIGTWSQDELVAYLKTGRVEGRAQAAGSMAEAITHSFSKLTDEDL 290 +G WYAPNIT +GIG WSQDE+ YLK+G ++G AQAAG M EA+ HSF LT+ DL Sbjct: 220 LGSWYAPNITSDKISGIGNWSQDEIKTYLKSGHIDGLAQAAGGMGEAVEHSFQHLTEADL 279 Query: 291 RAIAVYLKETPAIGPDSSTPPTLG--TRFEQGKAGNALAQFRG-RTLAADSPEEIRGARL 347 A+A YL T + P G +RF G+ ++ + RG + + ++ +I GA L Sbjct: 280 NALATYLASTQPV-----RDPADGNLSRFALGQPVSSADRVRGDQPIRSEDNPDISGAEL 334 Query: 348 FSASCASCHGYNGQGTRDGYYPSLFHNSATAGVNANNLIATILYGVERETEDGGHVFMPP 407 F +CASCH Y QG+RDGYYPSL+HNS T N +NLIATIL+G++R G FMP Sbjct: 335 FMGNCASCHNYKAQGSRDGYYPSLWHNSVTGASNPDNLIATILFGIDRHVA-GAQAFMPG 393 Query: 408 FGDQPNALNKLSNEDVAALSNYLLKYYGNPDLKVKPEDVAVIRQGGPRSPLLLVARIGMG 467 FG++ +L++E++A L+ Y+ YG P + V P VA IRQGGP+SPLL+++RIGM Sbjct: 394 FGEKKTDAVQLNDEEIAKLTKYVFDTYGRPQVSVSPAQVATIRQGGPKSPLLVLSRIGMA 453 Query: 468 VGAVVVVLLLLLGALMVLRRKR 489 GA+V+ LG +LR R Sbjct: 454 GGAIVIA----LGCFWLLRTFR 471 >ref|YP_002546119.1| cytochrome-c oxidase protein [Agrobacterium radiobacter K84] gb|ACM28186.1| cytochrome-c oxidase protein [Agrobacterium radiobacter K84] Length = 472 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 246/433 (56%), Positives = 298/433 (68%), Gaps = 6/433 (1%) Query: 48 IERGRYLAVASDCIACHTAPRGKPMAGGLAIASPVGEIIATNITPSKSHGIGNYSEAQFA 107 ++RG Y+A ASDC ACHTAP GKP AGGL I SPVG I +TNITPS + GIG Y+E QFA Sbjct: 33 VKRGAYIATASDCSACHTAPGGKPFAGGLGIVSPVGTIYSTNITPSATAGIGQYTEEQFA 92 Query: 108 AALRRGVRADGANLYPAMPYTAYAALNDADVHALYAYFMKGVAPVDTPTRETALPFPMNI 167 A+R GVRADGANLYPAMPYT+Y L DAD+H LYAYF GV PVDT TALPFPMNI Sbjct: 93 RAVRAGVRADGANLYPAMPYTSYNVLTDADIHDLYAYFQHGVTPVDTAPTRTALPFPMNI 152 Query: 168 RASMKVWNALFLKDQPLAPAPQRSAQWLRGRYLAEGPAHCSSCHTPRGFLMQEKTNLALS 227 R SM WN LFL +SA+W RG+YL +G AHCS+CHTPRGFLMQE ++ L Sbjct: 153 RLSMMAWNLLFLGSGHSEADATQSAEWNRGKYLVDGAAHCSTCHTPRGFLMQELSSHYLG 212 Query: 228 GAQVGPWYAPNITPHPTAGIGTWSQDELVAYLKTGRVEGRAQAAGSMAEAITHSFSKLTD 287 GAQVG WYAPNIT +GIG+WS+DEL YL TG + G+AQAAGSM EA+ HSFS+LT Sbjct: 213 GAQVGQWYAPNITSDANSGIGSWSKDELAHYLATGSLPGKAQAAGSMGEAVEHSFSQLTP 272 Query: 288 EDLRAIAVYLKETPAIGPDSSTPPTLGTRFEQGKAGNALAQFRGRT-LAADSPEEIRGAR 346 +D+ AI+ Y+K + S +RF GK + LA RG + +D+ E+ GA Sbjct: 273 DDISAISTYIKTVAPLHDTSDEQ----SRFGYGKPFSQLASLRGANPIRSDTDEQASGAV 328 Query: 347 LFSASCASCHGYNGQGTRDGYYPSLFHNSATAGVNANNLIATILYGVERETEDGGHVFMP 406 LF +CASCH +GQG++D YYPSLFHNS T N +NLIATIL GV R T G FMP Sbjct: 329 LFYGNCASCHQASGQGSKDTYYPSLFHNSVTGSANHSNLIATILNGVNRTTPK-GQAFMP 387 Query: 407 PFGDQPNALNKLSNEDVAALSNYLLKYYGNPDLKVKPEDVAVIRQGGPRSPLLLVARIGM 466 FG + N +N L++ VA L+NY++ YG V P DVA +R GGP S LLL+ARIG+ Sbjct: 388 GFGGKANDINALNDAQVATLANYVIDNYGRAGTPVSPADVAQVRAGGPASSLLLLARIGI 447 Query: 467 GVGAVVVVLLLLL 479 V +V + +LLL Sbjct: 448 AVAVIVGLAILLL 460