BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4881.p (543 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777144.1| choline dehydrogenase [Herbaspirillum serope... 1036 0.0 ref|YP_004476389.1| FAD dependent oxidoreductase [Pseudomonas fu... 891 0.0 ref|YP_004118237.1| glucose-methanol-choline oxidoreductase [Pan... 866 0.0 ref|YP_002546118.1| dehydrogenase large subunit protein [Agrobac... 651 0.0 ref|YP_001005685.1| putative dehydrogenase subunit [Yersinia ent... 543 e-152 >ref|YP_003777144.1| choline dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ65236.1| choline dehydrogenase protein [Herbaspirillum seropedicae SmR1] Length = 543 Score = 1036 bits (2680), Expect = 0.0, Method: Composition-based stats. Identities = 512/543 (94%), Positives = 533/543 (98%) Query: 1 MNSNNKAEVVIVGTGVVGVLIAEQLLDAGIPVLMLEAGPRVARAEVVENFRNLPLALKGD 60 MNSNNKAEVVIVGTGVVGVLIAEQLL+AGIPV MLEAGPRVARAEVVENFRNLPLALKGD Sbjct: 1 MNSNNKAEVVIVGTGVVGVLIAEQLLNAGIPVRMLEAGPRVARAEVVENFRNLPLALKGD 60 Query: 61 PSSCYPPRPWAPHPMPSSENPDDHYLELSGPDKYAQTFIRYAGGSTWHWAGTCWRLTPED 120 PSSCYPPRPWAPHPMPSSENPDDHYLELSGPDKYAQTFIRYAGGSTWHWAGTCWRLTPED Sbjct: 61 PSSCYPPRPWAPHPMPSSENPDDHYLELSGPDKYAQTFIRYAGGSTWHWAGTCWRLTPED 120 Query: 121 MQLHTLYGVGRDWAFGYDVLEPYYTRVEHKLGICGPSDPALQWPPQRSAPYPMPALPFSP 180 M+LH+LYGVGRDWAFGYDVLEPYYTRVEH+LGICGPSDPALQWPPQRSAPYPMPALPFSP Sbjct: 121 MRLHSLYGVGRDWAFGYDVLEPYYTRVEHQLGICGPSDPALQWPPQRSAPYPMPALPFSP 180 Query: 181 GEQRFTDVVRELGYHNIPTAQARNSGMPYDERPACCANNNCVPVCPVGAKYDAATALARL 240 GEQRFT+VV+ LGY NIPTAQARNSGMPYD+RPACCANNNCVPVCPVGAKYDAATALARL Sbjct: 181 GEQRFTEVVQALGYRNIPTAQARNSGMPYDDRPACCANNNCVPVCPVGAKYDAATALARL 240 Query: 241 ESKGATILTDAVVYRVETDDANRVNAVNYFDANKVSHRVTGKIFVLACNGIETPKLLLMS 300 E+KGATILTDAVVYRV+TD +RV AVNYFDANK+SHR+TGKIFVLACNGIETPKLLLMS Sbjct: 241 EAKGATILTDAVVYRVDTDANDRVEAVNYFDANKLSHRITGKIFVLACNGIETPKLLLMS 300 Query: 301 ANSRNPHGLANSSDQVGRNMMDHPQLTMTLTLSEPYWSGVGPVVNSGIMETSQGSFRSEH 360 ANSRNPHGLAN SDQVGRNMMDHPQLTMTLTLSEPYWSGVGPVVNSGIMETSQG+FRSEH Sbjct: 301 ANSRNPHGLANRSDQVGRNMMDHPQLTMTLTLSEPYWSGVGPVVNSGIMETSQGAFRSEH 360 Query: 361 AGAYFRYNNFARNRFVTFAALKKGLVGQALDEEIRRMTACTADVVLAHEVLPDADNRLTL 420 AGAYFRYNNFARNRFVTFAALKKGLVGQALDEEIRRMTACTAD+VLAHEVLPDA+NRLTL Sbjct: 361 AGAYFRYNNFARNRFVTFAALKKGLVGQALDEEIRRMTACTADIVLAHEVLPDAENRLTL 420 Query: 421 SAKKDWLGLPRPSIHYDVGDYTRKSAEQYSLPIGRKIAEAMGATDIKVSPAFAQSKHIMG 480 S+KKDWLGLPRP+IHYDVGDYTR+SAE YSLPIGRKIAEAMGATDIKVSP FAQSKHIMG Sbjct: 421 SSKKDWLGLPRPAIHYDVGDYTRRSAELYSLPIGRKIAEAMGATDIKVSPKFAQSKHIMG 480 Query: 481 GTIMGLDAANSVVDPDCRAHDHDNLFLPGGGAMPSTACGNSTLSMAALGLKAADAIVRQL 540 GTIMGLD ANSVVDPDCRAHDHDNL+LPGGGAMPSTACGNST+SMAALGLKAADAI+RQL Sbjct: 481 GTIMGLDPANSVVDPDCRAHDHDNLYLPGGGAMPSTACGNSTISMAALGLKAADAILRQL 540 Query: 541 QKA 543 QKA Sbjct: 541 QKA 543 >ref|YP_004476389.1| FAD dependent oxidoreductase [Pseudomonas fulva 12-X] gb|AEF24295.1| FAD dependent oxidoreductase [Pseudomonas fulva 12-X] Length = 544 Score = 891 bits (2302), Expect = 0.0, Method: Composition-based stats. Identities = 436/544 (80%), Positives = 485/544 (89%), Gaps = 1/544 (0%) Query: 1 MNSNNKAEVVIVGTGVVGVLIAEQLLDAGIPVLMLEAGPRVARAEVVENFRNLPLALKGD 60 M S N A+VVIVGTGVVGV IAE LLDAG+ VL+LEAGPRV RAE+VENFRNLPL LKGD Sbjct: 1 MKSLNSADVVIVGTGVVGVTIAEHLLDAGLSVLLLEAGPRVTRAEIVENFRNLPLGLKGD 60 Query: 61 PSSCYPPRPWAPHPMPSSENPDDHYLELSGPDKYAQTFIRYAGGSTWHWAGTCWRLTPED 120 ++CYPPRPWAPHPMPS E PDD YL+LSGPD YAQTFIRYAGGSTWHWAGT WRLTPED Sbjct: 61 STACYPPRPWAPHPMPSFEKPDDAYLQLSGPDAYAQTFIRYAGGSTWHWAGTSWRLTPED 120 Query: 121 MQLHTLYGVGRDWAFGYDVLEPYYTRVEHKLGICGPSDPALQWPP-QRSAPYPMPALPFS 179 M+L TLYGVGRDWAF Y LEPYYTR E+KLGICGPS+P QWPP RS PYPMP LPFS Sbjct: 121 MRLRTLYGVGRDWAFDYQELEPYYTRTEYKLGICGPSNPEDQWPPLPRSKPYPMPPLPFS 180 Query: 180 PGEQRFTDVVRELGYHNIPTAQARNSGMPYDERPACCANNNCVPVCPVGAKYDAATALAR 239 PGEQRFT+VV++LGY N+P AQARNSGMPYD+RPACCANNNCVPVCPVGAKYDAATAL R Sbjct: 181 PGEQRFTEVVQKLGYRNLPVAQARNSGMPYDDRPACCANNNCVPVCPVGAKYDAATALGR 240 Query: 240 LESKGATILTDAVVYRVETDDANRVNAVNYFDANKVSHRVTGKIFVLACNGIETPKLLLM 299 LE+KGA I TDAVVY+VET + NR+ AV+Y D K HR+ GK+FVLACNG+ET KLLLM Sbjct: 241 LEAKGAVITTDAVVYQVETGEGNRIQAVHYLDQEKQRHRIGGKLFVLACNGLETAKLLLM 300 Query: 300 SANSRNPHGLANSSDQVGRNMMDHPQLTMTLTLSEPYWSGVGPVVNSGIMETSQGSFRSE 359 SA+ RNP+G+ANSSDQVGRNMMDHPQ+++ LTL+EPYWSGVGPVVNSGIM+TSQG FRSE Sbjct: 301 SADERNPNGVANSSDQVGRNMMDHPQISLNLTLAEPYWSGVGPVVNSGIMQTSQGDFRSE 360 Query: 360 HAGAYFRYNNFARNRFVTFAALKKGLVGQALDEEIRRMTACTADVVLAHEVLPDADNRLT 419 HAGAYFR+NNFARNRFVTF AL KGLVG+ALDEEIRR+TACTA+VV+AHE+LPDA+NRLT Sbjct: 361 HAGAYFRFNNFARNRFVTFEALGKGLVGKALDEEIRRLTACTANVVIAHEMLPDANNRLT 420 Query: 420 LSAKKDWLGLPRPSIHYDVGDYTRKSAEQYSLPIGRKIAEAMGATDIKVSPAFAQSKHIM 479 LS KKDWLGLP+P+IHYDVGDY RKS E+YS PI +IAEAMGATD+KV+P FAQSKHIM Sbjct: 421 LSDKKDWLGLPKPAIHYDVGDYVRKSFERYSRPIALRIAEAMGATDVKVAPKFAQSKHIM 480 Query: 480 GGTIMGLDAANSVVDPDCRAHDHDNLFLPGGGAMPSTACGNSTLSMAALGLKAADAIVRQ 539 GGTIMGLD +SVVD CRAHDHDNLFLPGGGAMPSTACGNST++M ALGL+AADAIV Q Sbjct: 481 GGTIMGLDPRDSVVDSHCRAHDHDNLFLPGGGAMPSTACGNSTITMVALGLRAADAIVSQ 540 Query: 540 LQKA 543 L+ A Sbjct: 541 LKGA 544 >ref|YP_004118237.1| glucose-methanol-choline oxidoreductase [Pantoea sp. At-9b] gb|ADU71681.1| glucose-methanol-choline oxidoreductase [Pantoea sp. At-9b] Length = 542 Score = 866 bits (2238), Expect = 0.0, Method: Composition-based stats. Identities = 412/523 (78%), Positives = 459/523 (87%), Gaps = 3/523 (0%) Query: 22 AEQLLDAGIPVLMLEAGPRVARAEVVENFRNLPLALKGDPSSCYPPRPWAPHPMPSSENP 81 AEQLLDAGIPVLMLEAGPRV+RAE+VENFRNLPLA KG+P CYP R WAPHP P+ Sbjct: 22 AEQLLDAGIPVLMLEAGPRVSRAEIVENFRNLPLAAKGNPIECYPSREWAPHPEPAGAGK 81 Query: 82 DDHYLELSGPDKYAQTFIRYAGGSTWHWAGTCWRLTPEDMQLHTLYGVGRDWAFGYDVLE 141 YL+LSG D YAQ+++RYAGGSTWHWAGTCWRLTP DMQLHT YGVGRDWAF YD LE Sbjct: 82 G--YLQLSGNDSYAQSYVRYAGGSTWHWAGTCWRLTPADMQLHTRYGVGRDWAFDYDTLE 139 Query: 142 PYYTRVEHKLGICGPSDPALQWPPQRSAPYPMPALPFSPGEQRFTDVVRE-LGYHNIPTA 200 PYY R E+KLGICGP DPALQWP QRS PYPMPALPF PGE RFT+VVRE LG HNIPTA Sbjct: 140 PYYVRAEYKLGICGPDDPALQWPSQRSKPYPMPALPFGPGEARFTEVVREKLGLHNIPTA 199 Query: 201 QARNSGMPYDERPACCANNNCVPVCPVGAKYDAATALARLESKGATILTDAVVYRVETDD 260 QARNSG YD+RPACCANNNCVPVCPVGAKYD ATAL+RLE+KGATIL +AVV+R+ET+ Sbjct: 200 QARNSGTSYDDRPACCANNNCVPVCPVGAKYDGATALSRLEAKGATILDNAVVWRIETNA 259 Query: 261 ANRVNAVNYFDANKVSHRVTGKIFVLACNGIETPKLLLMSANSRNPHGLANSSDQVGRNM 320 +N + AV+Y+D +K SHRV+GK+F++ACNG+ETPKLLLMSA++RNP+G+ANSSDQVGRNM Sbjct: 260 SNHIEAVHYYDQHKQSHRVSGKLFIIACNGLETPKLLLMSADARNPNGIANSSDQVGRNM 319 Query: 321 MDHPQLTMTLTLSEPYWSGVGPVVNSGIMETSQGSFRSEHAGAYFRYNNFARNRFVTFAA 380 MDHPQ+TMT+TL EPYW+GVGPVVNSGIMETSQG FRSEHAGAYFR+NNFARNRFVTF A Sbjct: 320 MDHPQITMTVTLEEPYWAGVGPVVNSGIMETSQGDFRSEHAGAYFRFNNFARNRFVTFGA 379 Query: 381 LKKGLVGQALDEEIRRMTACTADVVLAHEVLPDADNRLTLSAKKDWLGLPRPSIHYDVGD 440 L+KGLVG+ALDEEIRRMTACTAD+VLAHE+LPDA+NRLTLS KKDWLGLP+P+IHYDVGD Sbjct: 380 LQKGLVGKALDEEIRRMTACTADIVLAHEILPDANNRLTLSDKKDWLGLPKPAIHYDVGD 439 Query: 441 YTRKSAEQYSLPIGRKIAEAMGATDIKVSPAFAQSKHIMGGTIMGLDAANSVVDPDCRAH 500 Y R+S YS PI +IAEAMGA D K S F QSKHIMGGTIMG D ANSVVD CRAH Sbjct: 440 YVRRSYNDYSKPIADRIAEAMGAIDKKYSKQFNQSKHIMGGTIMGNDPANSVVDNVCRAH 499 Query: 501 DHDNLFLPGGGAMPSTACGNSTLSMAALGLKAADAIVRQLQKA 543 DH NLFLPGGGAM STACGNSTL+M AL KAADAIV+Q Q+A Sbjct: 500 DHRNLFLPGGGAMASTACGNSTLTMVALAFKAADAIVKQAQEA 542 >ref|YP_002546118.1| dehydrogenase large subunit protein [Agrobacterium radiobacter K84] gb|ACM28185.1| dehydrogenase large subunit protein [Agrobacterium radiobacter K84] Length = 546 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 315/525 (60%), Positives = 395/525 (75%), Gaps = 3/525 (0%) Query: 22 AEQLLDAGIPVLMLEAGPRVARAEVVENFRNLPLALKGDPSSCYPPRPWAPHPMPSSENP 81 AEQ LDAG+ VLMLEAGPRV R ++VEN+RN+P K + ++ YP +PWAPH + Sbjct: 22 AEQALDAGLSVLMLEAGPRVERWQIVENYRNVPPRFKQNWNAPYPAKPWAPHIESELVDA 81 Query: 82 DDHYLELSGPD--KYAQTFIRYAGGSTWHWAGTCWRLTPEDMQLHTLYGVGRDWAFGYDV 139 YL+L GP+ Y Q ++RYAGG+TWHWAG CWRL P+DM++ +LYGVGRDWAF Y+ Sbjct: 82 TTDYLQLEGPNGRAYRQGYVRYAGGATWHWAGICWRLHPDDMRMKSLYGVGRDWAFDYNT 141 Query: 140 LEPYYTRVEHKLGICGPSDPALQWPP-QRSAPYPMPALPFSPGEQRFTDVVRELGYHNIP 198 LEPYYTR E+ LG+CGPS+ LQWPP RS PYPM +P+ PGEQRFTD +G N+P Sbjct: 142 LEPYYTRAEYALGVCGPSEVELQWPPLPRSKPYPMGRIPYGPGEQRFTDAAARVGITNLP 201 Query: 199 TAQARNSGMPYDERPACCANNNCVPVCPVGAKYDAATALARLESKGATILTDAVVYRVET 258 QARNSG+ YD RP CC NNNC PVCP+ AKYDAA+AL R+ESKG IL +AVVYRVET Sbjct: 202 APQARNSGVSYDGRPPCCGNNNCFPVCPISAKYDAASALPRIESKGGRILANAVVYRVET 261 Query: 259 DDANRVNAVNYFDANKVSHRVTGKIFVLACNGIETPKLLLMSANSRNPHGLANSSDQVGR 318 D + AV++F+ NK S +VTG++FV+ACN IETPKLLLMS + RNP+G+AN SDQVGR Sbjct: 262 DAKQNIQAVHFFNPNKESQKVTGRLFVIACNAIETPKLLLMSKDDRNPNGVANHSDQVGR 321 Query: 319 NMMDHPQLTMTLTLSEPYWSGVGPVVNSGIMETSQGSFRSEHAGAYFRYNNFARNRFVTF 378 N+MD P+++ + LSEP W+GVGPV S IM T QG+FRSEHAGA R N A + Sbjct: 322 NLMDQPKISAQMVLSEPMWTGVGPVQGSSIMMTGQGAFRSEHAGAMLRCENAALSAVGGL 381 Query: 379 AALKKGLVGQALDEEIRRMTACTADVVLAHEVLPDADNRLTLSAKKDWLGLPRPSIHYDV 438 AAL KGLVG+ALD EIRR++ACTA + + HE+L D +NRLTLS KKDWLGL +P+I+YDV Sbjct: 382 AALSKGLVGKALDAEIRRLSACTARLTIEHEILADPNNRLTLSDKKDWLGLSKPNIYYDV 441 Query: 439 GDYTRKSAEQYSLPIGRKIAEAMGATDIKVSPAFAQSKHIMGGTIMGLDAANSVVDPDCR 498 GDY R+S ++Y+LP+ +K+ +GA + ++ F S H+MG IMG D +SVVD DCR Sbjct: 442 GDYVRRSHQEYTLPLLKKLIAELGAVESSIATTFTNSDHMMGSCIMGTDPTDSVVDVDCR 501 Query: 499 AHDHDNLFLPGGGAMPSTACGNSTLSMAALGLKAADAIVRQLQKA 543 AHDH NLFLPGG AM + CGNST++MAAL +KAADAIV QL++ Sbjct: 502 AHDHPNLFLPGGAAMTTGGCGNSTITMAALAVKAADAIVDQLKRG 546 >ref|YP_001005685.1| putative dehydrogenase subunit [Yersinia enterocolitica subsp. enterocolitica 8081] emb|CAL11461.1| putative dehydrogenase subunit [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 550 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 274/544 (50%), Positives = 365/544 (67%), Gaps = 10/544 (1%) Query: 2 NSNNKAEVVIVGTGVVGVLIAEQLLDAGIPVLMLEAGPRVARAEVVENFRNLPLALKG-- 59 + N A+V+IVG+G+VG ++A+QL+ G VL+LEAG R+ R + VEN+RN+P + Sbjct: 9 DGNASADVIIVGSGIVGGMMADQLVAQGYSVLVLEAGLRIDRGQAVENWRNMPFDNRAGS 68 Query: 60 DPSSCYPPRPWAPHPMPSSENPDDHYLELSGPD--KYAQTFIRYAGGSTWHWAGTCWRLT 117 D YP +A P+ P+++Y+EL+GP + Q ++R GG+TWHWA +CWR Sbjct: 69 DYQGLYPQSEFATAPL---YFPENNYVELTGPSASSFKQGYLRTVGGTTWHWAASCWRHV 125 Query: 118 PEDMQLHTLYGVGRDWAFGYDVLEPYYTRVEHKLGICGPSDPALQWPPQRSAPYPMPALP 177 P D Q+ TLYGVGRDW YD LEPYY R E ++G+ GP+DP LQ P +RS PYPM +P Sbjct: 126 PNDFQMKTLYGVGRDWPISYDELEPYYCRAEDEIGVAGPNDPKLQSPSERSKPYPMDMVP 185 Query: 178 FSPGEQRFTDVVRELGYHNIPTAQARNSGMPYDERPACCANNNCVPVCPVGAKYDAATAL 237 ++ G+ RF +VV GY ++P Q R S P++ RP CC NNNC P+CP+GA Y+ + Sbjct: 186 WAHGDIRFAEVVNPHGYQSVPIPQGR-STRPWEGRPTCCGNNNCQPICPIGAMYNGIHHI 244 Query: 238 ARLESKGATILTDAVVYRVETDDANRVNAVNYFDANKVSHRVTGKIFVLACNGIETPKLL 297 R E KGA +L +AVVY+++T++ N+V AV++ D K SH+ TGK+F LACNGIETP+LL Sbjct: 245 ERAEIKGAVVLAEAVVYKIDTNEQNQVTAVHWLDNKKQSHQATGKVFALACNGIETPRLL 304 Query: 298 LMSANSRNPHGLANSSDQVGRNMMDHPQLTMTLTLSEPYWSGVGPVVNSGIMETSQGSFR 357 LM+AN +NP+G+ANSSDQVGRNMMDH T EP W G GP +S ++ G FR Sbjct: 305 LMAANEKNPNGIANSSDQVGRNMMDHSGFHCTFLAKEPLWLGRGPAQSSCLVGPRDGEFR 364 Query: 358 SEHAGAYFRYNNFARNRFVTFAALKKGLVGQALDEEIRRMTACTADVVLAHEVLPDADNR 417 +++ NN R T AL+ GLVG+ALDEEIRR A AD+ ++ E LPD DNR Sbjct: 365 KDYSANKMILNNINRVLPATQQALEMGLVGKALDEEIRRRAAYGADLSISLEPLPDPDNR 424 Query: 418 LTLS-AKKDWLGLPRPSIHYDVGDYTRKSAEQYSLPIGRKIAEAMGATDIKVSPAFAQSK 476 LTLS +KD GLP P IHYDVGDY RK AE + I + A + K++ + + Sbjct: 425 LTLSKTRKDAHGLPCPDIHYDVGDYVRKGAEAAHKQL-EHIGQLFEADEFKITTSLNANN 483 Query: 477 HIMGGTIMGLDAANSVVDPDCRAHDHDNLFLPGGGAMPSTACGNSTLSMAALGLKAADAI 536 HIMGGTIMG + +SVVD +CR +DH NL+LPGGGA+PS + NSTL+MAALGLKAAD + Sbjct: 484 HIMGGTIMGSNPQDSVVDGNCRTYDHANLWLPGGGAIPSASVVNSTLTMAALGLKAADDM 543 Query: 537 VRQL 540 R L Sbjct: 544 ARLL 547