BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4880.p (273 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777143.1| transmembrane dehydrogenase small subunit ox... 283 1e-74 ref|YP_004476388.1| transmembrane dehydrogenase small subunit ox... 174 2e-41 ref|YP_004118236.1| hypothetical protein Pat9b_5524 [Pantoea sp.... 169 6e-40 ref|YP_002546117.1| hypothetical protein Arad_4479 [Agrobacteriu... 128 9e-28 ref|ZP_06834173.1| hypothetical protein GXY_07150 [Gluconacetoba... 92 1e-16 >ref|YP_003777143.1| transmembrane dehydrogenase small subunit oxidoreductase [Herbaspirillum seropedicae SmR1] gb|ADJ65235.1| transmembrane dehydrogenase (small subunit) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 181 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 151/181 (83%), Positives = 159/181 (87%) Query: 93 MPTPPMNRFPRQVTMSRRSLLLTGVSLLGSYVALSSLPSWAIPQPDSPQLAPFMRLSALL 152 M PM R VTMSRRSL+LTGVS+LGSYVALSSLPSWAIP DSPQLAPFMRLS LL Sbjct: 1 MQDSPMKRLSNNVTMSRRSLMLTGVSILGSYVALSSLPSWAIPAADSPQLAPFMRLSGLL 60 Query: 153 VNHRLNPAVGARMLEVAAREHADLDTLMRQLLAIAEQKQARKVEDFFADIPAGPQQTLAY 212 VNHRLNPA+GARMLEVAAREHA LD LM LLA+A+ KQARKVEDF+ADIPAGPQQ LA Sbjct: 61 VNHRLNPAIGARMLEVAAREHAGLDALMSTLLALAQSKQARKVEDFYADIPAGPQQALAQ 120 Query: 213 WIIFAWYTGCSSPKRNATVFTYEEALTYQTTLDVVAIPSYGISGPNRWRQVTVPLADMPR 272 WIIFAWYTGCSS KR+A VFTYEEALTYQTTLDVVAIPSYG+SGPNRW Q TVPLADMPR Sbjct: 121 WIIFAWYTGCSSAKRDAAVFTYEEALTYQTTLDVVAIPSYGLSGPNRWSQRTVPLADMPR 180 Query: 273 F 273 F Sbjct: 181 F 181 >ref|YP_004476388.1| transmembrane dehydrogenase small subunit oxidoreductase [Pseudomonas fulva 12-X] gb|AEF24294.1| transmembrane dehydrogenase small subunit oxidoreductase [Pseudomonas fulva 12-X] Length = 168 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 91/169 (53%), Positives = 121/169 (71%), Gaps = 1/169 (0%) Query: 105 VTMSRRSLLLTGVSLLGSYVALSSLPSWAIPQPDSPQLAPFMRLSALLVNHRLNPAVGAR 164 + +SRR LL T + + G A + LP+WA+ FMRLS LL+NH+L+ AVG R Sbjct: 1 MNLSRRQLLGT-LLVSGGCAAFAGLPAWALSAESPAPYTRFMRLSTLLINHQLSAAVGMR 59 Query: 165 MLEVAAREHADLDTLMRQLLAIAEQKQARKVEDFFADIPAGPQQTLAYWIIFAWYTGCSS 224 + + A +++ L +M +++AIAEQ+QA VEDFFADIP G + LAYW+IFAWY+G SS Sbjct: 60 IADAALQKYPQLTDMMNRIIAIAEQRQANMVEDFFADIPEGELRELAYWVIFAWYSGVSS 119 Query: 225 PKRNATVFTYEEALTYQTTLDVVAIPSYGISGPNRWRQVTVPLADMPRF 273 P +A +FTYEEALT++TT DVVAIPSYG+S PN W QVTV L+ +PRF Sbjct: 120 PAADAQLFTYEEALTFKTTADVVAIPSYGLSAPNGWSQVTVALSPLPRF 168 >ref|YP_004118236.1| hypothetical protein Pat9b_5524 [Pantoea sp. At-9b] gb|ADU71680.1| conserved hypothetical protein [Pantoea sp. At-9b] Length = 199 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 89/170 (52%), Positives = 117/170 (68%), Gaps = 1/170 (0%) Query: 104 QVTMSRRSLLLTGVSLLGSYVALSSLPSWAIPQPDSPQLAPFMRLSALLVNHRLNPAVGA 163 ++ +SRR +LL+G ++ S + S+LPS+A+ QP SP APFM++S LLVNH+L+ AVG Sbjct: 31 KIQLSRRKVLLSGAVIIASGLVTSALPSFALAQP-SPGFAPFMQISRLLVNHQLDDAVGQ 89 Query: 164 RMLEVAAREHADLDTLMRQLLAIAEQKQARKVEDFFADIPAGPQQTLAYWIIFAWYTGCS 223 RML + E L + QLLAIA A KVEDFF IP G Q LA+ IIF WYTG Sbjct: 90 RMLALLDSEEQGLLDNINQLLAIARAHNAFKVEDFFPAIPQGKLQDLAHKIIFGWYTGSL 149 Query: 224 SPKRNATVFTYEEALTYQTTLDVVAIPSYGISGPNRWRQVTVPLADMPRF 273 +P R+A F YE+ALT+ TTLDV+ IPSYGISGPN W++ P+ +P+F Sbjct: 150 APTRSAKTFAYEQALTWHTTLDVITIPSYGISGPNNWQRANTPVLPVPQF 199 >ref|YP_002546117.1| hypothetical protein Arad_4479 [Agrobacterium radiobacter K84] gb|ACM28184.1| hypothetical protein Arad_4479 [Agrobacterium radiobacter K84] Length = 183 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 71/181 (39%), Positives = 99/181 (54%) Query: 93 MPTPPMNRFPRQVTMSRRSLLLTGVSLLGSYVALSSLPSWAIPQPDSPQLAPFMRLSALL 152 M P + P + ++RR L++ G G + + + + + FM +S+LL Sbjct: 3 MTDPSRDDCPEEFNLTRRKLMVGGALFAGGMLLAPEISAQTLGAVAPEVSSNFMDVSSLL 62 Query: 153 VNHRLNPAVGARMLEVAAREHADLDTLMRQLLAIAEQKQARKVEDFFADIPAGPQQTLAY 212 ++H L+P VGARM R + ++ + ++ IA++K AR VEDFFADIP G + A Sbjct: 63 IDHHLDPEVGARMAAAMLRINPEIAQDIGAIIDIAKKKNARIVEDFFADIPEGRVKDTAL 122 Query: 213 WIIFAWYTGCSSPKRNATVFTYEEALTYQTTLDVVAIPSYGISGPNRWRQVTVPLADMPR 272 II AWYTG NA VF +E AL YQ T DV+ IP+Y ISGPN W L DMP Sbjct: 123 AIISAWYTGVVENSANAEVFAFETALMYQPTHDVMTIPTYAISGPNGWNAEAPALGDMPT 182 Query: 273 F 273 F Sbjct: 183 F 183 >ref|ZP_06834173.1| hypothetical protein GXY_07150 [Gluconacetobacter hansenii ATCC 23769] gb|EFG84686.1| hypothetical protein GXY_07150 [Gluconacetobacter hansenii ATCC 23769] Length = 177 Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 62/181 (34%), Positives = 87/181 (48%), Gaps = 9/181 (4%) Query: 98 MNRFPRQVTMSRRSLLLTGVSLLGSYVALSSLPSWA-----IPQPDSPQLAPFMRLSALL 152 M F ++ ++RRSLLL G+S L + + + P A I +PDS + FM +S LL Sbjct: 1 MTSFRKEFKINRRSLLL-GMSALAA-ASFTQFPGLAASNGHIHEPDS--IVQFMLVSKLL 56 Query: 153 VNHRLNPAVGARMLEVAAREHADLDTLMRQLLAIAEQKQARKVEDFFADIPAGPQQTLAY 212 V H L+P VG ++ + D + L + VE + + A Sbjct: 57 VPHELDPFVGHKIHNALSDAEEGFDNTVTALQDFIMKNAVVDVEHLMPALTDAALKNSAL 116 Query: 213 WIIFAWYTGCSSPKRNATVFTYEEALTYQTTLDVVAIPSYGISGPNRWRQVTVPLADMPR 272 II AWY+G K V +EEAL ++ T DV+ IPSY S PN W VPL +MP Sbjct: 117 KIISAWYSGVVHGKSGDRVVAFEEALMFKVTNDVMTIPSYAKSAPNAWDATAVPLLNMPS 176 Query: 273 F 273 F Sbjct: 177 F 177