BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4879.p (349 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777141.1| methyl-accepting chemotaxis I protein [Herba... 460 e-127 ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I ... 218 1e-54 ref|YP_003773827.1| methyl-accepting chemotaxis sensory transduc... 208 1e-51 ref|YP_004751579.1| methyl-accepting chemotaxis sensory transduc... 196 4e-48 ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herba... 192 8e-47 >ref|YP_003777141.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] gb|ADJ65233.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 266/306 (86%), Positives = 280/306 (91%) Query: 2 MGWFKNLKIARKLQLAFLAVLVLMAVLGIFSISQLAKVKNASSEISRDWMPAQKKLGDIK 61 MGWFKNLKIARKLQLAFLAVLVLMA+LGIFSISQLAKVKNASSEIS DWMPAQKKLGD+K Sbjct: 1 MGWFKNLKIARKLQLAFLAVLVLMAILGIFSISQLAKVKNASSEISTDWMPAQKKLGDLK 60 Query: 62 LYFVRLRGTESQLAIYDGDVEAMNGLVSRSQAILTGLDKTMKDYAATLDTPQEREIYPKV 121 LYFVRLRGTESQLAIYDGDVEAMNGLVSRSQAILTGLDKTMKDY A+LD ERE+Y KV Sbjct: 61 LYFVRLRGTESQLAIYDGDVEAMNGLVSRSQAILTGLDKTMKDYEASLDNVPERELYTKV 120 Query: 122 AAQIAEFLAEHKKIVAAFLAKDNAQGRDLFLGYSNKLYPQILADLEKLIKINQEGGDAAT 181 A QI EFLAEHKKIVAAFLA+DN QGRDLFLGYSNKLYPQIL DLEKLIKINQ+GG+AAT Sbjct: 121 AGQIGEFLAEHKKIVAAFLARDNPQGRDLFLGYSNKLYPQILGDLEKLIKINQDGGNAAT 180 Query: 182 AGADDTFSQSRVGVLGLLIAALAIGMGLAITMGRIIAAPLQDAVGIARRVAGGDLGAEIS 241 A ADDTFS+SRVGVL LL AALAIGMGLA+ + RIIA PLQDAV IARRVA GDLGA+I Sbjct: 181 ADADDTFSKSRVGVLVLLAAALAIGMGLALYVARIIARPLQDAVDIARRVAEGDLGAQIQ 240 Query: 242 VHSKDETGQLLQALQTMNEGLRQVVGQVRNGTDSIATASTEIATGNLDLSRRTEQQATAS 301 V SKDETGQL+QAL TMNEGLR+VVGQVR+GTDSIATASTEIATGNLDLSRRTEQQATA Sbjct: 241 VQSKDETGQLMQALDTMNEGLRKVVGQVRSGTDSIATASTEIATGNLDLSRRTEQQATAL 300 Query: 302 RARARA 307 A A Sbjct: 301 EETASA 306 >ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] gb|ADJ64222.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 130/306 (42%), Positives = 190/306 (62%), Gaps = 1/306 (0%) Query: 2 MGWFKNLKIARKLQLAFLAVLVLMAVLGIFSISQLAKVKNASSEISRDWMPAQKKLGDIK 61 M WF +L+I+RKL FL V+ ++A LG+FSI QL +V +AS+EIS +W+P+ + L ++ Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQ 60 Query: 62 LYFVRLRGTESQLAIYDGDVEAMNGLVSRSQAILTGLDKTMKDYAATLDTPQEREIYPKV 121 L RLR E Q I D + + Q + L +Y + P+E+ IYP+V Sbjct: 61 LAMSRLRSFELQ-HILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEV 119 Query: 122 AAQIAEFLAEHKKIVAAFLAKDNAQGRDLFLGYSNKLYPQILADLEKLIKINQEGGDAAT 181 IA F++EH KI+A + + R+L G S K Y L ++KL +N +G D + Sbjct: 120 EKLIATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISN 179 Query: 182 AGADDTFSQSRVGVLGLLIAALAIGMGLAITMGRIIAAPLQDAVGIARRVAGGDLGAEIS 241 AD ++Q+R+ ++ + A + + M LA+ + R+IA PL++AV +A+RVAGGDL I Sbjct: 180 KQADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIE 239 Query: 242 VHSKDETGQLLQALQTMNEGLRQVVGQVRNGTDSIATASTEIATGNLDLSRRTEQQATAS 301 KDETGQLL AL++MN+ L +VGQVR GT +I TASTEIA+GNLDLS RTE+QA++ Sbjct: 240 PAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSL 299 Query: 302 RARARA 307 A A Sbjct: 300 EETASA 305 >ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] gb|ADJ61919.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 132/306 (43%), Positives = 195/306 (63%) Query: 2 MGWFKNLKIARKLQLAFLAVLVLMAVLGIFSISQLAKVKNASSEISRDWMPAQKKLGDIK 61 M WF N +IA KL LAF VL+L LGIFSI QL KV A++E++ +W+P+ + L D+K Sbjct: 1 MNWFYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMK 60 Query: 62 LYFVRLRGTESQLAIYDGDVEAMNGLVSRSQAILTGLDKTMKDYAATLDTPQEREIYPKV 121 + R+R ++QLA+YDGD + + ++ L L + K Y + P E+ ++P V Sbjct: 61 VALSRVRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGV 120 Query: 122 AAQIAEFLAEHKKIVAAFLAKDNAQGRDLFLGYSNKLYPQILADLEKLIKINQEGGDAAT 181 A+I +F+A H +AA A + + L LG + + Y +L DL+KL ++N +G +T Sbjct: 121 NARIDKFIALHGDTLAAVRAGKLDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSVQST 180 Query: 182 AGADDTFSQSRVGVLGLLIAALAIGMGLAITMGRIIAAPLQDAVGIARRVAGGDLGAEIS 241 A+ T+ Q++V V+ +LI AL G+ LA+ + R+IA PL+ A A +A GDL A+I+ Sbjct: 181 RSAETTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADIT 240 Query: 242 VHSKDETGQLLQALQTMNEGLRQVVGQVRNGTDSIATASTEIATGNLDLSRRTEQQATAS 301 S DETGQL AL MN LR++V QVR+GTD+IATAS +I++GNLDLS RTE+QA++ Sbjct: 241 ARSDDETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASSL 300 Query: 302 RARARA 307 A A Sbjct: 301 EETASA 306 >ref|YP_004751579.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] gb|AEK60756.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] Length = 635 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 123/299 (41%), Positives = 185/299 (61%), Gaps = 2/299 (0%) Query: 2 MGWFKNLKIARKLQLAFLAVLVLMAVLGIFSISQLAKVKNASSEISRDWMPAQKKLGDIK 61 M WF NLKIA KL L+F +L+L VLG+ SI+QL +V ++EI+ +W+P+ + L +K Sbjct: 96 MTWFYNLKIATKLLLSFALILMLTLVLGVASITQLGQVNATTNEINSNWLPSVRMLLTLK 155 Query: 62 LYFVRLRGTESQLAIYDGDVEAMNGLVSRSQAILTGLDKTMKDYAATLDTPQEREIYPKV 121 LR E Q + D M+ I + KT+ +YA L + +ER +Y ++ Sbjct: 156 SNLALLRNVEMQ-HVMSNDAADMDKSAQFIGDIRGDVQKTLSEYAP-LVSEEERAVYDQL 213 Query: 122 AAQIAEFLAEHKKIVAAFLAKDNAQGRDLFLGYSNKLYPQILADLEKLIKINQEGGDAAT 181 +I +L KKIV A G S ++ +E+L+KIN +G A+ Sbjct: 214 KDKIPRYLEMDKKIVDISRAFRKDDAIKEIRGDSLAAIVELDKQVERLVKINSDGSAASA 273 Query: 182 AGADDTFSQSRVGVLGLLIAALAIGMGLAITMGRIIAAPLQDAVGIARRVAGGDLGAEIS 241 + ++++R ++GL+IA L +G LA+ + R++A PL+ AV +ARRVAGGDL A+I Sbjct: 274 KDGEAIYNKARFWMIGLMIAMLLLGFALALWIARVVAQPLEFAVDVARRVAGGDLTADIE 333 Query: 242 VHSKDETGQLLQALQTMNEGLRQVVGQVRNGTDSIATASTEIATGNLDLSRRTEQQATA 300 V S DETGQL+QAL+ MN L+++VG+VR+GTD+IATAS +IA GN +LS+RTEQQA++ Sbjct: 334 VRSSDETGQLMQALKDMNHSLQKIVGEVRSGTDTIATASGQIAAGNQNLSQRTEQQASS 392 >ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] gb|ADJ66081.1| methyl-accepting chemotaxis protein I, serine sensor receptor protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats. Identities = 118/309 (38%), Positives = 183/309 (59%), Gaps = 7/309 (2%) Query: 2 MGWFKNLKIARKLQLAFLAVLVLMAVLGIFSISQLAKVKNASSEISRDWMPAQKKLGDIK 61 M WF NLKIA+KL ++F AV+VL +LG+F+I +L V AS++++ +W+P K I+ Sbjct: 1 MTWFNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 Query: 62 LYFVRLRGTESQLAIYDGDVEAMNGLVSRSQAILTGLD---KTMKDYAATLDTPQEREIY 118 R+R +E Q+ E + L +AI + LD K Y A + +E+ +Y Sbjct: 61 ASLPRMRISELQMVTAATPAEREDAL----KAIKSRLDILAKQRAAYEAQISEAEEKVLY 116 Query: 119 PKVAAQIAEFLAEHKKIVAAFLAKDNAQGRDLFLGYSNKLYPQILADLEKLIKINQEGGD 178 K + A +L K++ + R LF G SNK + ++ +++++IK+N G Sbjct: 117 EKFSKSFATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVNDAGSK 176 Query: 179 AATAGADDTFSQSRVGVLGLLIAALAIGMGLAITMGRIIAAPLQDAVGIARRVAGGDLGA 238 + A+ + + + ++GLL A + I +GLA+ + R ++ PL +AV +A RVA GDL Sbjct: 177 RSDDMAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTM 236 Query: 239 EISVHSKDETGQLLQALQTMNEGLRQVVGQVRNGTDSIATASTEIATGNLDLSRRTEQQA 298 +I S DETG L+ +L+ MN+ L+Q+VG+VR GTD+I TAS EIATGNLDLS RTE+QA Sbjct: 237 DIRATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQA 296 Query: 299 TASRARARA 307 + A A Sbjct: 297 GSLEETASA 305