BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4876.p         (121 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775615.1| cupin superfamily protein [Herbaspirillum se...   214   3e-54
ref|YP_283271.1| hypothetical protein Daro_0042 [Dechloromonas a...   160   8e-38
ref|YP_586144.1| hypothetical protein Rmet_4007 [Cupriavidus met...   150   8e-35
ref|YP_002795930.1| enzyme of the cupin superfamily [Laribacter ...   144   3e-33
ref|YP_295044.1| hypothetical protein Reut_A0821 [Ralstonia eutr...   142   1e-32

>ref|YP_003775615.1| cupin superfamily protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63707.1| cupin superfamily enzyme protein [Herbaspirillum seropedicae SmR1]
          Length = 134

 Score =  214 bits (546), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 99/114 (86%), Positives = 110/114 (96%)

Query: 3   AITQFRLGAPTPEYDHPREDRRLEGNPLRTTWNHFTNASGEMNAGIWACEKGSWRIAFSA 62
           AITQFRL +PTPE+DHPRE+RRL+GNPLRTTWNHFT+ASGE++AGIWACE+GSWRIAF+ 
Sbjct: 6   AITQFRLSSPTPEFDHPREERRLDGNPLRTTWNHFTSASGEVSAGIWACERGSWRIAFAQ 65

Query: 63  NKDEYFCVLEGRCRVIDEQGHAAEAGPGDAMVIPAGFKGVFEVLEPVRKHYVIV 116
           NKDEYF VLEGRCRVIDEQGHAAEAGPGDAMVIPAGFKGVFEV+E +RKHYVIV
Sbjct: 66  NKDEYFYVLEGRCRVIDEQGHAAEAGPGDAMVIPAGFKGVFEVVEALRKHYVIV 119


>ref|YP_283271.1| hypothetical protein Daro_0042 [Dechloromonas aromatica RCB]
 gb|AAZ44801.1| Protein of unknown function DUF861 [Dechloromonas aromatica RCB]
          Length = 120

 Score =  160 bits (404), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 69/118 (58%), Positives = 87/118 (73%)

Query: 1   MTAITQFRLGAPTPEYDHPREDRRLEGNPLRTTWNHFTNASGEMNAGIWACEKGSWRIAF 60
           M  +T F    P P YD PR DR ++GNPLRTTW HF   +G+++AGIW+CE G+W IAF
Sbjct: 1   MPKLTAFSTTTPPPSYDRPRPDRLVKGNPLRTTWEHFLTENGDLSAGIWSCEPGAWNIAF 60

Query: 61  SANKDEYFCVLEGRCRVIDEQGHAAEAGPGDAMVIPAGFKGVFEVLEPVRKHYVIVER 118
           +  KDE+FC++EGR R+ D    A+E GPGDA +IPAGF G FEVLE VRKHYV++ER
Sbjct: 61  APGKDEFFCIIEGRLRITDSDQQASEFGPGDACIIPAGFTGTFEVLEAVRKHYVLIER 118


>ref|YP_586144.1| hypothetical protein Rmet_4007 [Cupriavidus metallidurans CH34]
 gb|ABF10875.1| conserved hypothetical protein [Cupriavidus metallidurans CH34]
          Length = 128

 Score =  150 bits (378), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 69/120 (57%), Positives = 89/120 (74%), Gaps = 1/120 (0%)

Query: 1   MTAITQFRLGAPTPEYDHPREDRRLEGNPLRTTWNHFTNASGEMNAGIWACEKGSWRIAF 60
           +  +T F LG P P +D+PR DR ++GNP RTTW H++   G+ + GIWACE G+WRIAF
Sbjct: 9   LPTLTDF-LGRPAPSHDNPRPDRLVKGNPDRTTWTHYSATQGDFDCGIWACEPGAWRIAF 67

Query: 61  SANKDEYFCVLEGRCRVIDEQGHAAEAGPGDAMVIPAGFKGVFEVLEPVRKHYVIVERAA 120
            A K+E+F V+ GR R+    G A E GPGDA VIPAGF+GVFEVLEPVRKH+V+++R A
Sbjct: 68  PAGKEEFFHVISGRLRITSLAGEAREFGPGDACVIPAGFEGVFEVLEPVRKHFVVIDRNA 127


>ref|YP_002795930.1| enzyme of the cupin superfamily [Laribacter hongkongensis HLHK9]
 gb|ACO74921.1| Predicted enzyme of the cupin superfamily [Laribacter hongkongensis
           HLHK9]
          Length = 125

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 69/116 (59%), Positives = 83/116 (71%)

Query: 3   AITQFRLGAPTPEYDHPREDRRLEGNPLRTTWNHFTNASGEMNAGIWACEKGSWRIAFSA 62
           +I  F    P P YD PREDRR+ G P RTTWNH+ +  G ++AG+WACE G WRIAF+A
Sbjct: 4   SICLFSYVCPIPVYDEPREDRRVSGQPRRTTWNHYDSDDGVVSAGVWACETGRWRIAFAA 63

Query: 63  NKDEYFCVLEGRCRVIDEQGHAAEAGPGDAMVIPAGFKGVFEVLEPVRKHYVIVER 118
           +K+E+F VLEGR R+ D  G A E   GDA VIPAGF+G FEV EPVRK YV+V R
Sbjct: 64  DKEEFFAVLEGRVRLWDADGVAVEVRAGDAAVIPAGFRGEFEVCEPVRKFYVVVSR 119


>ref|YP_295044.1| hypothetical protein Reut_A0821 [Ralstonia eutropha JMP134]
 gb|AAZ60200.1| Protein of unknown function DUF861 [Ralstonia eutropha JMP134]
          Length = 149

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/117 (55%), Positives = 86/117 (73%)

Query: 4   ITQFRLGAPTPEYDHPREDRRLEGNPLRTTWNHFTNASGEMNAGIWACEKGSWRIAFSAN 63
           +  F+  AP P +D PR DR + GNP RTTW H++   G+ + GIWACE G+WRIAF A 
Sbjct: 29  LIDFQANAPAPTHDRPRPDRLVAGNPDRTTWTHYSAQHGDFDCGIWACEPGAWRIAFPAG 88

Query: 64  KDEYFCVLEGRCRVIDEQGHAAEAGPGDAMVIPAGFKGVFEVLEPVRKHYVIVERAA 120
           K+E+F V+ GR R+ D+ G A+E GPGDA VIPAGF G+FEVLE VRK++V+++R A
Sbjct: 89  KEEFFHVISGRIRISDDAGAASEFGPGDACVIPAGFTGLFEVLERVRKYFVVIDREA 145