BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4872.p         (84 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_785832.1| phage protein [Bordetella avium 197N] >gi|11542...   100   7e-20
emb|CCA85658.1| conserved hypothetical protein, plasmid stabiliz...    96   2e-18
ref|YP_003750867.1| hypothetical protein RPSI07_0167 [Ralstonia ...    95   5e-18
ref|ZP_00944460.1| Hypothetical Protein RRSL_02801 [Ralstonia so...    92   3e-17
ref|YP_004695304.1| plasmid stabilization system [Nitrosomonas s...    92   4e-17

>ref|YP_785832.1| phage protein [Bordetella avium 197N]
 emb|CAJ48919.1| putative phage protein [Bordetella avium 197N]
          Length = 84

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 51/84 (60%), Positives = 60/84 (71%)

Query: 1  MNVITWTPRAAKQLRKLDAHIRAPIYSAIQELVEMPGCQNVKRLMNHEYGYRLRVGQYRV 60
          MN I WT +A KQLRKLD   +  I   + EL  MP C+N+K L  HEYGYRLRVG YRV
Sbjct: 1  MNTIHWTLKATKQLRKLDRQHQQAIRDGVDELENMPACKNIKALTKHEYGYRLRVGNYRV 60

Query: 61 LFDWTVEIRIVEIHEVRKRDERTY 84
          +F+W   I+IVEI E+RKRDERTY
Sbjct: 61 MFNWDGGIKIVEIEEIRKRDERTY 84


>emb|CCA85658.1| conserved hypothetical protein, plasmid stabilization system
          domain [Ralstonia syzygii R24]
          Length = 86

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/84 (64%), Positives = 59/84 (70%)

Query: 1  MNVITWTPRAAKQLRKLDAHIRAPIYSAIQELVEMPGCQNVKRLMNHEYGYRLRVGQYRV 60
          MN I WT RAA+QLRKLD   +  +  A+ +L  MP CQ VK L  H YGYRLRVG YRV
Sbjct: 1  MNAIHWTVRAARQLRKLDPQHQRTLVLAVGQLEAMPHCQQVKALREHRYGYRLRVGDYRV 60

Query: 61 LFDWTVEIRIVEIHEVRKRDERTY 84
          LFDW   IRIVEI EV KRDERTY
Sbjct: 61 LFDWDGGIRIVEIQEVSKRDERTY 84


>ref|YP_003750867.1| hypothetical protein RPSI07_0167 [Ralstonia solanacearum PSI07]
 emb|CBJ49545.1| conserved protein of unknown function, plasmid stabilization
          system domain [Ralstonia solanacearum PSI07]
 emb|CCA80937.1| conserved hypothetical protein, plasmid stabilization system
          domain [blood disease bacterium R229]
          Length = 90

 Score = 94.7 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 53/84 (63%), Positives = 58/84 (69%)

Query: 1  MNVITWTPRAAKQLRKLDAHIRAPIYSAIQELVEMPGCQNVKRLMNHEYGYRLRVGQYRV 60
          +N I WT RAA+QLRKLD   +  +  A+  L  MP CQ VK L  H YGYRLRVG YRV
Sbjct: 5  VNAIHWTARAARQLRKLDRQHQHTLVQAVGLLEAMPHCQQVKALREHRYGYRLRVGDYRV 64

Query: 61 LFDWTVEIRIVEIHEVRKRDERTY 84
          LFDW   IRIVEI EV KRDERTY
Sbjct: 65 LFDWDGGIRIVEIQEVSKRDERTY 88


>ref|ZP_00944460.1| Hypothetical Protein RRSL_02801 [Ralstonia solanacearum UW551]
 ref|YP_002261155.1| cytotoxic translational repressor of toxin-antitoxin stability
          system protein [Ralstonia solanacearum IPO1609]
 gb|EAP73017.1| Hypothetical Protein RRSL_02801 [Ralstonia solanacearum UW551]
 emb|CAQ63100.1| cytotoxic translational repressor of toxin-antitoxin stability
          system protein [Ralstonia solanacearum IPO1609]
          Length = 90

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/84 (60%), Positives = 58/84 (69%)

Query: 1  MNVITWTPRAAKQLRKLDAHIRAPIYSAIQELVEMPGCQNVKRLMNHEYGYRLRVGQYRV 60
          +N + WT RAA+QLRKLD   +  +  A+ +L  MP CQ VK L  H  GYRLRVG YRV
Sbjct: 5  INAVHWTARAARQLRKLDRQHQRMLVQAVGQLEAMPHCQQVKALREHRCGYRLRVGDYRV 64

Query: 61 LFDWTVEIRIVEIHEVRKRDERTY 84
          LFDW   IRIVEI EV KRDERTY
Sbjct: 65 LFDWDGGIRIVEIQEVSKRDERTY 88


>ref|YP_004695304.1| plasmid stabilization system [Nitrosomonas sp. Is79A3]
 gb|AEJ01905.1| plasmid stabilization system [Nitrosomonas sp. Is79A3]
          Length = 85

 Score = 91.7 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/85 (50%), Positives = 59/85 (69%), Gaps = 1/85 (1%)

Query: 1  MNVITWTPRAAKQLRKLDAH-IRAPIYSAIQELVEMPGCQNVKRLMNHEYGYRLRVGQYR 59
          MN I W P+A KQ+ K+ A  +R  I++ +Q L + P CQ VK+L NH Y YRLRVG YR
Sbjct: 1  MNDIDWKPKALKQVEKIKAAAVRKRIFTEVQSLADFPDCQGVKKLANHTYSYRLRVGDYR 60

Query: 60 VLFDWTVEIRIVEIHEVRKRDERTY 84
          V F++   + +++I EV+KRDERTY
Sbjct: 61 VFFEFDGSVHVIDIEEVKKRDERTY 85