BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4871.p (288 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775876.1| hypothetical protein Hsero_2469 [Herbaspiril... 505 e-141 ref|YP_001524751.1| hypothetical protein AZC_1835 [Azorhizobium ... 211 9e-53 ref|YP_001418788.1| hypothetical protein Xaut_3907 [Xanthobacter... 194 1e-47 ref|YP_002501205.1| hypothetical protein Mnod_6077 [Methylobacte... 187 2e-45 ref|YP_001240334.1| hypothetical protein BBta_4388 [Bradyrhizobi... 181 1e-43 >ref|YP_003775876.1| hypothetical protein Hsero_2469 [Herbaspirillum seropedicae SmR1] gb|ADJ63968.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 288 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 247/287 (86%), Positives = 266/287 (92%) Query: 1 MSAAPAFARTVRHPGPPDPQRIVTLSGPAMHLDFTLEAGMNLRDAISIPLARAGLDGGTV 60 M AAP F+RTVRHPG PDPQRIV+L+GPAM LDFTLEAG NLRDAISIPL+RAGL+GGTV Sbjct: 1 MQAAPRFSRTVRHPGAPDPQRIVSLAGPAMQLDFTLEAGRNLRDAISIPLSRAGLEGGTV 60 Query: 61 RFANLPVSPLHFLMPALAVDDQHAAFYSAPQAMEEGTLIDYACATYGRKDGEPFVHCHAV 120 RF L ++ LHFLMPALAVDDQHAAFYSAP AMEEGTLIDYACATYGRKDGEPFVHCHAV Sbjct: 61 RFGQLAIAELHFLMPALAVDDQHAAFYSAPHAMEEGTLIDYACATYGRKDGEPFVHCHAV 120 Query: 121 WRDRQGQRQGGHLMMEKTLVGADTPAQAWGLHDATMATRYDPETNFTLFYPTRLSDQPLA 180 WRDRQGQRQGGHLMMEKTLVGADTPAQAWGLHDATMATRYDPETNFTLFYPTRL++Q + Sbjct: 121 WRDRQGQRQGGHLMMEKTLVGADTPAQAWGLHDATMATRYDPETNFTLFYPTRLAEQTVT 180 Query: 181 ANGKRVVLARIRPDQDLTIAVEQVCAENVMRDAVVRGSVGSIIGAEFEDGRVLEDRATEI 240 + GKRVVLARIRPDQDLT+AVE CAE+ M +A+VRGSVGSIIGAEF+DGRVLEDRATEI Sbjct: 181 STGKRVVLARIRPDQDLTMAVEAACAEHGMANAIVRGSVGSIIGAEFDDGRVLEDRATEI 240 Query: 241 LIRSGEVRDGVGRLDIGLINPQGQVYEGVLARGCNPVLICFELVLEE 287 LIR+GEVR G RL+IGLINPQGQV EGVLARGCNPVLICFELVL+E Sbjct: 241 LIRAGEVRQGRARLEIGLINPQGQVCEGVLARGCNPVLICFELVLQE 287 >ref|YP_001524751.1| hypothetical protein AZC_1835 [Azorhizobium caulinodans ORS 571] dbj|BAF87833.1| hypothetical protein AZC_1835 [Azorhizobium caulinodans ORS 571] Length = 330 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 126/287 (43%), Positives = 170/287 (59%), Gaps = 7/287 (2%) Query: 5 PAFARTVRHPGPPDPQRIVTLSGPAMHLDFTLEAGMNLRDAISIPLARAGLDGGTVRFAN 64 P R ++ PGP +R ++ +D TLE G++L +AI+ PL AG GG+V F + Sbjct: 42 PVSLRALKQPGPAAARRFESVCTGLEEMDITLEPGLSLNEAIARPLLAAGWTGGSVCFTD 101 Query: 65 LPVSPLHFLMPALAVDDQHAAFYSAPQAMEEGTLIDYACATYGRKDGEPFVHCHAVWRDR 124 ++P HF+MPA A D+ HAA+YS + + LI+ A T+G +D PF HCHA WR Sbjct: 102 GWLAPFHFVMPAPAPDETHAAWYSQTHSPDGEALIEQANITFGFRDRGPFTHCHATWRTA 161 Query: 125 QGQRQGGHLMMEKTLVGADTPAQAWGLHDATMATRYDPETNFTLFYPTRLSDQPLAANGK 184 G R GGH++ +T V A+A+G A +A R D ETNFTLF P SD P +G+ Sbjct: 162 DGVRGGGHILPLETQVSRPITARAFGSRTARIAARPDAETNFTLFTPE--SDAPAPESGR 219 Query: 185 RVVLARIRPDQDLTIAVEQVCAENVMRDAVVRGSVGSIIGAEFEDGRVLEDRATEILIRS 244 R++LAR+RP+ ++ A+ VC + + A VRGS+GSIIGAEFEDG L D ATE LI Sbjct: 220 RLILARLRPNVEIGAALADVCRAHGVSRARVRGSLGSIIGAEFEDGPDLADYATEFLILD 279 Query: 245 G-----EVRDGVGRLDIGLINPQGQVYEGVLARGCNPVLICFELVLE 286 G E D RL I ++ G + EG LA+G NPV I E LE Sbjct: 280 GTVAPDETGDLRTRLKIAIVGLSGTLREGWLAQGRNPVCITCEFALE 326 >ref|YP_001418788.1| hypothetical protein Xaut_3907 [Xanthobacter autotrophicus Py2] gb|ABS69131.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2] Length = 290 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 114/284 (40%), Positives = 160/284 (56%), Gaps = 7/284 (2%) Query: 9 RTVRHPGPPDPQRIVTLSGPAMHLDFTLEAGMNLRDAISIPLARAGLDGGTVRFANLPVS 68 R + PGP +RI + G LDFTLE G+ L AI+ PL AG+ V ++ Sbjct: 5 RRIAQPGPAPRERIESAVGRLQVLDFTLEPGLTLNVAITGPLIAAGMGAAQVEISDGGFG 64 Query: 69 PLHFLMPALAVDDQHAAFYSAPQAMEEGTLIDYACATYGRKDGEPFVHCHAVWRDRQGQR 128 P ++MPA + D HAA+YSAP T ++ T+GRKDG PF+HCHA W + G R Sbjct: 65 PFTYVMPAASSDATHAAWYSAPFTPAGETRLERGNVTFGRKDGAPFIHCHAFWIEPDGSR 124 Query: 129 QGGHLMMEKTLVGADTPAQAWGLHDATMATRYDPETNFTLFYPTRLSDQPLAANGKRVVL 188 GGH+M +T+V A A+A+ + +D ETNF LF P + A G R+ Sbjct: 125 HGGHIMPHQTVVAAPIRARAYAAAEVETTADFDTETNFPLFTPH--AHIAPAEGGPRIAF 182 Query: 189 ARIRPDQDLTIAVEQVCAENVMRDAVVRGSVGSIIGAEFEDGRVLEDRATEILIRSGEVR 248 AR+RP+ ++ AVE++C + +RG VGS+IGA F D ++D ATE+ + SG V Sbjct: 183 ARVRPNVEIGAAVEELCRRHGFAGGHLRGGVGSLIGARFADAPTVDDYATEVFVTSGTVA 242 Query: 249 -DGVG----RLDIGLINPQGQVYEGVLARGCNPVLICFELVLEE 287 D G ++D+ L++ G + EG L G NPVLI FEL +EE Sbjct: 243 PDASGALAAQIDLALVSLTGAMAEGRLVPGANPVLITFELAVEE 286 >ref|YP_002501205.1| hypothetical protein Mnod_6077 [Methylobacterium nodulans ORS 2060] gb|ACL60902.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060] Length = 293 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 119/291 (40%), Positives = 165/291 (56%), Gaps = 10/291 (3%) Query: 1 MSAAPAFARTVRHPGPPDPQRIVTLSGPAMHLDFTLEAGMNLRDAISIPLARAGLDGGTV 60 M PA A + PGPP P+R + +GP + L L G L DA+ +PL AGL G V Sbjct: 6 MQTQPARA-LLAQPGPPRPERRIAAAGPLLRLAPDLTPGATLLDALGLPLRAAGLGGAVV 64 Query: 61 RFANLPVSPLHFLMPALAVDDQHAAFYSAPQAMEEGTLIDYACATYGRKDGEPFVHCHAV 120 P ++MPAL+ D +AA+YS T ++ A AT+G +DG PF+H H + Sbjct: 65 HLEGGAFEPFAYVMPALSTDPAYAAYYSETFRPAGETRLERASATFGERDGAPFLHVHGI 124 Query: 121 WRDRQGQRQGGHLMMEKTLVGADTPAQAWGLHDATMATRYDPETNFTLFYPTRLSDQPLA 180 W + GQR+ GHL+ + ++ AQAWG A D ETNF+LF P + P Sbjct: 125 WTEADGQRRAGHLLPGEVVIRTPPRAQAWGTAGAAWRVLPDAETNFSLFTPVAGAAPPPE 184 Query: 181 ANGKRVVLARIRPDQDLTIAVEQVCAENVMRDAVVRGSVGSIIGAEFEDGRVLEDRATEI 240 A +L +I+P+++L AVE CA +R A VRG +GSI+ F DGRV+ A+E+ Sbjct: 185 A---ACLLLKIQPNEELFAAVEGACANLGLRRARVRG-LGSIVQPAFADGRVVPTDASEV 240 Query: 241 LIRSGEVRDG-----VGRLDIGLINPQGQVYEGVLARGCNPVLICFELVLE 286 LIR G VR+G + LDI +++ G+++EGVLARG N V I FEL LE Sbjct: 241 LIREGCVREGPDGRPLAHLDIAVVDVAGRIHEGVLARGRNSVCITFELCLE 291 >ref|YP_001240334.1| hypothetical protein BBta_4388 [Bradyrhizobium sp. BTAi1] gb|ABQ36428.1| hypothetical protein BBta_4388 [Bradyrhizobium sp. BTAi1] Length = 285 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 109/283 (38%), Positives = 151/283 (53%), Gaps = 7/283 (2%) Query: 9 RTVRHPGPPDPQRIVTLSGPAMHLDFTLEAGMNLRDAISIPLARAGLDGGTVRFANLPVS 68 R+++ PG P RI + T+E G+ L +A A G GG + + + Sbjct: 2 RSIKQPGAPVADRIQWVEARGRAFTLTMERGLPLLEAAHRGFAAQGFAGGVLDISAGALG 61 Query: 69 PLHFLMPALAVDDQHAAFYSAPQAMEEGTLIDYACATYGRKDGEPFVHCHAVWRDRQGQR 128 P ++MPAL+ HAAFYS T + A T G +DG PF HCHA+W + G+ Sbjct: 62 PFAYVMPALSKTPDHAAFYSETHRPSGVTQLSTATMTLGVRDGAPFFHCHALWMEEGGRN 121 Query: 129 QGGHLMMEKTLVGADTPAQAWGLHDATMATRYDPETNFTLFYPTRLSDQPLAANGKRVVL 188 GGH++ E+T+V +A+GL A A DPET F LF P ++ PLAA R Sbjct: 122 GGGHILPEETVVAEPFEVEAFGLDGAIFAAEPDPETGFKLFGP--VAAAPLAATTDRCAF 179 Query: 189 A-RIRPDQDLTIAVEQVCAENVMRDAVVRGSVGSIIGAEFEDGRVLEDRATEILIRSGEV 247 A R+RP+QD +E C +R+A +RG VGS IGA F G V+E ATE+ I +G + Sbjct: 180 ALRLRPNQDFAACLEAFCQAQGIREARIRGGVGSTIGARFASGEVVEPFATELTITAGVI 239 Query: 248 RDGV----GRLDIGLINPQGQVYEGVLARGCNPVLICFELVLE 286 G LD+ L++ G + +G L RG NPVL+ ELVLE Sbjct: 240 APGADGLEAVLDVALVDYTGALAQGRLVRGDNPVLMTMELVLE 282