BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4870.p         (122 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775877.1| chemotaxis response regulator CheY [Herbaspi...   209   1e-52
ref|YP_001353295.1| CheY chemotaxis protein [Janthinobacterium s...   186   1e-45
ref|YP_002912652.1| response regulator receiver protein [Burkhol...   179   1e-43
ref|YP_001859772.1| response regulator receiver protein [Burkhol...   175   2e-42
ref|YP_004231236.1| response regulator receiver protein [Burkhol...   174   4e-42

>ref|YP_003775877.1| chemotaxis response regulator CheY [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ63969.1| chemotaxis response regulator CheY protein [Herbaspirillum
           seropedicae SmR1]
          Length = 122

 Score =  209 bits (531), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 118/121 (97%), Positives = 120/121 (99%)

Query: 1   MAQILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLAKLKSDPAIKLVVSDVNMPNMD 60
           MAQILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGL+KLK DPAIKLVVSDVNMPNMD
Sbjct: 1   MAQILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLSKLKGDPAIKLVVSDVNMPNMD 60

Query: 61  GLTMAEKIRSELGNATVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLV 120
           GLTMAEKIRSELGNA+VNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLV
Sbjct: 61  GLTMAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLV 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>ref|YP_001353295.1| CheY chemotaxis protein [Janthinobacterium sp. Marseille]
 gb|ABR90849.1| CheY chemotaxis protein [Janthinobacterium sp. Marseille]
          Length = 121

 Score =  186 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 105/121 (86%), Positives = 114/121 (94%)

Query: 1   MAQILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLAKLKSDPAIKLVVSDVNMPNMD 60
           MA+ILVVDDS+TVR EVGDFLKKN LDV LAVDGRDGLAK+K D +IKLV+SDVNMPNMD
Sbjct: 1   MAKILVVDDSATVRNEVGDFLKKNDLDVVLAVDGRDGLAKMKGDSSIKLVISDVNMPNMD 60

Query: 61  GLTMAEKIRSELGNATVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLV 120
           GLTMAEKIRSELGN++VNIIMLTTENSP+MKERGKAAGIKGWIVKPFKG+AVL TFKKLV
Sbjct: 61  GLTMAEKIRSELGNSSVNIIMLTTENSPMMKERGKAAGIKGWIVKPFKGDAVLATFKKLV 120

Query: 121 G 121
            
Sbjct: 121 A 121


>ref|YP_002912652.1| response regulator receiver protein [Burkholderia glumae BGR1]
 gb|ACR29948.1| Response regulator receiver protein [Burkholderia glumae BGR1]
          Length = 121

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 96/119 (80%), Positives = 110/119 (92%)

Query: 1   MAQILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLAKLKSDPAIKLVVSDVNMPNMD 60
           MA+ILVVDDSSTVR EV  FL+KNGL+V  AVDG+DGLAKLK+ PAI+LVVSDVNMPNMD
Sbjct: 1   MAKILVVDDSSTVRDEVAGFLRKNGLEVETAVDGKDGLAKLKTSPAIRLVVSDVNMPNMD 60

Query: 61  GLTMAEKIRSELGNATVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKL 119
           GLTM EKIRSELGNA+VN++MLTTE+SP MKERGKAAG++GWIVKPF+GEAVL TF+KL
Sbjct: 61  GLTMVEKIRSELGNASVNVVMLTTESSPAMKERGKAAGVRGWIVKPFRGEAVLETFRKL 119


>ref|YP_001859772.1| response regulator receiver protein [Burkholderia phymatum STM815]
 gb|ACC72726.1| response regulator receiver protein [Burkholderia phymatum STM815]
          Length = 121

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 97/119 (81%), Positives = 108/119 (90%)

Query: 1   MAQILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLAKLKSDPAIKLVVSDVNMPNMD 60
           MA++LVVDDSSTVR EV  FL+KNGLDV  AVDG+DGLAKLK+ P I+LVVSDVNMPNMD
Sbjct: 1   MAKVLVVDDSSTVRDEVAGFLRKNGLDVDTAVDGKDGLAKLKASPGIRLVVSDVNMPNMD 60

Query: 61  GLTMAEKIRSELGNATVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKL 119
           GLTMAEKIR EL NA+VNIIMLTTE+SP MKERGKAAG+KGWIVKPFKG+AVL TF+KL
Sbjct: 61  GLTMAEKIRGELSNASVNIIMLTTESSPAMKERGKAAGVKGWIVKPFKGDAVLETFRKL 119


>ref|YP_004231236.1| response regulator receiver protein [Burkholderia sp. CCGE1001]
 gb|ADX58176.1| response regulator receiver protein [Burkholderia sp. CCGE1001]
          Length = 121

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 97/119 (81%), Positives = 107/119 (89%)

Query: 1   MAQILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLAKLKSDPAIKLVVSDVNMPNMD 60
           M++ILVVDDSSTVR EV  FLKKNGLDV  AVDG+DGLAKLK+ P IKLV+SDVNMPNMD
Sbjct: 1   MSKILVVDDSSTVRDEVAGFLKKNGLDVDTAVDGKDGLAKLKTSPGIKLVISDVNMPNMD 60

Query: 61  GLTMAEKIRSELGNATVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKL 119
           GLTM EKIRSEL N TVN+IMLTTE+SP MKERGKAAG+KGWIVKPFKG+AVL TF+KL
Sbjct: 61  GLTMVEKIRSELANKTVNVIMLTTESSPAMKERGKAAGVKGWIVKPFKGDAVLETFRKL 119