BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4867.p (241 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775880.1| methyl-accepting chemotaxis protein [Herbasp... 309 3e-82 ref|YP_001353297.1| hypothetical protein mma_1607 [Janthinobacte... 216 2e-54 ref|YP_970474.1| methyl-accepting chemotaxis sensory transducer ... 144 1e-32 ref|YP_004235498.1| chemotaxis sensory transducer [Acidovorax av... 139 3e-31 ref|YP_003605097.1| methyl-accepting chemotaxis sensory transduc... 126 3e-27 >ref|YP_003775880.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ63972.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 241 Score = 309 bits (791), Expect = 3e-82, Method: Composition-based stats. Identities = 195/241 (80%), Positives = 215/241 (89%) Query: 1 MFQSLLLVALGAALAGLPMAALWLRQKRRARQLIDAGQLERVRDQAQAALAEQQQQWSAH 60 M ++LLVALGA LAGLP+A LWLRQ+RRA++LIDAGQLE VR QAQ ALA Q+QQ AH Sbjct: 1 MVNAILLVALGAVLAGLPLALLWLRQQRRAQRLIDAGQLELVRQQAQEALARQEQQMQAH 60 Query: 61 QQQLEQDRLAAQQHMAEMRRESEAMLARLSSEQSDHVSRVRQSCDESQDTISKLLGLVRT 120 +QQ Q+R +AQQ + EMR ESE M+ +L S+QSD+ SRV+++CD SQDTI+KLLGLVRT Sbjct: 61 EQQARQERQSAQQLLEEMRLESETMIGQLQSQQSDNFSRVKENCDASQDTIAKLLGLVRT 120 Query: 121 FERWHDDMNELIAHNREMHRKNDEFALIVNQVIIVALNASIEAARAGVHGRGFAVVAQEV 180 FERWHDDMN LIAHNR+MHR NDEFALIVNQVIIVALNASIEAARAG HGRGFAVVAQEV Sbjct: 121 FERWHDDMNVLIAHNRDMHRMNDEFALIVNQVIIVALNASIEAARAGAHGRGFAVVAQEV 180 Query: 181 RDLAQRAEKLSKSYRANLYQNDLITTTTFQDLQAGGKMIMGAVIGLDLINKKTRQALAEA 240 RDLAQRAEKLSKSYRANLYQNDLITTTTFQDLQAGGKMIMGAVIGLDLINKKTR LAEA Sbjct: 181 RDLAQRAEKLSKSYRANLYQNDLITTTTFQDLQAGGKMIMGAVIGLDLINKKTRDTLAEA 240 Query: 241 A 241 A Sbjct: 241 A 241 >ref|YP_001353297.1| hypothetical protein mma_1607 [Janthinobacterium sp. Marseille] gb|ABR91300.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 239 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 126/210 (60%), Positives = 163/210 (77%) Query: 28 RRARQLIDAGQLERVRDQAQAALAEQQQQWSAHQQQLEQDRLAAQQHMAEMRRESEAMLA 87 RR ++D Q + + Q + + QQ+ H+Q LEQ++L Q +++++ E E ++ Sbjct: 28 RRLAGMVDIAQAQALEHDLQNVMRDMQQKMEQHEQLLEQEKLLNQDQLSQLQEEHEQLIQ 87 Query: 88 RLSSEQSDHVSRVRQSCDESQDTISKLLGLVRTFERWHDDMNELIAHNREMHRKNDEFAL 147 LS +D + ++C+ + DTI++L+GL++TFERWHDDM LI HNREM KNDEFAL Sbjct: 88 SLSERNADSNAIAVENCERAADTIARLMGLIKTFERWHDDMGVLIKHNREMRVKNDEFAL 147 Query: 148 IVNQVIIVALNASIEAARAGVHGRGFAVVAQEVRDLAQRAEKLSKSYRANLYQNDLITTT 207 IVNQVIIVALNASIEAARAG HGRGFAVVA EVR LAQRAEKLSKSYR+NL+++DLITTT Sbjct: 148 IVNQVIIVALNASIEAARAGEHGRGFAVVAAEVRSLAQRAEKLSKSYRSNLHESDLITTT 207 Query: 208 TFQDLQAGGKMIMGAVIGLDLINKKTRQAL 237 TFQDLQAGGKMI+GAVIGL+L+N KT++AL Sbjct: 208 TFQDLQAGGKMIVGAVIGLNLVNDKTKEAL 237 >ref|YP_970474.1| methyl-accepting chemotaxis sensory transducer [Acidovorax citrulli AAC00-1] gb|ABM32700.1| methyl-accepting chemotaxis sensory transducer [Acidovorax citrulli AAC00-1] Length = 252 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 103/230 (44%), Positives = 141/230 (61%), Gaps = 18/230 (7%) Query: 23 WLRQKRRARQLIDAGQLERVRDQAQAALAEQQQQWSAHQQQLEQDRLAAQQHMAEMRRES 82 WL +RR+ LE+ R QA A Q LE + +A+ RR+ Sbjct: 25 WLSARRRS-------ALEQARRQAMDGAAAGDAAAREAAQALEARSAQLEAELAQARRQF 77 Query: 83 EAMLA----RLSSEQSDHVSRVRQSCDES-------QDTISKLLGLVRTFERWHDDMNEL 131 + A RL E R+R+ D + + + +L G+ +TFERWH DM+ L Sbjct: 78 DDASAEWERRLEGEGRASEHRLRERADHTLGHARAQAEALRELQGIGKTFERWHADMSTL 137 Query: 132 IAHNREMHRKNDEFALIVNQVIIVALNASIEAARAGVHGRGFAVVAQEVRDLAQRAEKLS 191 +AHNR +H KND F+ IV +++IVALNASIEAARAGV GRGF VVA E+R+L+ AE+LS Sbjct: 138 VAHNRSLHDKNDAFSQIVRKMVIVALNASIEAARAGVAGRGFDVVATEMRELSASAERLS 197 Query: 192 KSYRANLYQNDLITTTTFQDLQAGGKMIMGAVIGLDLINKKTRQALAEAA 241 + YR +LY+NDLI TTTFQD+QAGGKM++ A +GL+L N++ + AL AA Sbjct: 198 RDYRTSLYENDLIATTTFQDMQAGGKMVINAAMGLELANRRIQAALDGAA 247 >ref|YP_004235498.1| chemotaxis sensory transducer [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX46931.1| chemotaxis sensory transducer [Acidovorax avenae subsp. avenae ATCC 19860] Length = 265 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 94/207 (45%), Positives = 134/207 (64%), Gaps = 12/207 (5%) Query: 43 RDQAQAALAEQQQQWSAHQQQLEQDRLAA-QQHMAEMRRESEAMLA----RLSSEQSDHV 97 R ++QA +Q S H + Q+R A + + + +R+ + A RL Sbjct: 44 RARSQALAVQQAADASRHAAEALQERCAQLEAELVQAQRQFDDAAAEWQHRLGESDQASE 103 Query: 98 SRVRQSCDES-------QDTISKLLGLVRTFERWHDDMNELIAHNREMHRKNDEFALIVN 150 R RQ + + + + +L G+ +TFERWH DM+ L+AHNR +H KND F+ IV Sbjct: 104 QRTRQLGENTLHHALTQAEALRELQGIGKTFERWHADMSTLVAHNRSLHDKNDAFSQIVR 163 Query: 151 QVIIVALNASIEAARAGVHGRGFAVVAQEVRDLAQRAEKLSKSYRANLYQNDLITTTTFQ 210 +++IVALNASIEAARAGV GRGF VVA E+R+L+ AE+LS+ YR +LY+NDLI TTTFQ Sbjct: 164 KMVIVALNASIEAARAGVAGRGFDVVATEMRELSASAERLSRDYRTSLYENDLIATTTFQ 223 Query: 211 DLQAGGKMIMGAVIGLDLINKKTRQAL 237 D+QAGGKM++ A +GL+L N++ + AL Sbjct: 224 DMQAGGKMVINAAMGLELANRRIQAAL 250 >ref|YP_003605097.1| methyl-accepting chemotaxis sensory transducer [Burkholderia sp. CCGE1002] gb|ADG15586.1| methyl-accepting chemotaxis sensory transducer [Burkholderia sp. CCGE1002] Length = 243 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 89/218 (40%), Positives = 139/218 (63%), Gaps = 8/218 (3%) Query: 31 RQLIDAGQLERVRDQAQAALAEQQQQWSAHQQQLEQDRLAAQQHMAEMR-------RESE 83 R+L + + +RV A+ AL +Q +Q + +R+A + +AE+R R E Sbjct: 26 RKLRVSAEAQRVDTLARQALEQQLDAAVLVGEQADGERVALEALLAELRAQAEQGERNRE 85 Query: 84 AMLARLSSEQSDHVSRVRQSCDESQDTISKLLGLVRTFERWHDDMNELIAHNREMHRKND 143 A+ A L + + ++ + + + ++L L TFERWH+ M L++ NR+MH+KN Sbjct: 86 ALQASLDAASARSNEWLQHATRIAHEA-ARLKALTITFERWHEQMISLMSQNRDMHKKNQ 144 Query: 144 EFALIVNQVIIVALNASIEAARAGVHGRGFAVVAQEVRDLAQRAEKLSKSYRANLYQNDL 203 E + IV V+IV+LNASIEAARAG GRGF++VA EVR LA R+++LSKSY+ +L++NDL Sbjct: 145 ELSSIVQHVLIVSLNASIEAARAGTAGRGFSIVAGEVRSLASRSQELSKSYQESLHRNDL 204 Query: 204 ITTTTFQDLQAGGKMIMGAVIGLDLINKKTRQALAEAA 241 T TFQD+QAGGKMI ++ G++++ + + L +AA Sbjct: 205 TTAATFQDIQAGGKMITASLGGVEVLATQFQSRLEQAA 242