BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4861.p         (142 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775885.1| hypothetical protein Hsero_2478 [Herbaspiril...   116   9e-25

>ref|YP_003775885.1| hypothetical protein Hsero_2478 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63977.1| hypothetical protein Hsero_2478 [Herbaspirillum seropedicae SmR1]
          Length = 116

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 61/86 (70%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 55  HQRRTRRWCMAGLVGIPLLLGVLWQPFVAAR-GGPWFYADHLCDCREVVSLWVWDYVWTQ 113
           H+R+ +RWC+AG+VGIPLLL  LW  F AAR GG W YAD +C CR+V++ WV DYVWTQ
Sbjct: 28  HRRQMQRWCLAGVVGIPLLLTFLWLQFAAARSGGDWLYADQVCGCRDVLASWVSDYVWTQ 87

Query: 114 MIWLPGNALFLLIWIALAVKLWSGKR 139
           MIWLPGN LFLLIW ALAVKLWS KR
Sbjct: 88  MIWLPGNTLFLLIWGALAVKLWSDKR 113