BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4860.p (183 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775886.1| TetR family transcription regulator protein ... 302 1e-80 ref|YP_002955439.1| TetR family transcriptional regulator [Desul... 146 1e-33 ref|ZP_08866159.1| putative transcriptional regulator [Desulfovi... 141 4e-32 ref|YP_001307880.1| TetR family transcriptional regulator [Clost... 124 7e-27 ref|YP_001392926.1| TetR family transcriptional regulator [Clost... 123 1e-26 >ref|YP_003775886.1| TetR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63978.1| TetR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 154/168 (91%), Positives = 163/168 (97%) Query: 1 MLEEIGFDKLSLEGVAARAGVGKATIYRWWPNKSALAMEALLRAVEPLPPLGDSGSARDD 60 MLEEIGFDKLSLEGVAARAGVGKATIYRWWPNKSALAMEALLRAVEP+PP+GDSGS+R D Sbjct: 66 MLEEIGFDKLSLEGVAARAGVGKATIYRWWPNKSALAMEALLRAVEPMPPIGDSGSSRTD 125 Query: 61 IEQHMLQLSQLLRGKSGRVVREMIALAQFEPESRRIFNDNYLEPRRLALVNVLRRGAQRG 120 IE HMLQLSQLLRGKSGRVVREMIALAQFEPES+RIFNDNYLEPRRLALV+VLRRGAQRG Sbjct: 126 IELHMLQLSQLLRGKSGRVVREMIALAQFEPESKRIFNDNYLEPRRLALVSVLRRGAQRG 185 Query: 121 EFREDADLNLVFDLLYAPVLQRLLTGSADIDERQIQSQLKLVLGSIAL 168 EFREDADL+LVFDLLYAP+LQRLLTG DIDERQ+Q+QLKLVLGSI L Sbjct: 186 EFREDADLSLVFDLLYAPLLQRLLTGQGDIDERQVQAQLKLVLGSITL 233 >ref|YP_002955439.1| TetR family transcriptional regulator [Desulfovibrio magneticus RS-1] dbj|BAH77553.1| TetR family transcriptional regulator [Desulfovibrio magneticus RS-1] Length = 197 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 79/166 (47%), Positives = 106/166 (63%) Query: 1 MLEEIGFDKLSLEGVAARAGVGKATIYRWWPNKSALAMEALLRAVEPLPPLGDSGSARDD 60 +L E+GF L++EG+AARAGVGKAT+YRWWP+K A+AMEA L + P + A DD Sbjct: 29 LLAEVGFAGLTMEGIAARAGVGKATVYRWWPSKGAVAMEAFLAGLTPRIAYPHTDCAVDD 88 Query: 61 IEQHMLQLSQLLRGKSGRVVREMIALAQFEPESRRIFNDNYLEPRRLALVNVLRRGAQRG 120 + ML+L++ RG GRVV E+IAL Q +PE+ +F D YL PRR A VLRRG G Sbjct: 89 VVTQMLRLAEAYRGAGGRVVCELIALGQADPEAMAVFLDGYLLPRREAGKEVLRRGVAAG 148 Query: 121 EFREDADLNLVFDLLYAPVLQRLLTGSADIDERQIQSQLKLVLGSI 166 + R DADL+ + D LYAP+ R+L +D+ I+ LV + Sbjct: 149 QIRPDADLDAMVDALYAPIFLRILLRHQPLDDDFIRHVADLVFSGL 194 >ref|ZP_08866159.1| putative transcriptional regulator [Desulfovibrio sp. A2] gb|EGY25301.1| putative transcriptional regulator [Desulfovibrio sp. A2] Length = 199 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 72/156 (46%), Positives = 104/156 (66%) Query: 1 MLEEIGFDKLSLEGVAARAGVGKATIYRWWPNKSALAMEALLRAVEPLPPLGDSGSARDD 60 +LEE+G+ +L++EG+A+RAGV KAT+YRWWP K A+AMEA + A +P + SA D Sbjct: 30 LLEEVGYARLTMEGIASRAGVSKATLYRWWPGKGAVAMEAFMDATKPRIDFPHTDSAVAD 89 Query: 61 IEQHMLQLSQLLRGKSGRVVREMIALAQFEPESRRIFNDNYLEPRRLALVNVLRRGAQRG 120 + M L+++ RG +GR+VRE+I L Q +P++ F ++YL PRR A + LRRG +G Sbjct: 90 VTAQMHLLAEVYRGVTGRLVRELIGLGQGDPQTLAAFVESYLLPRRAAAKDALRRGIAQG 149 Query: 121 EFREDADLNLVFDLLYAPVLQRLLTGSADIDERQIQ 156 E R D DL L+ D LYAP+ RLL +D+ I+ Sbjct: 150 ELRPDIDLELLVDALYAPIFHRLLLQHGPLDDAFIR 185 >ref|YP_001307880.1| TetR family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gb|ABR32924.1| transcriptional regulator, TetR family [Clostridium beijerinckii NCIMB 8052] Length = 192 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 64/169 (37%), Positives = 96/169 (56%) Query: 1 MLEEIGFDKLSLEGVAARAGVGKATIYRWWPNKSALAMEALLRAVEPLPPLGDSGSARDD 60 +L E GF +++E +A +AGV KATIY+WW NK+A+ M+A A P+ D+GS DD Sbjct: 24 LLLESGFGSVTIEKIAEKAGVSKATIYKWWSNKAAVVMDAFFDAAVVRLPVPDTGSTMDD 83 Query: 61 IEQHMLQLSQLLRGKSGRVVREMIALAQFEPESRRIFNDNYLEPRRLALVNVLRRGAQRG 120 I + L+ L + G+V+ E+IA Q + + + Y +PRRL +L RG RG Sbjct: 84 IIIQVNNLANFLTSREGKVINEIIAEGQSDQKLAETYRTVYFKPRRLDSRYILERGISRG 143 Query: 121 EFREDADLNLVFDLLYAPVLQRLLTGSADIDERQIQSQLKLVLGSIALS 169 E +ED D+ LV DL++ P+ RLL +DE I++ + I S Sbjct: 144 ELKEDLDIELVMDLVFGPLFYRLLITGDIVDENFIRNMVTCAFNGITKS 192 >ref|YP_001392926.1| TetR family transcriptional regulator [Clostridium botulinum F str. Langeland] gb|ABS41270.1| transcriptional regulator, TetR family [Clostridium botulinum F str. Langeland] gb|ADG01280.1| transcriptional regulator, TetR family [Clostridium botulinum F str. 230613] Length = 190 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 64/166 (38%), Positives = 96/166 (57%) Query: 1 MLEEIGFDKLSLEGVAARAGVGKATIYRWWPNKSALAMEALLRAVEPLPPLGDSGSARDD 60 +L E GF +++E +A RAGV KATIY+WWPNK+A+ M+A A P+ D+GS +D Sbjct: 24 LLLENGFGAVTVEKIAERAGVSKATIYKWWPNKAAVVMDAFFDAAVVRLPIPDTGSTIND 83 Query: 61 IEQHMLQLSQLLRGKSGRVVREMIALAQFEPESRRIFNDNYLEPRRLALVNVLRRGAQRG 120 + + L++ L + G+V+ E+IA QF + + Y +PRRL +L RG RG Sbjct: 84 MIIQVNNLAKFLISREGKVINEIIAEGQFNQKLAEAYRAIYFKPRRLDSQYILERGISRG 143 Query: 121 EFREDADLNLVFDLLYAPVLQRLLTGSADIDERQIQSQLKLVLGSI 166 E +ED D+ LV DL++ P+ RLL +DE I+ + I Sbjct: 144 ELKEDLDIELVIDLIFGPLFYRLLITGDMVDEAFIKDLINYAFKGI 189