BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4858.p (210 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_609892.1| CAIB/BAIF family CoA transferase [Pseudomonas e... 236 2e-60 gb|EGP43234.1| CAIB/BAIF family CoA transferase [Achromobacter x... 224 9e-57 ref|YP_350111.1| L-carnitine dehydratase/bile acid-inducible pro... 219 2e-55 ref|ZP_06639790.1| CaiB/BaiF family protein [Serratia odorifera ... 219 2e-55 ref|YP_004501548.1| L-carnitine dehydratase/bile acid-inducible ... 219 2e-55 >ref|YP_609892.1| CAIB/BAIF family CoA transferase [Pseudomonas entomophila L48] emb|CAK17108.1| putative CoA-transferase family III (CaiB/BaiF) [Pseudomonas entomophila L48] Length = 452 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 126/209 (60%), Positives = 156/209 (74%) Query: 1 MTLGKRCAQLELDRPEDRATLETLLAQADVMVHGYRSDALEHLGLDAERRRALNPALVDV 60 +TLGKRCA+L+L PE R E L+ +ADV+VHGYR+DALEHLGL AE RR LNP L+DV Sbjct: 240 VTLGKRCARLDLHTPEGRRLFEQLMTEADVLVHGYRADALEHLGLGAEWRRQLNPGLIDV 299 Query: 61 ALDAYGWSGPWAGRRGFDSLVQMSSGIADFGMKQKGSDQPVPLPVQALDHATGYLLAASV 120 +L+AYGWSGPW RRGFDSLVQMSSGIA GM+ + +++PVPLPVQALDHATGYL+AA Sbjct: 300 SLNAYGWSGPWRDRRGFDSLVQMSSGIARAGMRWRQAERPVPLPVQALDHATGYLMAAEA 359 Query: 121 LRGLALRQQSGQGSQYRLSLARTARLLADYPAVSGQLPLAPETMADVHPHLEMTVWGPAR 180 +R L R +GQG + RLSLARTA+LL ++ + LPLAPE+ D+ PHLE T WG R Sbjct: 360 IRALGERLLTGQGCRSRLSLARTAKLLVEHGTMDEDLPLAPESADDLDPHLERTPWGETR 419 Query: 181 RLRGPLGVGVAAMAWDRPASPLRSVQPAW 209 R++ PL VG A ++W A L S + W Sbjct: 420 RIKAPLKVGEARLSWSLGACELGSSKACW 448 >gb|EGP43234.1| CAIB/BAIF family CoA transferase [Achromobacter xylosoxidans AXX-A] Length = 338 Score = 224 bits (570), Expect = 9e-57, Method: Composition-based stats. Identities = 127/210 (60%), Positives = 156/210 (74%), Gaps = 1/210 (0%) Query: 1 MTLGKRCAQLELDRPEDRATLETLLAQADVMVHGYRSDALEHLGLDAERRRALNPALVDV 60 + LGKRCA+L+L +D ATLE LL +ADV++HGYR+DAL LGLDA+RRR LNP LVDV Sbjct: 124 VVLGKRCARLDLKSAKDLATLERLLGEADVLIHGYRADALARLGLDADRRRQLNPTLVDV 183 Query: 61 ALDAYGWSGPWAGRRGFDSLVQMSSGIADFGMKQKGSDQPVPLPVQALDHATGYLLAASV 120 +LDAYGWSGPW GRRGFDSLVQMS+GIA+ GM+ KG+D+PVPLP QALDHATGYL+AA+ Sbjct: 184 SLDAYGWSGPWQGRRGFDSLVQMSTGIAEAGMRAKGADRPVPLPCQALDHATGYLMAAAA 243 Query: 121 LRGLALRQQSGQGSQYRLSLARTARLLADYPA-VSGQLPLAPETMADVHPHLEMTVWGPA 179 +RGL R +G G+ R SLAR+A+LL + + G LAPET AD E T WGPA Sbjct: 244 IRGLTERLATGAGNTTRASLARSAQLLVTHRGMLEGGPALAPETQADWSAATEETSWGPA 303 Query: 180 RRLRGPLGVGVAAMAWDRPASPLRSVQPAW 209 RR+R P+ + +WD PAS L S + W Sbjct: 304 RRVRPPMWIEGTPQSWDYPASALGSSEATW 333 >ref|YP_350111.1| L-carnitine dehydratase/bile acid-inducible protein F [Pseudomonas fluorescens Pf0-1] gb|ABA76120.1| putative CoA transferase family protein [Pseudomonas fluorescens Pf0-1] Length = 448 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 122/209 (58%), Positives = 150/209 (71%), Gaps = 1/209 (0%) Query: 1 MTLGKRCAQLELDRPEDRATLETLLAQADVMVHGYRSDALEHLGLDAERRRALNPALVDV 60 +TLGKRCA+L+L P DRA E+LL AD+++HGYR+DALEHLG ERRR L P L+DV Sbjct: 241 VTLGKRCARLDLHVPADRAVFESLLKDADILLHGYRADALEHLGFGVERRRQLAPELIDV 300 Query: 61 ALDAYGWSGPWAGRRGFDSLVQMSSGIADFGMKQKGSDQPVPLPVQALDHATGYLLAASV 120 L+AYGWSGPW RRGFDSLVQMSSGIA+ G + K +D+P PLPVQALDHATGYL+AASV Sbjct: 301 CLNAYGWSGPWQNRRGFDSLVQMSSGIAEAGQRWKQADKPTPLPVQALDHATGYLMAASV 360 Query: 121 LRGLALRQQSGQGSQYRLSLARTARLLADYPAVSGQLPLAPETMADVHPHLEMTVWGPAR 180 +R LA R +SG+G RLSLARTA+LL ++ + Q L PE D +E T WGPA Sbjct: 361 IRLLAERLRSGRGGSARLSLARTAKLLIEHGPGTDQ-ALLPENPQDQSLSVEQTPWGPAH 419 Query: 181 RLRGPLGVGVAAMAWDRPASPLRSVQPAW 209 RL+ PL + + W PA+ L S + W Sbjct: 420 RLQAPLRIAGTPLQWTLPATELGSHRAQW 448 >ref|ZP_06639790.1| CaiB/BaiF family protein [Serratia odorifera DSM 4582] gb|EFE95435.1| CaiB/BaiF family protein [Serratia odorifera DSM 4582] Length = 444 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 119/211 (56%), Positives = 146/211 (69%), Gaps = 2/211 (0%) Query: 1 MTLGKRCAQLELDRPEDRATLETLLAQADVMVHGYRSDALEHLGLDAERRRALNPALVDV 60 +TLGKRCA+L L DR T E LL+QADV+VHGYR+ ALE LG D E+RR L+P L+DV Sbjct: 231 VTLGKRCARLNLHNTHDRTTFEQLLSQADVLVHGYRAGALEKLGYDTEQRRTLSPGLIDV 290 Query: 61 ALDAYGWSGPWAGRRGFDSLVQMSSGIADFGMKQKGSDQPVPLPVQALDHATGYLLAASV 120 L+AYGWSGPW RRGFDSLVQMS G+A GM D P+PLPVQALDHATGY++AA+V Sbjct: 291 CLNAYGWSGPWRSRRGFDSLVQMSCGLAAEGMVWSTCDMPLPLPVQALDHATGYMMAAAV 350 Query: 121 LRGLALRQQSGQGSQYRLSLARTARLLADYPAVSGQL--PLAPETMADVHPHLEMTVWGP 178 L G+ R G G RLSLARTA+LL D P + PL P + D +P +E+T WG Sbjct: 351 LEGMCQRLARGTGYSARLSLARTAQLLFDNPHPQHHVLSPLQPARLEDENPEIELTTWGA 410 Query: 179 ARRLRGPLGVGVAAMAWDRPASPLRSVQPAW 209 A+RL+ PL + A+ W RPA+ L S + W Sbjct: 411 AQRLQAPLRLDGTALQWARPANALGSAKAEW 441 >ref|YP_004501548.1| L-carnitine dehydratase/bile acid-inducible protein F [Serratia sp. AS12] ref|YP_004506500.1| L-carnitine dehydratase/bile acid-inducible protein F [Serratia sp. AS9] gb|AEF46239.1| L-carnitine dehydratase/bile acid-inducible protein F [Serratia sp. AS9] gb|AEF51191.1| L-carnitine dehydratase/bile acid-inducible protein F [Serratia sp. AS12] gb|AEG28899.1| L-carnitine dehydratase/bile acid-inducible protein F [Serratia sp. AS13] Length = 461 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 125/209 (59%), Positives = 146/209 (69%), Gaps = 2/209 (0%) Query: 3 LGKRCAQLELDRPEDRATLETLLAQADVMVHGYRSDALEHLGLDAERRRALNPALVDVAL 62 LGKRCA+L L+ DR T E LL ADV+VHGYR+ ALE LG AE+RRAL+P L+DV L Sbjct: 250 LGKRCARLNLNNAHDRHTFEHLLQNADVIVHGYRAGALEKLGYGAEQRRALSPGLIDVCL 309 Query: 63 DAYGWSGPWAGRRGFDSLVQMSSGIADFGMKQKGSDQPVPLPVQALDHATGYLLAASVLR 122 +AYGWSGPW GRRGFDSLVQMS G+A GM K + PVPLPVQALDHATGYL+A +VL Sbjct: 310 NAYGWSGPWRGRRGFDSLVQMSCGLAASGMTWKNAAMPVPLPVQALDHATGYLMATAVLH 369 Query: 123 GLALRQQSGQGSQYRLSLARTARLLADYPAVSGQL--PLAPETMADVHPHLEMTVWGPAR 180 G+ R + G RLSLARTA+LL D P GQL PLAP T AD +P E+T WG A Sbjct: 370 GMRERLEHRTGYSARLSLARTAQLLFDNPYPQGQLSKPLAPVTAADENPETELTHWGAAL 429 Query: 181 RLRGPLGVGVAAMAWDRPASPLRSVQPAW 209 RL PL + A+ W PA+ L + QP W Sbjct: 430 RLCAPLHLNGTALQWALPATALGTSQPEW 458