BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4857.p (517 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775888.1| outer membrane channel lipoprotein [Herbaspi... 650 0.0 ref|YP_004751902.1| NodT family RND efflux system outer membrane... 495 e-138 ref|YP_995155.1| RND efflux system outer membrane lipoprotein [V... 480 e-133 ref|YP_004156918.1| NodT family RND efflux system outer membrane... 474 e-131 gb|EGP44707.1| rnd efflux system, outer membrane lipoprotein, no... 438 e-120 >ref|YP_003775888.1| outer membrane channel lipoprotein [Herbaspirillum seropedicae SmR1] gb|ADJ63980.1| outer membrane channel lipoprotein [Herbaspirillum seropedicae SmR1] Length = 510 Score = 650 bits (1676), Expect = 0.0, Method: Composition-based stats. Identities = 440/507 (86%), Positives = 470/507 (92%) Query: 1 MVVPFRRVAASARSRHFTHPPQKSPFRAKKGMTVLVLAALLGGCAVGPDYVRPAMDLPQA 60 MVVPFRRVAAS SRHFTH Q PFRA KGMT LVLAALLGGCAVGPDY RPA+DLPQA Sbjct: 4 MVVPFRRVAASVSSRHFTHSTQYLPFRATKGMTALVLAALLGGCAVGPDYARPALDLPQA 63 Query: 61 YKEQGPWKVAAPRQADDHQRWWEAYGDPILNDLVNQANAANQTIQQAAAQYRQAQATAAV 120 YKE GPWK+AAPRQ DDHQ WWEAYGDP+LN L++QANAANQTIQQAAAQYRQAQATA V Sbjct: 64 YKETGPWKLAAPRQIDDHQPWWEAYGDPVLNALMDQANAANQTIQQAAAQYRQAQATAEV 123 Query: 121 ARASLWPTVGAQAGATRAQTNTNGVQRLGDSYTVGLNASWEADVWGRIRRGAEAGDANAQ 180 ARASLWPT+GAQAGA+RAQTNTNGVQRLG+SY+VGLNASWEAD+WGRIRRGAEAG+ANAQ Sbjct: 124 ARASLWPTIGAQAGASRAQTNTNGVQRLGNSYSVGLNASWEADLWGRIRRGAEAGEANAQ 183 Query: 181 ASADSLAAARLAIQATLAQNYLQLRVTDLQKDLYRRTVEAYTRSLQLTTHQYEAGTALRS 240 ASA SLAAARL+IQATLAQ+YLQLRVTDLQKDLYRRTV AYTRSLQL+THQYEAGTALRS Sbjct: 184 ASAASLAAARLSIQATLAQDYLQLRVTDLQKDLYRRTVAAYTRSLQLSTHQYEAGTALRS 243 Query: 241 DVAQAETQLRSAQAQLIDLDATRNQLEHAIAMLIGKAPAAFSLAPLPAAAATDSGMDANA 300 DVAQAETQLR+AQAQLIDLD TRNQLEHAIAMLIGKAPA FSL LP AAA+DS +DANA Sbjct: 244 DVAQAETQLRAAQAQLIDLDDTRNQLEHAIAMLIGKAPAQFSLPALPPAAASDSAIDANA 303 Query: 301 LRLQASLPQIPAGLPSDLLERRPDIANAERLAAAANANIGVARAAYFPTLTLSTTGGYNS 360 RLQ SLPQIP GLPS+LLERRPDIANAERLAAAANANIGVARAAYFPTLTLS +GGYNS Sbjct: 304 ARLQGSLPQIPVGLPSELLERRPDIANAERLAAAANANIGVARAAYFPTLTLSASGGYNS 363 Query: 361 ASFADLFNTPSRVWSLGAALAETLFDGGARTARNDAAMAAYDAAAAQYKQTVLAGLQDVE 420 +FA+LFNTPSRVWSLG+ALAE+LFDGGAR+ARNDAA+AAYDAA AQYKQTVL GLQ+VE Sbjct: 364 LAFANLFNTPSRVWSLGSALAESLFDGGARSARNDAAVAAYDAAVAQYKQTVLGGLQEVE 423 Query: 421 DNLSTLRVLDQESAAQAQAVRSAQLAERLAMSQYQAGTVTYLSVVTTQATSLTNQRSAVT 480 D LSTLRVLDQES QAQAV+SAQLAERLAM QY+AGTVTYLSVVTTQA SLTNQR+AVT Sbjct: 424 DKLSTLRVLDQESTVQAQAVQSAQLAERLAMRQYEAGTVTYLSVVTTQAASLTNQRNAVT 483 Query: 481 LLGRQLVASVALIKATGGGWQVGQTDP 507 LLGRQLVASVALIKATGGGWQ G+ P Sbjct: 484 LLGRQLVASVALIKATGGGWQAGRDAP 510 >ref|YP_004751902.1| NodT family RND efflux system outer membrane lipoprotein [Collimonas fungivorans Ter331] gb|AEK61079.1| RND efflux system, outer membrane lipoprotein, NodT family [Collimonas fungivorans Ter331] Length = 516 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 311/462 (67%), Positives = 361/462 (78%), Gaps = 9/462 (1%) Query: 43 GCAVGPDYVRPAMDLPQAYKEQGPWKVAAPRQADDHQRWWEAYGDPILNDLVNQANAANQ 102 GCAVGPDYVRPAMD+P AYKE GPWK A P+Q D WWE YGD LN LV QAN ANQ Sbjct: 44 GCAVGPDYVRPAMDVPAAYKESGPWKQAQPQQIDS-SNWWEVYGDATLNGLVQQANQANQ 102 Query: 103 TIQQAAAQYRQAQATAAVARASLWPTVGAQAGATRAQTNTNGVQRLGDSYTVGLNASWEA 162 I+ A AQYRQA+A ARA WPT G AG R++TN++GV ++G+SY GL SWE Sbjct: 103 NIRVAEAQYRQARAAGDAARAGFWPTAGISAGTDRSRTNSSGV-KIGNSYNAGLQGSWEP 161 Query: 163 DVWGRIRRGAEAGDANAQASADSLAAARLAIQATLAQNYLQLRVTDLQKDLYRRTVEAYT 222 D+WG +RR EAGDA QASA LAAARL+IQATLAQ+YLQLR+TDL KDLY RT AY Sbjct: 162 DIWGSVRRSVEAGDAGIQASAADLAAARLSIQATLAQDYLQLRITDLLKDLYARTTAAYA 221 Query: 223 RSLQLTTHQYEAGTALRSDVAQAETQLRSAQAQLIDLDATRNQLEHAIAMLIGKAPAAFS 282 RSLQLT +QY AG ALRSDVA AE+QL++A+AQ IDL A R+QLEHAIA+L GKAP+ F+ Sbjct: 222 RSLQLTQNQYAAGVALRSDVALAESQLKTAEAQAIDLQAQRSQLEHAIAILTGKAPSGFN 281 Query: 283 LAPLPAAAATDSGMDANALRLQASLPQIPAGLPSDLLERRPDIANAERLAAAANANIGVA 342 LA LPA S ++QA L +PAGLPSDLLERRPDIA+AER A ANANIGVA Sbjct: 282 LAALPADTQMLS-------KMQAGLLPVPAGLPSDLLERRPDIASAERQVAVANANIGVA 334 Query: 343 RAAYFPTLTLSTTGGYNSASFADLFNTPSRVWSLGAALAETLFDGGARTARNDAAMAAYD 402 +AA+FP LTLS +GG+NSAS A F+TPSRVWSLGAALAET+FDGG R A +D A+A YD Sbjct: 335 KAAFFPALTLSASGGFNSASLAQWFDTPSRVWSLGAALAETIFDGGLRRAHSDQAIAVYD 394 Query: 403 AAAAQYKQTVLAGLQDVEDNLSTLRVLDQESAAQAQAVRSAQLAERLAMSQYQAGTVTYL 462 AA AQYKQTVL G Q+VEDNL+TL+VLDQE+ AQ QAV+++QLAERLA+SQY+AGT TYL Sbjct: 395 AAVAQYKQTVLGGFQEVEDNLATLKVLDQEAIAQNQAVQASQLAERLALSQYRAGTATYL 454 Query: 463 SVVTTQATSLTNQRSAVTLLGRQLVASVALIKATGGGWQVGQ 504 +VVT Q SL N+R+ V LLGRQL+ASVALIKA GGGW Q Sbjct: 455 TVVTAQTLSLGNERTLVQLLGRQLLASVALIKAVGGGWDASQ 496 >ref|YP_995155.1| RND efflux system outer membrane lipoprotein [Verminephrobacter eiseniae EF01-2] gb|ABM56137.1| RND efflux system, outer membrane lipoprotein, NodT family [Verminephrobacter eiseniae EF01-2] Length = 478 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 337/478 (70%), Positives = 378/478 (79%), Gaps = 20/478 (4%) Query: 32 MTVLVLAALLGGCAVGPDYVRPAMDLPQAYKEQGPWKVAAPRQADDHQRWWEAYGDPILN 91 + VL A LG CAVGPDYVRPAMDLP YKEQGPWK+A P + D QRWWEAY D +LN Sbjct: 18 LGVLACALFLGACAVGPDYVRPAMDLPVVYKEQGPWKIATPGRIDSRQRWWEAYQDAVLN 77 Query: 92 DLVNQANAANQTIQQAAAQYRQAQATAAVARASLWPTVGAQAGATRAQTNTNGVQRLGDS 151 DL++QAN ANQ I+ A AQYRQAQA AA+A A LWP V A R+ +NG + ++ Sbjct: 78 DLIDQANRANQNIRFAEAQYRQAQAAAAIAHAGLWPEVSGNASRARS---SNGAE---NT 131 Query: 152 YTVGLNASWEADVWGRIRRGAEAGDANAQASADSLAAARLAIQATLAQNYLQLRVTDLQK 211 Y GLNASWE D+WGR+RR AEAGDA ++A A SLAAARL+IQA LAQNYLQLRVTDLQK Sbjct: 132 YAAGLNASWEVDIWGRVRRLAEAGDAGSEAGAASLAAARLSIQAALAQNYLQLRVTDLQK 191 Query: 212 DLYRRTVEAYTRSLQLTTHQYEAGTALRSDVAQAETQLRSAQAQLIDLDATRNQLEHAIA 271 DLY RTV YTRSLQL HQY+AG ALRSDVAQAETQLRSAQAQ IDLDATR QLEHAIA Sbjct: 192 DLYARTVADYTRSLQLIRHQYDAGVALRSDVAQAETQLRSAQAQWIDLDATRTQLEHAIA 251 Query: 272 MLIGKAPAAFSLAPLPAAAATDSGMDANALRLQASLPQIPAGLPSDLLERRPDIANAERL 331 +LIGKAPAAF+LA LQAS+P IPAG+PSDLLERRPDIANAERL Sbjct: 252 ILIGKAPAAFTLAA--------------QTTLQASMPSIPAGVPSDLLERRPDIANAERL 297 Query: 332 AAAANANIGVARAAYFPTLTLSTTGGYNSASFADLFNTPSRVWSLGAALAETLFDGGART 391 AAAANANIGVARAA+FP LTLS GGY+ ++F+ LF+TP RVWSLG+ALA LFDGGAR Sbjct: 298 AAAANANIGVARAAWFPALTLSAAGGYSGSAFSQLFDTPGRVWSLGSALAALLFDGGARH 357 Query: 392 ARNDAAMAAYDAAAAQYKQTVLAGLQDVEDNLSTLRVLDQESAAQAQAVRSAQLAERLAM 451 ARND A AA+DAA A YKQTVL+GLQ+VEDNLSTLRVL QES Q QAV++AQL+ERLAM Sbjct: 358 ARNDQARAAFDAAVATYKQTVLSGLQEVEDNLSTLRVLAQESQVQDQAVKAAQLSERLAM 417 Query: 452 SQYQAGTVTYLSVVTTQATSLTNQRSAVTLLGRQLVASVALIKATGGGWQVGQTDPAS 509 SQYQAGT TYLSV+TTQA SL NQR AV LLGRQL+ASV+LIKA GGGW + A+ Sbjct: 418 SQYQAGTSTYLSVLTTQAASLANQRGAVQLLGRQLLASVSLIKAVGGGWHASDMNQAA 475 >ref|YP_004156918.1| NodT family RND efflux system outer membrane lipoprotein [Variovorax paradoxus EPS] gb|ADU38807.1| RND efflux system, outer membrane lipoprotein, NodT family [Variovorax paradoxus EPS] Length = 492 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 308/480 (64%), Positives = 369/480 (76%), Gaps = 1/480 (0%) Query: 21 PQKSPFRAKKGMTVLVLAALLGGCAVGPDYVRPAMDLPQAYKEQGPWKVAAPRQADDHQR 80 P SP R LV A LL GCAVGPDYVRP MD+P AYKE GPWK A P+ D Sbjct: 5 PANSPSRRALAPIALV-ALLLAGCAVGPDYVRPQMDVPVAYKETGPWKTAKPQLIDASHP 63 Query: 81 WWEAYGDPILNDLVNQANAANQTIQQAAAQYRQAQATAAVARASLWPTVGAQAGATRAQT 140 WWEAYGD L+ LV QANAANQ I+ A AQYR+AQA AA A A +PTVG AGA RAQT Sbjct: 64 WWEAYGDTTLSALVVQANAANQNIRVAEAQYREAQAIAAAAHAGFFPTVGLDAGANRAQT 123 Query: 141 NTNGVQRLGDSYTVGLNASWEADVWGRIRRGAEAGDANAQASADSLAAARLAIQATLAQN 200 N+ GV + + T+GL ASWE D+WG +RR EAG+AN +ASAD LA ARL+IQ TLAQ+ Sbjct: 124 NSTGVTKRATTDTLGLAASWEPDLWGAVRRSVEAGNANTEASADDLAGARLSIQTTLAQD 183 Query: 201 YLQLRVTDLQKDLYRRTVEAYTRSLQLTTHQYEAGTALRSDVAQAETQLRSAQAQLIDLD 260 YLQ+RV DLQ+ LY T AY ++L+LT HQY AGT LRSDVA AE+QL++A+AQ +DL+ Sbjct: 184 YLQIRVIDLQRGLYASTTAAYAKALELTQHQYAAGTVLRSDVALAESQLKTAEAQAVDLE 243 Query: 261 ATRNQLEHAIAMLIGKAPAAFSLAPLPAAAATDSGMDANALRLQASLPQIPAGLPSDLLE 320 A R QLEHA+A+L G+APA+FSLAPL ++A T + ++ L+ LP PAGLPS+LLE Sbjct: 244 AQRRQLEHAVAVLTGQAPASFSLAPLASSAETTAASLSSTAALRVQLPVTPAGLPSELLE 303 Query: 321 RRPDIANAERLAAAANANIGVARAAYFPTLTLSTTGGYNSASFADLFNTPSRVWSLGAAL 380 RRPDIA AER AANANIGVA+AAY+P + LS +GG+++ + A LFNTPSRVWSLGAAL Sbjct: 304 RRPDIAGAERRVQAANANIGVAKAAYYPQIVLSASGGFSAGNLASLFNTPSRVWSLGAAL 363 Query: 381 AETLFDGGARTARNDAAMAAYDAAAAQYKQTVLAGLQDVEDNLSTLRVLDQESAAQAQAV 440 A+T+FDGG R A + A+AAYDA+ AQYKQTVL G Q VEDNL+ LRVLD+ESA QAQAV Sbjct: 364 AQTVFDGGLRKAHTEQAVAAYDASVAQYKQTVLGGFQQVEDNLAMLRVLDRESALQAQAV 423 Query: 441 RSAQLAERLAMSQYQAGTVTYLSVVTTQATSLTNQRSAVTLLGRQLVASVALIKATGGGW 500 +++QLAERLA+SQY+AGT TYLSVVT Q SLTNQR+A +LGRQL ASV+LI ATGGGW Sbjct: 424 QASQLAERLALSQYRAGTATYLSVVTAQQFSLTNQRTAAQVLGRQLAASVSLIAATGGGW 483 >gb|EGP44707.1| rnd efflux system, outer membrane lipoprotein, nodt family [Achromobacter xylosoxidans AXX-A] Length = 499 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 299/474 (63%), Positives = 352/474 (74%), Gaps = 11/474 (2%) Query: 27 RAKKGMTVLVLAALLGGCAVGPDYVRPAMDLPQAYKEQGPWKVAAPRQADDHQRWWEAYG 86 RA + LV A L GCAVGPDY RPAMDLP YKE GPWK A P D Q WWEAYG Sbjct: 7 RASRWAAGLVAVAGLAGCAVGPDYQRPAMDLPSGYKEAGPWKTAQPGVVDGSQPWWEAYG 66 Query: 87 DPILNDLVNQANAANQTIQQAAAQYRQAQATAAVARASLWPTVGAQAGATRAQTNTNGVQ 146 DP LN L+ AN ANQTIQQA AQYRQA+A A ARA WPTVGA A RA+ + Sbjct: 67 DPTLNGLIVAANGANQTIQQAQAQYRQARAAADAARAGFWPTVGANVSAQRARAKGSTGI 126 Query: 147 RLGDSYTVGLNASWEADVWGRIRRGAEAGDANAQASADSLAAARLAIQATLAQNYLQLRV 206 + +SY ++ SWE D+WG +RR E+ DA+ QAS SLAAARL+IQA LAQ+YLQLR Sbjct: 127 AVSNSYAAAIDVSWEPDLWGAVRRQVESSDASTQASEASLAAARLSIQAALAQDYLQLRA 186 Query: 207 TDLQKDLYRRTVEAYTRSLQLTTHQYEAGTALRSDVAQAETQLRSAQAQLIDLDATRNQL 266 D +KDLY RT++AY R+L+LT QY+AG ALRSDVAQAE QLR+AQAQ IDLD +RNQL Sbjct: 187 VDREKDLYARTLQAYERTLKLTRSQYDAGVALRSDVAQAEAQLRTAQAQAIDLDTSRNQL 246 Query: 267 EHAIAMLIGKAPAAFSLAPLPAAAATDSGMDANALRLQASLPQIPAGLPSDLLERRPDIA 326 EHAIA+L G+APA FSLAPL A +P +P GLPSDLLERRPDIA Sbjct: 247 EHAIAILTGRAPAQFSLAPLAADQP-----------WMFHVPAVPTGLPSDLLERRPDIA 295 Query: 327 NAERLAAAANANIGVARAAYFPTLTLSTTGGYNSASFADLFNTPSRVWSLGAALAETLFD 386 AER A+ANA IGVARAAYFP+L LS GG+ +ASFA FN P RVWSLGAALA T+FD Sbjct: 296 AAERQVASANAAIGVARAAYFPSLVLSAAGGFGAASFAQWFNAPGRVWSLGAALAGTIFD 355 Query: 387 GGARTARNDAAMAAYDAAAAQYKQTVLAGLQDVEDNLSTLRVLDQESAAQAQAVRSAQLA 446 GG R AR+ A+AA+DA+AAQYKQTVL Q+VEDNLSTLRVLD E+ AQ QAV +++L+ Sbjct: 356 GGLRRARDAQAVAAFDASAAQYKQTVLGAFQEVEDNLSTLRVLDDEARAQDQAVAASRLS 415 Query: 447 ERLAMSQYQAGTVTYLSVVTTQATSLTNQRSAVTLLGRQLVASVALIKATGGGW 500 E+LA++QY+AGT T+L+V T QA +L+N+R+AV L GRQ+VASVALIKA GGGW Sbjct: 416 EQLALAQYRAGTTTFLAVATAQALTLSNERNAVQLRGRQMVASVALIKAVGGGW 469