BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4855.p (414 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775889.1| membrane-fusion protein [Herbaspirillum sero... 531 e-149 ref|YP_995154.1| RND family efflux transporter MFP subunit [Verm... 394 e-107 ref|YP_004751901.1| secretion protein [Collimonas fungivorans Te... 386 e-105 ref|YP_004156917.1| RND family efflux transporter mfp subunit [V... 367 3e-99 gb|EGP44708.1| membrane-fusion protein [Achromobacter xylosoxida... 365 7e-99 >ref|YP_003775889.1| membrane-fusion protein [Herbaspirillum seropedicae SmR1] gb|ADJ63981.1| membrane-fusion protein [Herbaspirillum seropedicae SmR1] Length = 403 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 340/401 (84%), Positives = 361/401 (90%) Query: 10 TSPTPQRSPLAIVVATALILAAGVGGWSAMQRATAADQPAAKTAPPVSVSVARVQERDLP 69 TSPTP R + A +L AG+GGW+ +QRA+AADQP AK PPVSV++A VQERDLP Sbjct: 3 TSPTPPRRSRLAIALAAALLMAGIGGWTHLQRASAADQPQAKAPPPVSVTLASVQERDLP 62 Query: 70 LYLAGVGTVTANASVVVKTRIDGQLDKVGFEEGQEVKKGQLLAQIDPRALQAQLAQAEAQ 129 YLAGVGTVTANASVVVKTRIDGQL+KVGF+EG++VKKGQLLAQID RALQAQLAQAEAQ Sbjct: 63 QYLAGVGTVTANASVVVKTRIDGQLEKVGFQEGEDVKKGQLLAQIDARALQAQLAQAEAQ 122 Query: 130 RAKDAATLMNARLDLQRYTTLRSQDAATQQQLDTQKALVAQLEAAVKTDEAQVAYAKVQL 189 RAKD+ATLMNARLDLQRYTTLRSQDAATQQQLDTQKALVAQLEAAVKTDEAQVAYAKVQL Sbjct: 123 RAKDSATLMNARLDLQRYTTLRSQDAATQQQLDTQKALVAQLEAAVKTDEAQVAYAKVQL 182 Query: 190 SYTTINAPLSGRVGARLVDPGNIVHAADANGLVVINQIDPITLVFTLPEEAVVGINRAQR 249 SYTTINAP+SGRVGARLVDPGNIVHA DANGLVVINQIDPITLVFTLPEEAV GINRAQR Sbjct: 183 SYTTINAPISGRVGARLVDPGNIVHATDANGLVVINQIDPITLVFTLPEEAVAGINRAQR 242 Query: 250 NSQQPLKVIAYARDSQEVLATGKLVLLDNQINTTNGTVQLKARFDNAGHKLWPGQYVNAR 309 QQPL+V AYARDSQEVLATGKLVLLDNQINTTNGTVQLKARFDN HKLWPGQYVNAR Sbjct: 243 AHQQPLQVSAYARDSQEVLATGKLVLLDNQINTTNGTVQLKARFDNPDHKLWPGQYVNAR 302 Query: 310 LQMNSHGNALTVPAAAIQRNQQGTYVYAIDQDDKANMQPVKVDRIQDGVAVLAADSGVTA 369 LQM SHGNALTVPAAAIQRNQQGTYVYAIDQ+D+A MQPVKV+RIQDG+AVLAA + V A Sbjct: 303 LQMRSHGNALTVPAAAIQRNQQGTYVYAIDQEDQARMQPVKVERIQDGIAVLAAGNAVQA 362 Query: 370 DQRVVIDGQYKLKPGSRIVESKPQPAKGAVAAAPAANADAK 410 QRVVIDGQYKLKPGSRIVESKPQPAK A A +AK Sbjct: 363 GQRVVIDGQYKLKPGSRIVESKPQPAKAEANAEAKAKGNAK 403 >ref|YP_995154.1| RND family efflux transporter MFP subunit [Verminephrobacter eiseniae EF01-2] gb|ABM56136.1| efflux transporter, RND family, MFP subunit [Verminephrobacter eiseniae EF01-2] Length = 360 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 256/354 (72%), Positives = 295/354 (83%), Gaps = 4/354 (1%) Query: 39 MQRATAADQ-PAAKTAPPVSVSVARVQERDLPLYLAGVGTVTANASVVVKTRIDGQLDKV 97 M+R+ A Q P AP +SV+ R QERD+PLYLAGVGT TANASV VK RIDGQLDKV Sbjct: 1 MRRSDAVAQAPQVAHAPAISVTTVRAQERDIPLYLAGVGTATANASVTVKARIDGQLDKV 60 Query: 98 GFEEGQEVKKGQLLAQIDPRALQAQLAQAEAQRAKDAATLMNARLDLQRYTTLRSQDAAT 157 GF EGQ+V++GQLLAQIDPRALQAQLAQA+AQ+A+D A L NA+ DLQRY TLR QDAAT Sbjct: 61 GFSEGQDVREGQLLAQIDPRALQAQLAQAQAQQARDQAQLGNAQADLQRYMTLRRQDAAT 120 Query: 158 QQQLDTQKALVAQLEAAVKTDEAQVAYAKVQLSYTTINAPLSGRVGARLVDPGNIVHAAD 217 QQQLDTQKALVAQL+AAVKTDEAQ+ YAKVQL YTTI AP+SGR GARLVDPGNIVHAAD Sbjct: 121 QQQLDTQKALVAQLDAAVKTDEAQIKYAKVQLGYTTIKAPISGRAGARLVDPGNIVHAAD 180 Query: 218 ANGLVVINQIDPITLVFTLPEEAVVGINRAQRNSQQPLKVIAYARDSQEV-LATGKLVLL 276 ANGLVVINQIDP+T+ FTLPEEAV INRAQR S+QPLKV AYAR + + LATG+L+LL Sbjct: 181 ANGLVVINQIDPMTVQFTLPEEAVPAINRAQRASRQPLKVTAYARSNNDAPLATGQLILL 240 Query: 277 DNQINTTNGTVQLKARFDNAGHKLWPGQYVNARLQMNSHGNALTVPAAAIQRNQQGTYVY 336 +NQI+T++GTVQLKARF N H LWPGQYVN LQM+ G ALT+PAAA+QRNQ GTYVY Sbjct: 241 NNQIDTSSGTVQLKARFANPQHALWPGQYVNVNLQMSERGMALTLPAAAVQRNQDGTYVY 300 Query: 337 AIDQDDKANMQPVKVDRIQDGVAVLAADSGVTADQRVVIDGQYKLKPGSRIVES 390 + DD +QP++V RIQDG+AV+ G+ + QRVV+DGQYKLKPGSRI E+ Sbjct: 301 IVKADDTVAIQPIEVVRIQDGMAVIG--KGLASAQRVVLDGQYKLKPGSRITEA 352 >ref|YP_004751901.1| secretion protein [Collimonas fungivorans Ter331] gb|AEK61078.1| secretion protein [Collimonas fungivorans Ter331] Length = 393 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 239/385 (62%), Positives = 288/385 (74%), Gaps = 14/385 (3%) Query: 1 MTTSPNSPKTSPTPQRSPLAIVVATALILAAGVGGWSAMQRATAADQPAAKTAP-PVSVS 59 MTT+ + P+++ +++ A+++ G GW+ + +A A Q A K AP +SVS Sbjct: 1 MTTTLSKPRST---------LLITAAILVLIGAAGWAMVHKADA--QGAPKAAPGAISVS 49 Query: 60 VARVQERDLPLYLAGVGTVTANASVVVKTRIDGQLDKVGFEEGQEVKKGQLLAQIDPRAL 119 A V+++D+P+YL+GVGTVT+NASV VK RIDGQLDKVGF EGQ+VK GQLLAQIDPR L Sbjct: 50 TATVKQQDMPMYLSGVGTVTSNASVTVKARIDGQLDKVGFVEGQDVKAGQLLAQIDPRTL 109 Query: 120 QAQLAQAEAQRAKDAATLMNARLDLQRYTTLRSQDAATQQQLDTQKALVAQLEAAVKTDE 179 QAQL QA AQ+AKD A L+N+RLDLQRYTTL QDAATQQ LD KA V QL+AAV+ DE Sbjct: 110 QAQLDQAVAQKAKDQAQLVNSRLDLQRYTTLVQQDAATQQTLDATKAQVNQLQAAVQADE 169 Query: 180 AQVAYAKVQLSYTTINAPLSGRVGARLVDPGNIVHAADANGLVVINQIDPITLVFTLPEE 239 AQ+ +AKVQLS+T I AP+SGRVGARLVDPGNIVHAAD NGLVVINQIDPI +VFTLPEE Sbjct: 170 AQINFAKVQLSFTRILAPISGRVGARLVDPGNIVHAADTNGLVVINQIDPIAVVFTLPEE 229 Query: 240 AVVGINRAQRNSQQPLKVIAYARDSQEVLATGKLVLLDNQINTTNGTVQLKARFDNAGHK 299 IN A R SQ+PL V YAR+S +LA G L LL+NQI+T+ GTVQLK F N H Sbjct: 230 TFQSINSALRGSQKPLSVQTYARNSSAMLAQGNLALLNNQIDTSTGTVQLKGIFQNPSHV 289 Query: 300 LWPGQYVNARLQMNSHGNALTVPAAAIQRNQQGTYVYAIDQDDKANMQPVKVDRIQDGVA 359 LWPGQYVN RL + ALTVPAAA+QR+Q GTY+Y + D +QPV+V IQDG+A Sbjct: 290 LWPGQYVNVRLVLGDRKQALTVPAAAVQRSQDGTYMYVVGADSSVKIQPVQVANIQDGLA 349 Query: 360 VLAADSGVTADQRVVIDGQYKLKPG 384 V+ D V QRVV+DGQYKLKPG Sbjct: 350 VI--DKDVEVGQRVVVDGQYKLKPG 372 >ref|YP_004156917.1| RND family efflux transporter mfp subunit [Variovorax paradoxus EPS] gb|ADU38806.1| efflux transporter, RND family, MFP subunit [Variovorax paradoxus EPS] Length = 408 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 237/404 (58%), Positives = 291/404 (72%), Gaps = 3/404 (0%) Query: 10 TSPTPQRSPLAIVVATALILAAGVGGWSAMQRATAADQPAAKTAPPVSVSVARVQERDLP 69 T+ P + V A L++ G W+ +P A PPV V+ ARV +++ Sbjct: 4 TTSAPLQRRSTWVAAATLVIVLGGSAWALNHNKAFGAKPEAPKTPPVQVTTARVTPQNVQ 63 Query: 70 LYLAGVGTVTANASVVVKTRIDGQLDKVGFEEGQEVKKGQLLAQIDPRALQAQLAQAEAQ 129 +Y +G+GTV + A+V VK RIDGQLDKVGF EGQ+VK GQLLAQ+DPR LQAQLAQA+A Sbjct: 64 VYRSGIGTVASMATVTVKARIDGQLDKVGFTEGQDVKAGQLLAQLDPRTLQAQLAQAQAT 123 Query: 130 RAKDAATLMNARLDLQRYTTLRSQDAATQQQLDTQKALVAQLEAAVKTDEAQVAYAKVQL 189 RAKD A L NAR DL+RYTTL +QDAATQQQLDTQKALV QL A V+TD AQV +A+VQL Sbjct: 124 RAKDEAQLANARADLKRYTTLIAQDAATQQQLDTQKALVNQLAATVQTDAAQVQFAQVQL 183 Query: 190 SYTTINAPLSGRVGARLVDPGNIVHAADANGLVVINQIDPITLVFTLPEEAVVGINRAQR 249 S+T I +P++GRVGARLVDPGNIVHAAD NGLVVINQIDPI + FTLPE++V INR Q+ Sbjct: 184 SFTRIVSPMNGRVGARLVDPGNIVHAADTNGLVVINQIDPIAVQFTLPEDSVQDINRVQQ 243 Query: 250 NSQQPLKVIAYARDSQEVLATGKLVLLDNQINTTNGTVQLKARFDNAGHKLWPGQYVNAR 309 S QPL V+AY R ++L GKL+LL+NQI+TTNGTVQLK F N H LWPGQYVN + Sbjct: 244 QSNQPLAVVAYDRAGNQMLGAGKLILLNNQIDTTNGTVQLKGSFANPQHTLWPGQYVNVQ 303 Query: 310 LQMNSHGNALTVPAAAIQRNQQGTYVYAIDQDDKANMQPVKVDRIQDGVAVLAADSGVTA 369 LQ++ ALT+PAAA+QR Q GTY + +D ++KA+ PV V +I DGVAV+ D G++A Sbjct: 304 LQLDRRQGALTIPAAAVQRGQDGTYAWVVDAENKASNVPVHVVQIADGVAVI--DKGLSA 361 Query: 370 DQRVVIDGQYKLKPGSRIVESKPQPAKGAVAAAPAANADAKGST 413 DQRVV+DGQYKL+ G+ IVE P AK A A A T Sbjct: 362 DQRVVVDGQYKLRAGATIVEP-PSTAKDAKATKTGNAAQVATRT 404 >gb|EGP44708.1| membrane-fusion protein [Achromobacter xylosoxidans AXX-A] Length = 388 Score = 365 bits (938), Expect = 7e-99, Method: Composition-based stats. Identities = 235/366 (64%), Positives = 282/366 (77%), Gaps = 3/366 (0%) Query: 24 ATALILAAGVGGWSAMQRATAADQPAAKTAPPVSVSVARVQERDLPLYLAGVGTVTANAS 83 A L++ G +A + A P V V+ A Q +D+P YL GVGTVT+ AS Sbjct: 17 AAVLVVTLAACGLAAWLWLRGRGETAPAPTPAVPVATALAQRQDVPRYLTGVGTVTSAAS 76 Query: 84 VVVKTRIDGQLDKVGFEEGQEVKKGQLLAQIDPRALQAQLAQAEAQRAKDAATLMNARLD 143 V VK RIDGQLD VGF EGQ+VK GQ+LA IDPRALQAQLAQA+AQRAKD ATL+NARLD Sbjct: 77 VTVKARIDGQLDSVGFVEGQDVKAGQVLANIDPRALQAQLAQAQAQRAKDQATLVNARLD 136 Query: 144 LQRYTTLRSQDAATQQQLDTQKALVAQLEAAVKTDEAQVAYAKVQLSYTTINAPLSGRVG 203 LQRYT L+ +DAATQQ LDTQ+ALVAQLEAA +TD+AQ++YA+VQL YT I AP+SGRVG Sbjct: 137 LQRYTRLQREDAATQQTLDTQRALVAQLEAATQTDDAQISYARVQLDYTRIVAPISGRVG 196 Query: 204 ARLVDPGNIVHAADANGLVVINQIDPITLVFTLPEEAVVGINRAQRNSQQPLKVIAYARD 263 ARLVDPGNIVHAADANGLVVINQIDPIT++F+LPEE+V IN A + Q L V+AYAR Sbjct: 197 ARLVDPGNIVHAADANGLVVINQIDPITVLFSLPEESVPAINAAM-DKGQALTVVAYARG 255 Query: 264 SQEVLATGKLVLLDNQINTTNGTVQLKARFDNAGHKLWPGQYVNARLQMNSHGNALTVPA 323 E L G+LVLL+NQI+TT GTVQLK RFDN H+LWPGQYVNARL ++ H + +TVPA Sbjct: 256 GNEPLEQGQLVLLNNQIDTTTGTVQLKGRFDNPRHRLWPGQYVNARLVLDPHESVVTVPA 315 Query: 324 AAIQRNQQGTYVYAIDQDDKANMQPVKVDRIQDGVAVLAADSGVTADQRVVIDGQYKLKP 383 AA+QR Q T+VY +D A +PVKV+R+QDG+AV+ G+ A QRVV+DGQYKLKP Sbjct: 316 AAVQRGQADTFVYVVDGAGVAQPRPVKVERMQDGLAVI--QQGLDAGQRVVVDGQYKLKP 373 Query: 384 GSRIVE 389 GS++ E Sbjct: 374 GSKVRE 379