BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4853.p         (230 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775891.1| two component heavy metal response transcrip...   412   e-113
ref|YP_995152.1| two component heavy metal response transcriptio...   386   e-105
ref|YP_004751899.1| DNA-binding heavy metal response regulator [...   373   e-102
gb|EGP44710.1| two component heavy metal response transcriptiona...   365   2e-99
ref|YP_004156915.1| winged helix family two component heavy meta...   360   9e-98

>ref|YP_003775891.1| two component heavy metal response transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ63983.1| two component heavy metal response transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 214/230 (93%), Positives = 225/230 (97%)

Query: 1   MKILIVEDEQKMSEYLCKGLTEQGCAVDVASNGIDGQHLAIQHDYDVIVLDVMLPGLDGF 60
           MKILIVEDEQKMSEYLCKGLTEQGCAVD+A+NG+DGQHLAI+HDYDVIVLDVMLPGLDGF
Sbjct: 1   MKILIVEDEQKMSEYLCKGLTEQGCAVDLAANGVDGQHLAIEHDYDVIVLDVMLPGLDGF 60

Query: 61  AVLRSLRTVKQTPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRV 120
           +VLR+LR VK+TPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGR 
Sbjct: 61  SVLRALRKVKETPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRA 120

Query: 121 QEAPQLRIGDLQIDLISRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWDM 180
           QE  QLRIGDLQIDL+SRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWDM
Sbjct: 121 QEPAQLRIGDLQIDLLSRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWDM 180

Query: 181 NFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLEPRATSDAGDE 230
           NFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLEPRAT+D+ D+
Sbjct: 181 NFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLEPRATADSSDD 230


>ref|YP_995152.1| two component heavy metal response transcriptional regulator
           [Verminephrobacter eiseniae EF01-2]
 gb|ABM56134.1| two component heavy metal response transcriptional regulator,
           winged helix family [Verminephrobacter eiseniae EF01-2]
          Length = 231

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 201/229 (87%), Positives = 212/229 (92%)

Query: 1   MKILIVEDEQKMSEYLCKGLTEQGCAVDVASNGIDGQHLAIQHDYDVIVLDVMLPGLDGF 60
           MKILIVEDE KM+EYL KGL+EQGC VD+A+NGIDGQHLAI HDYDVIVLD MLPGLDGF
Sbjct: 1   MKILIVEDEHKMAEYLRKGLSEQGCTVDLAANGIDGQHLAIWHDYDVIVLDAMLPGLDGF 60

Query: 61  AVLRSLRTVKQTPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRV 120
           +VLRSLR +KQTPVIMLTARD VEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGR 
Sbjct: 61  SVLRSLRILKQTPVIMLTARDRVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRA 120

Query: 121 QEAPQLRIGDLQIDLISRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWDM 180
           QE  QLRIGDLQIDL+SRKA R   RIDLTAKEFALLA+MARRQGEILSKTAIAELVWDM
Sbjct: 121 QEPAQLRIGDLQIDLLSRKALRNNTRIDLTAKEFALLAIMARRQGEILSKTAIAELVWDM 180

Query: 181 NFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLEPRATSDAGD 229
           NFDSNTNVVEVAIKRLRAKIDAPF QKLLHT+RGMGYVLEPRAT+  G+
Sbjct: 181 NFDSNTNVVEVAIKRLRAKIDAPFSQKLLHTIRGMGYVLEPRATAHDGE 229


>ref|YP_004751899.1| DNA-binding heavy metal response regulator [Collimonas fungivorans
           Ter331]
 gb|AEK61076.1| DNA-binding heavy metal response regulator [Collimonas fungivorans
           Ter331]
          Length = 229

 Score =  373 bits (958), Expect = e-102,   Method: Composition-based stats.
 Identities = 190/229 (82%), Positives = 207/229 (90%)

Query: 1   MKILIVEDEQKMSEYLCKGLTEQGCAVDVASNGIDGQHLAIQHDYDVIVLDVMLPGLDGF 60
           MKILIVEDE K ++YLCKGLTEQGCAVDVA NG+DGQHLA+QHDYDVIVLDVMLPG+DGF
Sbjct: 1   MKILIVEDELKTADYLCKGLTEQGCAVDVAHNGVDGQHLALQHDYDVIVLDVMLPGIDGF 60

Query: 61  AVLRSLRTVKQTPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRV 120
            VL +LR +KQTPVIMLTARD VEDRIKGL  GADDYL+KPFSFLELLARLQALTRRGR 
Sbjct: 61  TVLHALRAIKQTPVIMLTARDRVEDRIKGLQGGADDYLVKPFSFLELLARLQALTRRGRA 120

Query: 121 QEAPQLRIGDLQIDLISRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWDM 180
            E  QLRI DLQIDLISRKA+R  +RIDLTAKEF+LLAV+ARRQGEILSKTAIAELVWDM
Sbjct: 121 FEPAQLRIADLQIDLISRKAYRANVRIDLTAKEFSLLAVLARRQGEILSKTAIAELVWDM 180

Query: 181 NFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLEPRATSDAGD 229
           NFDSNTNVVEVAIKRLRAKID PF  KLLHT+RGMGYVLEPR+  ++ +
Sbjct: 181 NFDSNTNVVEVAIKRLRAKIDTPFSPKLLHTIRGMGYVLEPRSPQESSE 229


>gb|EGP44710.1| two component heavy metal response transcriptional regulator winged
           helix family protein [Achromobacter xylosoxidans AXX-A]
          Length = 228

 Score =  365 bits (938), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 191/222 (86%), Positives = 207/222 (93%)

Query: 1   MKILIVEDEQKMSEYLCKGLTEQGCAVDVASNGIDGQHLAIQHDYDVIVLDVMLPGLDGF 60
           MKILIVEDE K ++YL KGL EQGCAVDVA NGIDGQHLA++HDYDVIVLD MLPG+DGF
Sbjct: 1   MKILIVEDELKTADYLRKGLGEQGCAVDVAHNGIDGQHLALEHDYDVIVLDAMLPGMDGF 60

Query: 61  AVLRSLRTVKQTPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRV 120
           AVLRSLR+V+QTPVIMLTARD VEDRI+GLHDGADDYL+KPFSFLELLARLQALTRRGR 
Sbjct: 61  AVLRSLRSVRQTPVIMLTARDGVEDRIRGLHDGADDYLVKPFSFLELLARLQALTRRGRA 120

Query: 121 QEAPQLRIGDLQIDLISRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWDM 180
           QE  QLRIGDLQIDLISRKA+R G R+DLTAKEFALLAV+ARRQGEILSKTAIAELVWDM
Sbjct: 121 QEPVQLRIGDLQIDLISRKAWRAGARLDLTAKEFALLAVLARRQGEILSKTAIAELVWDM 180

Query: 181 NFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLEPR 222
           NFDSN NVVEVAIKRLR K+DAPF++KLLHT+RGMGYVLE R
Sbjct: 181 NFDSNVNVVEVAIKRLRGKVDAPFDRKLLHTIRGMGYVLELR 222


>ref|YP_004156915.1| winged helix family two component heavy metal response
           transcriptional regulator [Variovorax paradoxus EPS]
 gb|ADU38804.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus EPS]
          Length = 235

 Score =  360 bits (924), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 189/224 (84%), Positives = 202/224 (90%)

Query: 1   MKILIVEDEQKMSEYLCKGLTEQGCAVDVASNGIDGQHLAIQHDYDVIVLDVMLPGLDGF 60
           MKILIVEDE + ++YL KGLTEQGC VD A NGIDGQHLA+ HDYDVIVLDVMLPG DGF
Sbjct: 1   MKILIVEDELRTADYLSKGLTEQGCTVDAAHNGIDGQHLALTHDYDVIVLDVMLPGQDGF 60

Query: 61  AVLRSLRTVKQTPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRV 120
           AVLR+LR VKQTPVIMLTARD VEDRIKGLH+GADDYL+KPFSFLELLARLQAL RRGR 
Sbjct: 61  AVLRALRAVKQTPVIMLTARDRVEDRIKGLHEGADDYLVKPFSFLELLARLQALNRRGRK 120

Query: 121 QEAPQLRIGDLQIDLISRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWDM 180
           QE  QLRI +LQIDL++RKAFRG  RIDLTAKEFALLAV+ARRQGEILSKTAIAELVWDM
Sbjct: 121 QEPVQLRIANLQIDLLARKAFRGATRIDLTAKEFALLAVLARRQGEILSKTAIAELVWDM 180

Query: 181 NFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLEPRAT 224
           NFDSNTNVVEVAIKRLR KIDAPF  KLLHT+RGMGYV+E R T
Sbjct: 181 NFDSNTNVVEVAIKRLRDKIDAPFSPKLLHTIRGMGYVMELRDT 224