BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4844.p         (93 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_902334.1| hypothetical protein CV_2664 [Chromobacterium v...   102   1e-20
ref|ZP_06689069.1| PAAR domain protein family protein [Achromoba...    86   2e-15
gb|EGP43202.1| PAAR motif family protein 2 [Achromobacter xyloso...    84   6e-15
ref|YP_003979028.1| PAAR motif family protein 1 [Achromobacter x...    84   8e-15
ref|YP_001764410.1| PAAR repeat-containing protein [Burkholderia...    81   5e-14

>ref|NP_902334.1| hypothetical protein CV_2664 [Chromobacterium violaceum ATCC
          12472]
 gb|AAQ60334.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
          12472]
          Length = 198

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/86 (52%), Positives = 61/86 (70%)

Query: 1  MTRAIIRLDDPTSHGGVVQQGFDNVKLYGKPMAGVGHRGYCPKCRCEFIILPGEENYEYL 60
          M++ IIRL D T HGG V + F  + ++GKP AGVGH+  CPKC+  F+I+ G  N  ++
Sbjct: 14 MSKPIIRLGDKTDHGGTVLEAFPTLVIFGKPAAGVGHKVSCPKCKGTFVIVEGAANTSFM 73

Query: 61 GRRVAVEGMKTSCGALLIATQQLARI 86
          G+ VA+EGMKTSCGA LIA+Q  + I
Sbjct: 74 GKNVAIEGMKTSCGATLIASQGQSTI 99


>ref|ZP_06689069.1| PAAR domain protein family protein [Achromobacter piechaudii ATCC
          43553]
 gb|EFF73994.1| PAAR domain protein family protein [Achromobacter piechaudii ATCC
          43553]
          Length = 127

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/86 (52%), Positives = 59/86 (68%), Gaps = 1/86 (1%)

Query: 3  RAIIRLDDPTSHGGVVQQGFDNVKLYGKPMAGVGHRGYCPKCRCEFIILPGE-ENYEYLG 61
          RAIIR  D TSHGG V +G     L G+ +A VGH+  CPKC+  F ILP    N+ ++G
Sbjct: 4  RAIIRKGDRTSHGGTVAEGVPTSMLLGREIALVGHKVVCPKCKGVFPILPDPGRNHSFMG 63

Query: 62 RRVAVEGMKTSCGALLIATQQLARIA 87
             AVEGM+T+CGA+LIA+Q +ARI+
Sbjct: 64 NDTAVEGMRTACGAVLIASQMVARIS 89


>gb|EGP43202.1| PAAR motif family protein 2 [Achromobacter xylosoxidans AXX-A]
          Length = 386

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 59/84 (70%), Gaps = 1/84 (1%)

Query: 3  RAIIRLDDPTSHGGVVQQGFDNVKLYGKPMAGVGHRGYCPKCRCEFIILPGEENYEYLGR 62
          R++IR  D TSHGGVV  G ++V+++G+PMA VG R  CPKC  +  I+ G ++     R
Sbjct: 4  RSVIRKGDRTSHGGVVVTGDESVQIFGQPMARVGDRVTCPKCAGQHTIVEGVQSVSS-DR 62

Query: 63 RVAVEGMKTSCGALLIATQQLARI 86
          R A+EGMKTSCGA LIA+QQ  ++
Sbjct: 63 RTALEGMKTSCGATLIASQQFYQL 86


>ref|YP_003979028.1| PAAR motif family protein 1 [Achromobacter xylosoxidans A8]
 gb|ADP16313.1| PAAR motif family protein 1 [Achromobacter xylosoxidans A8]
          Length = 118

 Score = 84.0 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/87 (51%), Positives = 60/87 (68%), Gaps = 3/87 (3%)

Query: 3  RAIIRLDDPTSHGGVVQQGFDNVKLYGKPMAGVGHRGYCPKCRCEFIIL--PGEENYEYL 60
          R+IIR  D TSHGG V +G     L G+ +A VGH+  CPKC+  F IL  PG  N+ ++
Sbjct: 4  RSIIRKGDRTSHGGTVAEGHPTSMLLGREIALVGHKVTCPKCKGAFPILADPG-RNHSFM 62

Query: 61 GRRVAVEGMKTSCGALLIATQQLARIA 87
          G+  AVEGM+T+CGA+LIA+Q +ARI 
Sbjct: 63 GQDTAVEGMRTACGAVLIASQMVARIG 89


>ref|YP_001764410.1| PAAR repeat-containing protein [Burkholderia cenocepacia MC0-3]
 ref|ZP_04939215.1| PAAR [Burkholderia cenocepacia PC184]
 gb|EAY62386.1| PAAR [Burkholderia cenocepacia PC184]
 gb|ACA90288.1| PAAR repeat-containing protein [Burkholderia cenocepacia MC0-3]
          Length = 137

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 2/86 (2%)

Query: 1  MTRAIIRLDDPTSHGGVVQQGFDNVKLYGKPMAGVGHRGYCPKCRCEFIILPGEENYEYL 60
          M RA+I + D T+HGG V +G     + GKP+AG+GH+  CP+C+  F ILP    Y + 
Sbjct: 1  MARAMICVGDTTTHGGRVLEGSATATIEGKPIAGMGHKVLCPQCKGIFPILPTGRQYSHT 60

Query: 61 --GRRVAVEGMKTSCGALLIATQQLA 84
            GR  AVEGMKT+CGA LIA+Q  A
Sbjct: 61 FDGRETAVEGMKTACGATLIASQSSA 86