BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4843.p (1350 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775897.1| two component hybrid sensor histidine kinase... 2006 0.0 ref|ZP_02883999.1| PAS/PAC sensor hybrid histidine kinase [Burkh... 531 e-148 ref|YP_001927407.1| PAS/PAC sensor hybrid histidine kinase [Meth... 529 e-147 ref|YP_002423327.1| PAS/PAC sensor hybrid histidine kinase [Meth... 528 e-147 ref|YP_002965559.1| sensor hybrid histidine kinase with multiple... 526 e-146 >ref|YP_003775897.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63989.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1278 Score = 2006 bits (5196), Expect = 0.0, Method: Composition-based stats. Identities = 1034/1294 (79%), Positives = 1130/1294 (87%), Gaps = 31/1294 (2%) Query: 72 VLKARLKGKFHDMADISWLRGAGLAAQIVTATDWATSPLGPLGQWSPTLRTSLNIALHSP 131 + KARLKGKF+DMAD SWLRGAG AAQI+TA+DW SPLG QWSP LR +LN L SP Sbjct: 1 MFKARLKGKFYDMADFSWLRGAGPAAQILTASDWTASPLGAPAQWSPMLRATLNQILLSP 60 Query: 132 LPSLLVWGTARQMLYNDAFAACIGTAHPAAFGARLSESALWRG----AARICEAAIGAAF 187 PSLLVWG AR MLYNDAFAAC+G+AHPAA GA L+ A W G +A ++A+ A+ Sbjct: 61 TPSLLVWGGARSMLYNDAFAACLGSAHPAALGAPLTTIAGWPGTDAESAGRLQSAVLASL 120 Query: 188 KGQQQQLGRVSLF--PDAAAAAGTPDQWDLTCVPVWEDAADDQPAQV--AGVLCTLVRST 243 G QQ ++L P AA A +WDL+CVP+WE D+PAQ +GVLCT +R++ Sbjct: 121 AGAPQQAECLALLAPPQAATA-----RWDLSCVPLWEL---DEPAQAQASGVLCTFLRAS 172 Query: 244 GLDAALAHTDMLRDLMEQSPSFKAVVRGPQHVFERVNGAYFKLFGDRPVLGLPAREALPE 303 G+ AL HTD+L DLMEQSPSFKAVVRGP+HVFERVN AYFKLFGDRPV+G PAR ALPE Sbjct: 173 GVQTALLHTDLLSDLMEQSPSFKAVVRGPEHVFERVNSAYFKLFGDRPVIGQPARMALPE 232 Query: 304 LLDENLYELLDRVYQTGQTYTERGARLFLRRAHETGFEGAVLDFVFQPIKGVDGQVAGIF 363 LLDENL+ LLDRVYQTGQ YTERGARLFLRR ++ F+GAVLDFVFQPIK +G+V GIF Sbjct: 233 LLDENLFMLLDRVYQTGQAYTERGARLFLRRGVDSHFDGAVLDFVFQPIKNAEGKVDGIF 292 Query: 364 IEGNDVTERFVAEERLRIVDRAGGIGIFEWFPVSGKLAVSDRFRRLWGLPAEGEVTSQQL 423 IEGNDVTER +AEERLRIVDRAG IGIFEWFP SG+L+VSDRFRRLWGLP EGEVT+ QL Sbjct: 293 IEGNDVTERMLAEERLRIVDRAGEIGIFEWFPDSGRLSVSDRFRRLWGLPPEGEVTAAQL 352 Query: 424 VNMIDEEFHPNLGTSRIKEGGPRNPLEYTEYHITRPDGEQRWLARKGEVVQDDPRAGSRY 483 V MIDE+FHPNLGT+RIKEGG RNPLEYTEYHITRPDG+QRWLARKGEVVQDDPR GSRY Sbjct: 353 VGMIDEQFHPNLGTARIKEGGSRNPLEYTEYHITRPDGQQRWLARKGEVVQDDPRTGSRY 412 Query: 484 VGVVFDVTSRKLMEQALAASEASVRANNAFVRQLLDSTDQGFFSIDREGIVTLCNAAFLK 543 VGV FDVT+RKLMEQALAASEASVRANNAFVRQLLDSTDQGFFSID GI+TLCNAAFL+ Sbjct: 413 VGVAFDVTARKLMEQALAASEASVRANNAFVRQLLDSTDQGFFSIDSAGIITLCNAAFLQ 472 Query: 544 LLGYAGEKDVLGRSIHEVILTSADDGSGARGECAVLKAARDGVTTHVESEDFLRVDGSSF 603 LLGYA EKDVLGR IH+VIL +++ + +R CAVL+AAR+GV+ HV+SE+FLRVDG+SF Sbjct: 473 LLGYAAEKDVLGRPIHDVILQPSEE-TQSRTGCAVLRAAREGVSAHVDSENFLRVDGTSF 531 Query: 604 PVQYQAHPVWQDGELQGALCTFIDLTERRRGMQALSWSENRLTAIFNQASVCFSELDLEG 663 PVQYQ HPVWQDG+LQGALCTF+DLTERRRG+QALSWSENRL AIFNQASVCFSELDL+G Sbjct: 532 PVQYQTHPVWQDGQLQGALCTFVDLTERRRGLQALSWSENRLRAIFNQASVCFSELDLQG 591 Query: 664 RYLRVNQALCRMLGRTEAEMLQMTLADVTHPDDVPMNMTLFKRCIADGSSFTLEKRYLRP 723 RYLRVNQALCRMLGR+E EML MTLADVTHPDDVPMNM+LF RCI DG SFTLEKRYLRP Sbjct: 592 RYLRVNQALCRMLGRSEEEMLGMTLADVTHPDDVPMNMSLFNRCIEDGRSFTLEKRYLRP 651 Query: 724 DGSAFWVSSDISRIVDGEGRPQAMIAVSTDITERRRAEDALRELNDTLEQRVVEEILERS 783 DGS FWVSSDISRIVDGEGRPQAMIAVSTDITERRRAE+ALRELNDTLEQRVVEEILERS Sbjct: 652 DGSTFWVSSDISRIVDGEGRPQAMIAVSTDITERRRAEEALRELNDTLEQRVVEEILERS 711 Query: 784 RAEAALRQMQKMEAVGQLTGGVAHDFNNVLQIIGGNLQLLQTDPRLDDRSRQRVRIAIGA 843 RAEAALRQMQKMEAVGQLTGGVAHDFNNVLQIIGGNLQLLQ+DPRLD+RSRQRVRIAIGA Sbjct: 712 RAEAALRQMQKMEAVGQLTGGVAHDFNNVLQIIGGNLQLLQSDPRLDERSRQRVRIAIGA 771 Query: 844 VDRGAKLSSQLLAFARRQPLQPRSINLERVVLNMDDLLRRAVGENIEISTVITHDLWNTM 903 VDRGAKLSSQLLAFARRQPLQPRSINLERVV NMDDLLRRAVGENI+IST + HDLWNTM Sbjct: 772 VDRGAKLSSQLLAFARRQPLQPRSINLERVVQNMDDLLRRAVGENIDISTRVAHDLWNTM 831 Query: 904 LDPNQVENLIINTAINSRDAMPNGGRLTLQIDNVQLSDPAFLSQADLPPGDYVELQISDN 963 LDPNQVENLIINTAIN+RDAMP+GGRLT+QIDNV+L DP FLSQADL PG+YVELQISDN Sbjct: 832 LDPNQVENLIINTAINARDAMPSGGRLTVQIDNVRLEDPVFLSQADLAPGEYVELQISDN 891 Query: 964 GAGMSPEVRERAFEPFFTTKREGEGTGLGLSMAYGFVKQSKGHISLHSEAGKGTTIRIYF 1023 GAGMSPEVR+RAFEPFFTTK EGEGTGLGLSMAYGFVKQSKGHIS+HSE GKGTTIRIYF Sbjct: 892 GAGMSPEVRDRAFEPFFTTKLEGEGTGLGLSMAYGFVKQSKGHISIHSEQGKGTTIRIYF 951 Query: 1024 PRCIDQEVVIDDNRDMEVRGGDETILVVEDDPNLQLTVIDTLSSLGYRVLKADNGERALA 1083 PRC+D+EV ID+ RD+ V GGDETILVVEDDPNLQLTVIDTLSSLGYRVLKADNGERAL Sbjct: 952 PRCLDEEVRIDEVRDLTVHGGDETILVVEDDPNLQLTVIDTLSSLGYRVLKADNGERALE 1011 Query: 1084 ILQSGIPVDLMFTDVVMPGSVPVTELARQARALLPEIEILFTSGYPRDAIVHEGRLDAGV 1143 ILQSG+ +DL+FTDVVMPGSVPVTELA+QAR L+P+IEILFTSGYPRD IVHEGRLDAGV Sbjct: 1012 ILQSGVAIDLVFTDVVMPGSVPVTELAQQARLLVPDIEILFTSGYPRDTIVHEGRLDAGV 1071 Query: 1144 ELLSKPYRINQLAQRIRQMLSGRAHRIELAQMTRERDQANASADASAMLHVLPVGGSHRQ 1203 ELLSKPYRINQLAQRIRQMLS RAHR+ELAQ+TRERDQA ASA +HVLP + R+ Sbjct: 1072 ELLSKPYRINQLAQRIRQMLSQRAHRVELAQVTRERDQAA----ASATIHVLP--RTERE 1125 Query: 1204 AGGQDAHFDQAGSAGGVVMA-------PEAESVADSASGLRLLVVEDNIDSQQLVCELLE 1256 Q + G A P E D A GLRLLVVEDNIDSQQLVCELLE Sbjct: 1126 PVAQADPLVREAHGAGGASAAQPLPDYPRPEPQED-AGGLRLLVVEDNIDSQQLVCELLE 1184 Query: 1257 TLGHQARGVISAEDAQQALGEQSFDVLFTDVNLPGMSGVDLARSALERFPEMAVIFASGY 1316 TLGHQARGVIS E+A QAL EQ FDVLFTDVNLPGMSGV+LA++AL RFP++AVIFASGY Sbjct: 1185 TLGHQARGVISGEEALQALEEQGFDVLFTDVNLPGMSGVELAKAALGRFPDLAVIFASGY 1244 Query: 1317 GAMVARNVGFASHALPKPYDIDQLQEILKKIATA 1350 G MVARNVGFA+HALPKPYDIDQLQEIL KIA Sbjct: 1245 GTMVARNVGFAAHALPKPYDIDQLQEILDKIAAG 1278 >ref|ZP_02883999.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M] gb|EDT10659.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M] Length = 807 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 341/829 (41%), Positives = 480/829 (57%), Gaps = 54/829 (6%) Query: 522 DQGFFSIDREGIVTLCNAAFLKLLGYAGEKDVLGRSIHEVILTSADDGSGARGECAVLKA 581 D + +G + N + GY+ E++VLG+ + I SA+ + + A+ A Sbjct: 24 DYAVIGLSEDGRIRSWNPGGEAIHGYS-EEEVLGQPLD--IFYSAEQRAKGLPQTALATA 80 Query: 582 ARDGVTTHVESEDF-LRVDGSSFPVQYQAHPVWQ-DGELQGALCTFIDLTERRRGMQALS 639 R+G E E + LR DG +F + DG L G D+T+++ A+ Sbjct: 81 RREG---RFEGESWRLRKDGKAFWASVVLTALRSSDGALLGFGEIVRDMTDKKAVHDAVL 137 Query: 640 WSENRLTAIFNQAS-VCFSELDLEGRYLRVNQALCRMLGRTEAEMLQMTLADVTHPDDVP 698 SE R + + + L EGR N R+ G E++ + P+D Sbjct: 138 ESERRFRLLVDGVTDYAIFMLSPEGRVTNWNSGAHRIKGYAANEIIGSHFSRFYTPEDAA 197 Query: 699 MNMTL--FKRCIADGSSFTLEKRYLRPDGSAFWVSSDISRIVDGEGRPQAMIAVSTDITE 756 + + DG F E +R +GS FW I I G ++ DITE Sbjct: 198 RGLPQRGLEAAARDGR-FESEGWRVRKNGSRFWAHVVIDAIRH-NGTLVGFAKITRDITE 255 Query: 757 RRRAEDALRELNDTLEQRVVEEILERSRAEAALRQMQKMEAVGQLTGGVAHDFNNVLQII 816 R A +LE +R AL Q QKMEA+G+LTGGVAHDFNNV+QI+ Sbjct: 256 RMEAT----------------RLLEETRV--ALVQSQKMEAIGKLTGGVAHDFNNVMQIL 297 Query: 817 GGNLQLLQTDPRLDDRSRQRVRIAIGAVDRGAKLSSQLLAFARRQPLQPRSINLERVVLN 876 GNL+LL++ + D +R+R+ AI AV+RGAKL+SQLLAF R+QPL+P INL + Sbjct: 298 RGNLELLESRHKRDGWTRERLDKAIDAVERGAKLASQLLAFGRQQPLRPIVINLASAIRG 357 Query: 877 MDDLLRRAVGENIEISTVITHDLWNTMLDPNQVENLIINTAINSRDAMPNGGRLTLQIDN 936 MDDLLRRA+GE +EI TV+ LWNT++D +Q+EN+I+N AIN+RDAM GG+LT+++ N Sbjct: 358 MDDLLRRALGETVEIETVVAGGLWNTLVDVHQMENVILNLAINARDAMKEGGKLTMEVSN 417 Query: 937 VQLSDPAFLSQADLPPGDYVELQISDNGAGMSPEVRERAFEPFFTTKREGEGTGLGLSMA 996 L D D+P G YV L ++D+G GM PEV +RAF+PFFTTK EGEGTGLGLSMA Sbjct: 418 AMLDDHYVAGFPDVPAGQYVMLAVTDSGTGMPPEVVQRAFDPFFTTKPEGEGTGLGLSMA 477 Query: 997 YGFVKQSKGHISLHSEAGKGTTIRIYFPRCIDQEVVIDDNRDMEVRGGDETILVVEDDPN 1056 YGFVKQS GHI ++SE G GTT++IY PR +++ V ++ + + GG ETILVVEDD + Sbjct: 478 YGFVKQSGGHIRIYSEVGHGTTVKIYLPRSMEEAVEAPVSQPVTLLGGTETILVVEDDKD 537 Query: 1057 LQLTVIDTLSSLGYRVLKADNGERALAILQSGIPVDLMFTDVVMPGSVPVTELARQARAL 1116 +Q TV+DTLS LGY VLKA++ E+ALA+++SG+ +DL+FTDVVMPG + + QA + Sbjct: 538 VQSTVVDTLSGLGYSVLKANDAEQALAVVRSGVHIDLLFTDVVMPGPLRSPAMVAQAVQM 597 Query: 1117 LPEIEILFTSGYPRDAIVHEGRLDAGVELLSKPYRINQLAQRIRQMLSGRAHRIELAQMT 1176 LP +++LFTSGY ++AIVH GRLD GVELLSKPY QLA +IRQ+L +A + Sbjct: 598 LPRLKVLFTSGYTQNAIVHGGRLDPGVELLSKPYSREQLAYKIRQILG-------VAPLV 650 Query: 1177 RERDQANASADASAMLHVLPVGGSHRQAGGQDAHFDQAGSAGGVVMAPEAESVADSASGL 1236 R + S V +H + + S G E + A + L Sbjct: 651 RTTNTNTNS-----------VSNAHMNSNSNSNSNSNSSSRGH-----ETQQPAGGETSL 694 Query: 1237 RLLVVEDNIDSQQLVCELLETLGHQARGVISAEDAQQALGEQSFDVLFTDVNLPGMSGVD 1296 RLL+V+D+ID+ + + ELL+ +GH S ++A + L Q FDVL TD+++P M G++ Sbjct: 695 RLLLVDDDIDTSEAIGELLKLVGHDPVVTGSPQEALRLLEAQPFDVLITDLSMPVMPGLE 754 Query: 1297 LARSALERFPEMAVIFASGYGAMVARNVGFASHALPKPYDIDQLQEILK 1345 LA+ A + P + VIFASG+ + F AL KPY ID+L +L+ Sbjct: 755 LAQRATQLRPTLRVIFASGHEMPAVDTLPFRWGALRKPYSIDELSAMLR 803 >ref|YP_001927407.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gb|ACB82872.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 1086 Score = 529 bits (1362), Expect = e-147, Method: Composition-based stats. Identities = 381/1109 (34%), Positives = 558/1109 (50%), Gaps = 62/1109 (5%) Query: 88 SWLRGAGLAAQIVTATDWATSPLGPLGQWSPTLRTSLNIALHSPLPSLLVWGTARQMLYN 147 S+L G G A ++ DWA +PLGP W L+T + + L S P L+VWG A LYN Sbjct: 6 SFLAGGGAAGALMRGLDWAATPLGPPETWPAALKTLVGVMLGSQQPMLIVWGEAHVTLYN 65 Query: 148 DAFAACIGTAHPAAFGARLSESALWRGAARICEAAIGAAFKGQQQQLGRVSLFPDAAAAA 207 D +A G HP A G E +W E + A+ G+ + ++ Sbjct: 66 DGYAPMCGARHPKALGRPFDE--VWHDIWDQVEPILSRAYAGEATHMEDITF---TMHRN 120 Query: 208 GTPDQWDLTCVPVWEDAADDQPAQVAGVLCTLVRSTGLDAA----LAHTDMLRDLMEQSP 263 G P++ T + VAG+ C +T A A + L EQ+P Sbjct: 121 GYPEE---THFAFGYTPVRGEDGTVAGMFCACSETTAAVRAGRQMQAERERFARLFEQAP 177 Query: 264 SFKAVVRGPQHVFERVNGAYFKLFGDRPVLGLPAREALPELLDENLYELLDRVYQTGQTY 323 SF AV+ GP HVF N AY L R +LG P R ALPE+ + +ELLD VY TG+++ Sbjct: 178 SFVAVLDGPHHVFAFANAAYRGLVAHRDILGKPVRAALPEVEGQGFFELLDEVYATGRSH 237 Query: 324 TERGARLFLRRAHETGFEGAVLDFVFQPIKGVDGQVAGIFIEGNDVTERF-----VAEER 378 T GA + L R E LDFV+QP++ G + G+F++G+DVTER +AE Sbjct: 238 TAHGAPVTLLRVPGGVPEQRFLDFVYQPMRDASGTITGVFVDGSDVTERITGNAALAESE 297 Query: 379 LRIVDRAGGIGIFEWFPVSGKLAVSDRFRRLWGLPAEGEVTSQQLVNMIDEEFHPN---L 435 R A + W V+ R W G+ +Q L E HP+ Sbjct: 298 ARFRTMADDAPVMMW--VTDADGACQYLNRRW-YEFTGQTEAQALGLGWLEAVHPDDRGW 354 Query: 436 GTSRIKEGGPRNPLEYTEYHITRPDGEQRWLARKGEVVQDDPRAGSR-----YVGVVFDV 490 R+ EY + R DG RW + PR + Y+G V D+ Sbjct: 355 SGETFLTANARHEGFSLEYRLRRRDGAYRW-----AIDTASPRFAADGRFLGYIGSVVDI 409 Query: 491 TSRKLMEQALAASEASVRANNAFVRQLLDSTDQGFFSIDREGIVTLCNAAFLKLLGYAGE 550 R+ E ALA SE +R ++S + G + D + G A E Sbjct: 410 EERRAAELALAESEERLRL-------AVESGEIGLWDFDPRAGTLFWPPRIKAMFGLAPE 462 Query: 551 KDVLGRSIHEVILTSADDGSGARGECAVLKAARDGVTTHVESEDFLRVDGSSFPVQYQAH 610 DV E + DD + A AA D T E+F V G+ +++ A Sbjct: 463 ADVTLEDFSEGL--HPDDRARV---TAAFAAALDPGTRAFYDEEFRTVGGADGTIRWVAA 517 Query: 611 P----VWQDGELQGALCTFIDLTERRRGMQALSWSENRLTAIFNQASVCFSELDLEGRYL 666 +G + + ID+T R+ + L + RL A+ + A+ +D Sbjct: 518 KGRGVFDAEGHCLRGVGSAIDITARKATEERLVEATRRLDAVLDNATQAIFMMDERQHCA 577 Query: 667 RVNQALCRMLGRTEAEMLQMTLADVTH---PDD--VPMNMTLFKRCIADGSSFTLEKRYL 721 +N+A R+ G T E L DV H PD P++ + + + E+ ++ Sbjct: 578 YMNRAAERLTGYTLEETRGQALHDVVHHTRPDGSPYPLHECPIDQAFPENNQEQGEEIFV 637 Query: 722 RPDGSAFWVSSDISRIVDGEGRPQAMIAVSTDITERRRAEDALRELNDTLEQRVVEEILE 781 DGS + V+ S I D G P + + +I RA+ L N +LEQ+V E Sbjct: 638 HRDGSFYPVAFTASPIRDEGGAPIGTVIEARNIEAELRAKAQLEAFNASLEQQVAARTAE 697 Query: 782 RSRAEAALRQMQKMEAVGQLTGGVAHDFNNVLQIIGGNLQLLQT---DPRLDDRSRQRVR 838 R E ALRQ QKMEAVGQLTGG+AHDFNN+L I G+L+LLQT RL + R V Sbjct: 698 LMRTEEALRQSQKMEAVGQLTGGLAHDFNNLLTGITGSLELLQTRLAQGRLTEIDRY-VN 756 Query: 839 IAIGAVDRGAKLSSQLLAFARRQPLQPRSINLERVVLNMDDLLRRAVGENIEISTVITHD 898 A GA R A L+ +LLAF+RRQ L P+ ++ R+V+ M++LLRR +G +I + V Sbjct: 757 AAQGAAKRAAALTHRLLAFSRRQTLDPKPTDVNRLVMGMEELLRRTIGPSITLEVVAAGG 816 Query: 899 LWNTMLDPNQVENLIINTAINSRDAMPNGGRLTLQIDNVQLSDPAFLSQADLPPGDYVEL 958 LW+ ++DP+Q+EN ++N IN+RDAMP+GGR+T++ N L D + DL PG Y+ L Sbjct: 817 LWSVLVDPSQLENALLNLCINARDAMPDGGRITIETANRWLDDRG-ARERDLDPGQYLSL 875 Query: 959 QISDNGAGMSPEVRERAFEPFFTTKREGEGTGLGLSMAYGFVKQSKGHISLHSEAGKGTT 1018 ++D G GMSP+V +AF+PFFTTK G+GTGLGLSM YGFV+QS G + ++SE G+GTT Sbjct: 876 CVTDTGTGMSPDVIAKAFDPFFTTKPIGQGTGLGLSMIYGFVRQSGGQVRIYSEVGQGTT 935 Query: 1019 IRIYFPRCIDQEVVIDDNRDMEV---RGGDETILVVEDDPNLQLTVIDTLSSLGYRVLKA 1075 + +Y PR D D+ ET+L+V+D+P +++ V + L LGY ++A Sbjct: 936 MCLYLPRHYGAAEEPDPAPDLAAAPRAEQGETVLIVDDEPTVRMLVTEVLEDLGYTAIEA 995 Query: 1076 DNGERALAILQSGIPVDLMFTDVVMPGSVPVTELARQARALLPEIEILFTSGYPRDAIVH 1135 +G L +LQS + +DL+ TDV +PG + ++A R L PE+++LF +GY +A V Sbjct: 996 ADGPSGLKVLQSDVRIDLLVTDVGLPGGMNGRQVADAGRVLRPELKVLFITGYAENAAVG 1055 Query: 1136 EGRLDAGVELLSKPYRINQLAQRIRQMLS 1164 G L+ G+++++KP+ + LA RI++M+S Sbjct: 1056 NGHLEPGMQVITKPFVMEVLAGRIKEMIS 1084 >ref|YP_002423327.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gb|ACK85399.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 1092 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 383/1117 (34%), Positives = 563/1117 (50%), Gaps = 76/1117 (6%) Query: 89 WLRGAGLAAQIVTATDWATSPLGPLGQWSPTLRTSLNIALHSPLPSLLVWGTARQMLYND 148 +L G G A ++ DWA +PLG W L+T + + L S P L+VWG A LYND Sbjct: 13 FLDGGGEAGALIRGIDWAATPLGSPETWPAALKTLVGVMLGSQQPMLIVWGEAHVTLYND 72 Query: 149 AFAACIGTAHPAAFGARLSESALWRGAARICEAAIGAAFKGQQQQLGRVSLFPDAAAAAG 208 +A G HP A G E +W + A+ G+ + ++L G Sbjct: 73 GYAPMCGARHPRALGQSFDE--VWHDIWDQVGPILSRAYAGEATHMDDIAL---TMHRNG 127 Query: 209 TPDQ--WDLTCVPV-WEDAADDQPAQVAGVLCTLVRSTGLDAA----LAHTDMLRDLMEQ 261 P++ + PV ED VAG+ C +T A A + L EQ Sbjct: 128 YPEETHFAFGYTPVRIEDGT------VAGMFCACSETTASVRAGRQMHAERERFARLFEQ 181 Query: 262 SPSFKAVVRGPQHVFERVNGAYFKLFGDRPVLGLPAREALPELLDENLYELLDRVYQTGQ 321 SPSF AV+ GP HVF N AY +L R VLG P REALPE+ + +ELLD V+ TG+ Sbjct: 182 SPSFVAVLDGPDHVFAFANAAYRQLIAHRDVLGRPVREALPEIEGQGFFELLDEVFSTGR 241 Query: 322 TYTERGARLFLRRAHETGFEGAVLDFVFQPIKGVDGQVAGIFIEGNDVTERF-----VAE 376 T+T GA + + R E LDFV+QP++ G + G+F++G+DVTER +AE Sbjct: 242 THTAHGAPVTILRVPGGVPERRFLDFVYQPMRDAAGTITGVFVDGSDVTERITGNAALAE 301 Query: 377 ERLRIVDRAGGIGIFEWFPVSGKLAVSDRFRRLWGLPAEGEVTSQQLVNMIDEEFHPN-- 434 R A + W V+G R W G+ +Q L E HP+ Sbjct: 302 SEARFRTMADDAPVMMW--VTGPDGACQYLNRRW-YDFTGQNEAQALGLGWLEAVHPDDR 358 Query: 435 -LGTSRIKEGGPRNPLEYTEYHITRPDGEQRWLARKGEVVQDDPRAGSR-----YVGVVF 488 R+ EY + R DG RW + PR + Y+G V Sbjct: 359 GWSGETFLRANARHEGFSLEYRLRRRDGVYRW-----AIDTASPRFAADGSFLGYIGSVV 413 Query: 489 DVTSRKLMEQALAASEASVRANNAFVRQLLDSTDQGFFSIDREGIVTLCNAAFLKLLGYA 548 D+ R+ E ALA SE +R ++S + G + D + G A Sbjct: 414 DIEERRAAELALAESEERLRL-------AVESGEIGLWDFDPRAGTLFWPPRIKAMFGLA 466 Query: 549 GEKDVLGRSIHEVILTSADDGSGARGECAVLKAAR---DGVTTHVESEDFL---RVDGSS 602 + D V L DG V A D V E+F R DG+ Sbjct: 467 PDAD--------VTLDDFADGLHPDDRARVTAAFAAALDPVARAFYDEEFRAIGRADGTV 518 Query: 603 FPVQYQAHPVWQ-DGELQGALCTFIDLTERRRGMQALSWSENRLTAIFNQASVCFSELDL 661 V + V+ +G + + ID+T R+ + L + RL A+ + A+ +D Sbjct: 519 RWVAAKGRGVFDAEGRCLRGVGSAIDITARKATEERLVEATRRLDAVLDNATQAIFMMDE 578 Query: 662 EGRYLRVNQALCRMLGRTEAEMLQMTLADVTH---PDD--VPMNMTLFKRCIADGSSFTL 716 +N+A R+ G + E L DV H PD P++ + + + Sbjct: 579 RQHCAYMNRAAERLTGYSLDETHGKALHDVVHHTRPDGSPYPLHECPIDQAFPENNQEQG 638 Query: 717 EKRYLRPDGSAFWVSSDISRIVDGEGRPQAMIAVSTDITERRRAEDALRELNDTLEQRVV 776 ++ ++ DGS + V+ S I D G P + + +I RA+ L N +LEQ+V Sbjct: 639 QEIFVHRDGSFYPVAFTASPIRDEGGTPIGTVIEARNIEGELRAKAQLEAFNASLEQQVA 698 Query: 777 EEILERSRAEAALRQMQKMEAVGQLTGGVAHDFNNVLQIIGGNLQLLQT---DPRLDDRS 833 E R E ALRQ QKMEAVGQLTGG+AHDFNN+L I G+L+LLQT R+ + Sbjct: 699 ARTAELMRTEEALRQSQKMEAVGQLTGGLAHDFNNLLTGITGSLELLQTRLAQGRITEID 758 Query: 834 RQRVRIAIGAVDRGAKLSSQLLAFARRQPLQPRSINLERVVLNMDDLLRRAVGENIEIST 893 R V A GA R A L+ +LLAF+RRQ L P+ ++ R+V+ M+DLLRR +G +I + Sbjct: 759 RY-VNAAQGAAKRAAALTHRLLAFSRRQTLDPKPTDVNRLVMGMEDLLRRTIGPSITLEV 817 Query: 894 VITHDLWNTMLDPNQVENLIINTAINSRDAMPNGGRLTLQIDNVQLSDPAFLSQADLPPG 953 V LW+ ++DP+Q+EN ++N IN+RDAMP+GGR+T++ N L D + DL PG Sbjct: 818 VAAGGLWSVLVDPSQLENALLNLCINARDAMPDGGRITIETANKWLDDRG-AKERDLDPG 876 Query: 954 DYVELQISDNGAGMSPEVRERAFEPFFTTKREGEGTGLGLSMAYGFVKQSKGHISLHSEA 1013 Y+ L ++D+G GMSP+V +AF+PFFTTK G+GTGLGLSM YGFV+QS G + ++SE Sbjct: 877 QYLSLCVTDSGTGMSPDVIAKAFDPFFTTKPIGQGTGLGLSMIYGFVRQSGGQVRIYSEV 936 Query: 1014 GKGTTIRIYFPR----CIDQEVVIDDNRDMEVRGGDETILVVEDDPNLQLTVIDTLSSLG 1069 G+GTT+ +Y PR + E D G ET+L+V+D+P +++ V + L LG Sbjct: 937 GQGTTMCLYLPRHYGAAEEPEAAPDLAAAPRAEQG-ETVLIVDDEPTVRMLVTEVLEDLG 995 Query: 1070 YRVLKADNGERALAILQSGIPVDLMFTDVVMPGSVPVTELARQARALLPEIEILFTSGYP 1129 Y ++A +G L +LQS + +DL+ TDV +PG + ++A R L P++++LF +GY Sbjct: 996 YTAIEAADGPAGLKVLQSDVRLDLLVTDVGLPGGMNGRQVADAGRVLRPDLKVLFITGYA 1055 Query: 1130 RDAIVHEGRLDAGVELLSKPYRINQLAQRIRQMLSGR 1166 +A V G L+ G+++++KP+ + LA RI++M++ R Sbjct: 1056 ENAAVGNGHLEPGMQVITKPFVMEVLAARIKEMINSR 1092 >ref|YP_002965559.1| sensor hybrid histidine kinase with multiple PAS/PAC and response regulator receiver domains [methylobacterium extorquens AM1] gb|ACS42282.1| putative sensor hybrid histidine kinase with multiple PAS/PAC and response regulator receiver domains [Methylobacterium extorquens AM1] Length = 1086 Score = 526 bits (1355), Expect = e-146, Method: Composition-based stats. Identities = 382/1117 (34%), Positives = 563/1117 (50%), Gaps = 76/1117 (6%) Query: 89 WLRGAGLAAQIVTATDWATSPLGPLGQWSPTLRTSLNIALHSPLPSLLVWGTARQMLYND 148 +L G G A ++ DWA +PLG W L+T + + L S P L+VWG A LYND Sbjct: 7 FLDGGGEAGALIRGIDWAATPLGSPEAWPAALKTLVGVMLGSQQPMLIVWGEAHVTLYND 66 Query: 149 AFAACIGTAHPAAFGARLSESALWRGAARICEAAIGAAFKGQQQQLGRVSLFPDAAAAAG 208 +A G HP A G E +W + A+ G+ + ++L G Sbjct: 67 GYAPMCGARHPRALGQAFDE--VWHDIWDQVGPILSRAYAGEGTHMDDIAL---TMHRNG 121 Query: 209 TPDQ--WDLTCVPV-WEDAADDQPAQVAGVLCTLVRSTGLDAA----LAHTDMLRDLMEQ 261 P++ + PV ED VAG+ C +T A A + L EQ Sbjct: 122 YPEETHFAFGYTPVRIEDGT------VAGMFCACSETTASVRAGRQMHAERERFARLFEQ 175 Query: 262 SPSFKAVVRGPQHVFERVNGAYFKLFGDRPVLGLPAREALPELLDENLYELLDRVYQTGQ 321 SPSF AV+ GP H F N AY +L R VLG P REALPE+ + +ELLD V+ TG+ Sbjct: 176 SPSFVAVLDGPDHAFAFANAAYRQLIAHRDVLGRPVREALPEIEGQGFFELLDDVFSTGR 235 Query: 322 TYTERGARLFLRRAHETGFEGAVLDFVFQPIKGVDGQVAGIFIEGNDVTERF-----VAE 376 T+T GA + + R E LDFV+QP++ G + G+F++G+DVTER +AE Sbjct: 236 THTAHGAPVTILRVPGGMPERRFLDFVYQPMRDAAGTITGVFVDGSDVTERITGNAALAE 295 Query: 377 ERLRIVDRAGGIGIFEWFPVSGKLAVSDRFRRLWGLPAEGEVTSQQLVNMIDEEFHPN-- 434 R A + W V+G R W G+ +Q L E HP+ Sbjct: 296 SEARFRTMADDAPVMMW--VTGPDGACQYLNRRW-YDFTGQNEAQALGLGWLEAVHPDDR 352 Query: 435 -LGTSRIKEGGPRNPLEYTEYHITRPDGEQRWLARKGEVVQDDPRAGSR-----YVGVVF 488 R+ EY + R DG RW + PR + Y+G V Sbjct: 353 GWSGDTFLRANARHEGFSLEYRLRRRDGVYRW-----AIDTASPRFAADGSFLGYIGSVV 407 Query: 489 DVTSRKLMEQALAASEASVRANNAFVRQLLDSTDQGFFSIDREGIVTLCNAAFLKLLGYA 548 D+ R+ E ALA SE +R ++S + G + D + G A Sbjct: 408 DIEERRAAELALAESEERLRL-------AVESGEIGLWDFDPRAGTLFWPPRIKAMFGLA 460 Query: 549 GEKDVLGRSIHEVILTSADDGSGARGECAVLKAAR---DGVTTHVESEDFL---RVDGSS 602 + D V L DG V A D V E+F R DG+ Sbjct: 461 PDAD--------VTLDDFADGLHPDDRARVTAAFAAALDPVARAFYDEEFRAIGRADGTV 512 Query: 603 FPVQYQAHPVWQ-DGELQGALCTFIDLTERRRGMQALSWSENRLTAIFNQASVCFSELDL 661 V + V+ +G + + ID+T R+ + L + RL A+ + A+ +D Sbjct: 513 RWVAAKGRGVFDAEGRCLRGVGSAIDITARKATEERLVEATRRLDAVLDNATQAIFMMDE 572 Query: 662 EGRYLRVNQALCRMLGRTEAEMLQMTLADVTH---PDD--VPMNMTLFKRCIADGSSFTL 716 +N+A R+ G + E L DV H PD P++ + + + Sbjct: 573 RQHCAYMNRAAERLTGYSLDETHGKALHDVVHHTRPDGSPYPLHECPIDQAFPENNQEQG 632 Query: 717 EKRYLRPDGSAFWVSSDISRIVDGEGRPQAMIAVSTDITERRRAEDALRELNDTLEQRVV 776 ++ ++ DGS + V+ S I D G P + + +I RA+ L N +LEQ+V+ Sbjct: 633 QEIFVHRDGSFYPVAFTASPIRDEGGTPIGTVIEARNIEGELRAKAQLEAFNASLEQQVL 692 Query: 777 EEILERSRAEAALRQMQKMEAVGQLTGGVAHDFNNVLQIIGGNLQLLQT---DPRLDDRS 833 E R E ALRQ QKMEAVGQLTGG+AHDFNN+L I G+L+LLQT R+ + Sbjct: 693 ARTAELMRTEEALRQSQKMEAVGQLTGGLAHDFNNLLTGITGSLELLQTRLAQGRITEID 752 Query: 834 RQRVRIAIGAVDRGAKLSSQLLAFARRQPLQPRSINLERVVLNMDDLLRRAVGENIEIST 893 R V A GA R A L+ +LLAF+RRQ L P+ ++ R+V+ M+DLLRR +G +I + Sbjct: 753 RY-VNAAQGAAKRAAALTHRLLAFSRRQTLDPKPTDVNRLVMGMEDLLRRTIGPSITLEV 811 Query: 894 VITHDLWNTMLDPNQVENLIINTAINSRDAMPNGGRLTLQIDNVQLSDPAFLSQADLPPG 953 V LW+ ++DP+Q+EN ++N IN+RDAMP+GGR+T++ N L D + DL PG Sbjct: 812 VAAGGLWSVLVDPSQLENALLNLCINARDAMPDGGRITIETANKWLDDRG-AKERDLDPG 870 Query: 954 DYVELQISDNGAGMSPEVRERAFEPFFTTKREGEGTGLGLSMAYGFVKQSKGHISLHSEA 1013 Y+ L ++D+G GMSP+V +AF+PFFTTK G+GTGLGLSM YGFV+QS G + ++SE Sbjct: 871 QYLSLCVTDSGTGMSPDVIAKAFDPFFTTKPIGQGTGLGLSMIYGFVRQSGGQVRIYSEV 930 Query: 1014 GKGTTIRIYFPR----CIDQEVVIDDNRDMEVRGGDETILVVEDDPNLQLTVIDTLSSLG 1069 G+GTT+ +Y PR + E D G ET+L+V+D+P +++ V + L LG Sbjct: 931 GQGTTMCLYLPRHYGAAEEPEAAPDLAAAPRAEQG-ETVLIVDDEPTVRMLVTEVLEDLG 989 Query: 1070 YRVLKADNGERALAILQSGIPVDLMFTDVVMPGSVPVTELARQARALLPEIEILFTSGYP 1129 Y ++A +G L +LQS + +DL+ TDV +PG + ++A R L P++++LF +GY Sbjct: 990 YTAIEAADGPAGLKVLQSDVRLDLLVTDVGLPGGMNGRQVADAGRVLRPDLKVLFITGYA 1049 Query: 1130 RDAIVHEGRLDAGVELLSKPYRINQLAQRIRQMLSGR 1166 +A V G L+ G+++++KP+ + LA RI++M++ R Sbjct: 1050 ENAAVGNGHLEPGMQVITKPFVMEVLAARIKEMINSR 1086