BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4839.p (414 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775900.1| two component sensor histidine kinase [Herba... 205 1e-50 ref|YP_004022318.1| sensory transduction protein kinase [Burkhol... 178 2e-42 ref|ZP_03129745.1| histidine kinase [Chthoniobacter flavus Ellin... 169 8e-40 ref|YP_001615008.1| hybrid histidine kinase [Sorangium cellulosu... 166 5e-39 ref|YP_004620230.1| atypical hybrid histidine kinase [Ramlibacte... 159 6e-37 >ref|YP_003775900.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ63992.1| two component sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 289 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 132/289 (45%), Positives = 170/289 (58%), Gaps = 55/289 (19%) Query: 91 LRIIEALRAGIADVLPKTSDYLDYLAQAVERVLGQHALQRQTLEAARLQQQERQTLLQAE 150 +RIIEALRAG+ADVLPKTSDYLD+L +AV RVL + + Sbjct: 1 MRIIEALRAGVADVLPKTSDYLDHLPEAVARVL------------------------ETQ 36 Query: 151 RTARAEGQRASRIKEQFVATLSQELRPPLNAILGWTDYLLRDAADAANLHKGLQVIERHA 210 R AR + +R+K++F+ATLS ELR PLNAI+GWT YLL D +DA L KGLQVIER+A Sbjct: 37 RAARRQADSVTRLKDEFLATLSHELRTPLNAIVGWTQYLLNDHSDADRLVKGLQVIERNA 96 Query: 211 RAQSQLVEELLDMNRILSGKLRIATEQITLEEVMADAVEEVRSAAVAKTIQIDATSPASG 270 R Q+Q+VE+LLDM+R+L+GKLR+ T + L V +A+ VR AA A+ I++ G Sbjct: 97 RLQAQMVEDLLDMSRMLAGKLRLETRPMDLASVAEEAIAAVRPAAEARQIELHPALGQGG 156 Query: 271 VVLGDRTRLRQILCKLLINAIRFTPPQGRVVLCSHQRQDEIELEVSDTGR---------- 320 V+LGD RL+Q++ LL+NAI+FTP QGRV L Q D + LEVSD GR Sbjct: 157 VILGDPARLQQVVWNLLMNAIKFTPRQGRVSLSLRQHDDTVALEVSDNGRGIKGEFLGSV 216 Query: 321 ---------------------GLAPALLAHLLEPDGPSQRRCRAGPGLG 348 GL A+ HL+E G R AGPG+G Sbjct: 217 FDRFTQEDVSTGSTGSTASGLGLGLAIARHLVELHGGQIRAASAGPGMG 265 >ref|YP_004022318.1| sensory transduction protein kinase [Burkholderia rhizoxinica HKI 454] emb|CBW76799.1| Sensory transduction protein kinase (EC 2.7.3.-) [Burkholderia rhizoxinica HKI 454] Length = 685 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 106/219 (48%), Positives = 146/219 (66%), Gaps = 3/219 (1%) Query: 133 LEAARLQQQERQTLLQAERTARAEGQRASRIKEQFVATLSQELRPPLNAILGWTDYLLRD 192 ++ +L QER+ LL ER AR+E +RASR+K++FVATLS ELR PLNAI+GW LLRD Sbjct: 276 IDDQKLAAQEREHLLANERQARSEAERASRLKDEFVATLSHELRTPLNAIVGWAQLLLRD 335 Query: 193 AADAANLHKGLQVIERHARAQSQLVEELLDMNRILSGKLRIATEQITLEEVMADAVEEVR 252 A+D A + KGLQVI R+AR QSQ++++LLDM+RI++GK+R+ +++ L +V+ D + V+ Sbjct: 336 ASDPARVEKGLQVIHRNARLQSQMIDDLLDMSRIMAGKVRLNVQRVELVDVITDVIATVQ 395 Query: 253 SAAVAKTIQIDATSPASGVVLGDRTRLRQILCKLLINAIRFTPPQGRVVLCSHQRQDEIE 312 AA AK +++ A VV GD RL+QI+ LL NAI+FTP +GRV + E Sbjct: 396 LAADAKELRVMPVLGAPAVVNGDPARLQQIIWNLLTNAIKFTPRRGRVAVTLTSGDGEAR 455 Query: 313 LEVSDTGRGLAPALLAHLLE---PDGPSQRRCRAGPGLG 348 L VSDTG G+ A L H+ E + S R G GLG Sbjct: 456 LVVSDTGCGIREAFLPHVFERFRQEDASTTRQFGGLGLG 494 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 72/146 (49%), Positives = 101/146 (69%), Gaps = 4/146 (2%) Query: 9 LVLEDDEGLLALAGRVLRKQGYRVTAVADAESAQAAV----QQELPDLLIVDYNLQALDS 64 L+++DDEGLL+LA R L + G+ V + ++A+A + Q+ PD+L+VDY L ++ Sbjct: 26 LIIDDDEGLLSLARRALARAGFDVVTLTSTQAARAWLDGRGQERWPDVLVVDYVLGTAET 85 Query: 65 GLDFFRSLRSAGVEIPAIMVSGVSDELRIIEALRAGIADVLPKTSDYLDYLAQAVERVLG 124 GLDF RSLR G +PAI+ +G +DE R+IEALR+G+ADV+PKTSDYLDYL QA+ERVL Sbjct: 86 GLDFLRSLRMQGTMLPAILCTGFADETRVIEALRSGVADVVPKTSDYLDYLPQAIERVLA 145 Query: 125 QHALQRQTLEAARLQQQERQTLLQAE 150 Q QR+ EA ++ +E AE Sbjct: 146 QKRAQREIAEAELVRARELHYRTLAE 171 >ref|ZP_03129745.1| histidine kinase [Chthoniobacter flavus Ellin428] gb|EDY19734.1| histidine kinase [Chthoniobacter flavus Ellin428] Length = 529 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 111/330 (33%), Positives = 178/330 (53%), Gaps = 28/330 (8%) Query: 8 VLVLEDDEGLLALAGRVLRKQGYRVTAVADAESAQAAVQQELPDLLIVDYNLQALDSGLD 67 +LVLEDD G+ L L + GY V + A A + DLL++DY L +GL+ Sbjct: 10 ILVLEDDPGIGRLQRLQLERAGYVVELTTNTADAHARLAAHRIDLLMLDYQLSEPTNGLE 69 Query: 68 FFRSLRSAGVEIPAIMVSGVSDELRIIEALRAGIADVLPKTSDYLDYLAQAVERVLGQHA 127 F+RSL+ E+PAI+V+G DE RIIEA+RAG+ D +PKT ++++ +A V+RV+ Q Sbjct: 70 FYRSLQQESREVPAILVTGYGDEARIIEAMRAGVRDFIPKTPNFIELVAPTVDRVMKQVM 129 Query: 128 LQRQTLEAARLQQQERQTLLQAERTARAEGQRASRIKEQFVATLSQELRPPLNAILGWTD 187 +RQ LEA + ASR K+ F+ATLS ELR PL +L Sbjct: 130 AERQLLEA----------------------EAASRAKDNFIATLSHELRTPLTPVLALVS 167 Query: 188 YLLRDAADAANLHKGLQVIERHARAQSQLVEELLDMNRILSGKLRIATEQITLEEVMADA 247 L RD ++ + + I R+ +++L++++LD+ RI GKL + E I + ++ A Sbjct: 168 ALQRDGRLPQDVQEDMATIFRNIELEARLIDDMLDITRIAKGKLELQFETIDIRPIIEHA 227 Query: 248 VEEVRSAAVAKTIQIDATSPASG--VVLGDRTRLRQILCKLLINAIRFTPPQGRVVLCSH 305 ++ + A+ + + + G V D RL Q+ +L NAI+FTP G++ + S Sbjct: 228 IKTCCAHEAAEKMIVCHETLVDGGHVARVDAARLTQVFWNVLKNAIKFTPVGGQIFIRSR 287 Query: 306 QRQDE----IELEVSDTGRGLAPALLAHLL 331 + + + +EV D+G G+AP +L + Sbjct: 288 REEANGAHWLVVEVEDSGIGIAPHILPRVF 317 >ref|YP_001615008.1| hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] emb|CAN94528.1| Hybrid Histidine Kinase [Sorangium cellulosum 'So ce 56'] Length = 961 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 99/223 (44%), Positives = 141/223 (63%), Gaps = 6/223 (2%) Query: 131 QTLEAARLQQQERQTLLQAERTARAEGQRASRIKEQFVATLSQELRPPLNAILGWTDYLL 190 + + A RL ++ERQ LL++ER AR E +R SR+K+ FVATLS ELR P+NAILGW L Sbjct: 527 EDVTAERLAEEERQKLLESERAARDEAERVSRVKDDFVATLSHELRSPINAILGWARILR 586 Query: 191 RDAADAANLHKGLQVIERHARAQSQLVEELLDMNRILSGKLRIATEQITLEEVMADAVEE 250 A + L +GL+VIER+AR Q+ +V ELLDM+RI+SGKLR+ + + L V+ A+E Sbjct: 587 GRAPEPPTLARGLEVIERNARLQADMVSELLDMSRIVSGKLRLDVQPVDLPSVIRSALEA 646 Query: 251 VRSAAVAKTIQIDAT-SPASGVVLGDRTRLRQILCKLLINAIRFTPPQGRVVLCSHQRQD 309 ++ AA K I + ++ P + + GD R+ Q++ LL NA++FTPP GR+ + + Sbjct: 647 IQLAAETKGIAVASSIDPEASSLRGDPARIHQVVWNLLSNAVKFTPPGGRIDVALRRAGA 706 Query: 310 EIELEVSDTGRGLAPALLAHLLE----PDGPSQRRCRAGPGLG 348 L V+DTG G+AP L HL E D S R+ G G+G Sbjct: 707 HAALSVTDTGMGIAPQFLPHLFERFRQADASSTRK-HGGLGIG 748 >ref|YP_004620230.1| atypical hybrid histidine kinase [Ramlibacter tataouinensis TTB310] gb|AEG94211.1| candidate histidine kinase, atypical hybrid [Ramlibacter tataouinensis TTB310] Length = 533 Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 127/348 (36%), Positives = 194/348 (55%), Gaps = 13/348 (3%) Query: 8 VLVLEDDEGLLALAGRVLRKQ--GYRVTAVADAESAQAAVQQELPDLLIVDYNLQALDSG 65 +LVL+D+ ALA R LR + R V A Q D ++ DY L+ D G Sbjct: 7 ILVLDDNPDDRALAVRALRAEFPEARYLEVGTESGFHQAFAQGGFDAVVTDYQLKWSD-G 65 Query: 66 LDFFRSLRSAGVEIPAIMVSGVSDELRIIEALRAGIADVLPKTSDYLDYLAQAVERVLGQ 125 L +++R + E+P +M + E A+R G D + K +++ L AV L Sbjct: 66 LQVLKAIRRSYPEVPVVMFTNTGTEEVCAAAMREGAHDYILKKANHYVMLPAAVRTGLAV 125 Query: 126 HALQRQTLEAARLQQQERQTLLQAERTARAEGQRASRIKEQFVATLSQELRPPLNAILGW 185 +R R QQ Q L +ER AR +RA R+K++F+ATLS ELR PLNAILGW Sbjct: 126 VNARR----VVREQQAALQAALASEREARERAERADRLKDEFLATLSHELRTPLNAILGW 181 Query: 186 TDYLLRDAADAANLHKGLQVIERHARAQSQLVEELLDMNRILSGKLRIATEQITLEEVMA 245 T L R +A + +G +VIER+ + Q++L+E+LLD++ I+SGKLR+ T + L V+ Sbjct: 182 TQVLQRAPENAETVAQGARVIERNVKTQARLIEDLLDVSSIISGKLRLETMPVELLPVVE 241 Query: 246 DAVEEVRSAAVAKTIQIDAT-SPASGVVLGDRTRLRQILCKLLINAIRFTPPQGRVVLCS 304 A+E V A +K ++++ +G VLGD TRL+Q+ +L+NA++FTP GRV + Sbjct: 242 AALEAVAPTAQSKGVRLERRLDTGAGPVLGDATRLQQVFWNILVNAVKFTPSGGRVRVAL 301 Query: 305 HQRQDEIELEVSDTGRGLAPALLAHLL----EPDGPSQRRCRAGPGLG 348 + + ++ ++DTG G++P L H+ + DG + RR G GLG Sbjct: 302 ERVGEMAQVTITDTGEGISPDFLPHMFDRLRQADGSTTRR-HGGLGLG 348