BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4838.p (154 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775901.1| two component response regulator protein [He... 238 2e-61 ref|YP_004029458.1| Two-component response regulator [Burkholder... 213 1e-53 ref|YP_004228220.1| response regulator receiver protein [Burkhol... 212 1e-53 ref|ZP_03269446.1| response regulator receiver protein [Burkhold... 206 7e-52 ref|YP_001857226.1| response regulator receiver protein [Burkhol... 206 8e-52 >ref|YP_003775901.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63993.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 121/142 (85%), Positives = 129/142 (90%) Query: 1 MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFQRLRDGQEALDHFFGGELGRTDLQQ 60 MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGF RLRDGQEALD+ F + RT+LQQ Sbjct: 1 MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQRSRTELQQ 60 Query: 61 VVVLLDVNMPRVNGVEVLRRMKQDAATAAIPVIMLTTTDDPREIAHCYEVGCNVYITKPV 120 +VVLLDVNMPRVNGVEVLRR+K D +AIPVIMLTTTDDPREI CYE GCNVYITKPV Sbjct: 61 LVVLLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCYEYGCNVYITKPV 120 Query: 121 EYDDFIEAVRRLGFFLQVVKLP 142 EY+DFIEA+RRLGFFLQVVKLP Sbjct: 121 EYEDFIEAIRRLGFFLQVVKLP 142 >ref|YP_004029458.1| Two-component response regulator [Burkholderia rhizoxinica HKI 454] emb|CBW75314.1| Two-component response regulator [Burkholderia rhizoxinica HKI 454] Length = 153 Score = 213 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 108/148 (72%), Positives = 125/148 (84%), Gaps = 3/148 (2%) Query: 1 MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFQRLRDGQEALDHFFGGE-LGRTDLQ 59 M ++V+IIL+EDDDGHA LVE+NLRRAGL NGF+RL DG +ALD+FFG E LG DL+ Sbjct: 5 MTIGETVSIILIEDDDGHATLVERNLRRAGLTNGFKRLSDGHQALDYFFGPEPLG--DLR 62 Query: 60 QVVVLLDVNMPRVNGVEVLRRMKQDAATAAIPVIMLTTTDDPREIAHCYEVGCNVYITKP 119 VVLLD+ MPRV+GVEVLRR+K+ TA++PVI+LTTTDDPREI CYE+GCNVYITKP Sbjct: 63 NCVVLLDLKMPRVDGVEVLRRLKESPQTASLPVIVLTTTDDPREIERCYELGCNVYITKP 122 Query: 120 VEYDDFIEAVRRLGFFLQVVKLPPSGAP 147 VEYD FIEAVRRLGFFLQVVKLP S P Sbjct: 123 VEYDAFIEAVRRLGFFLQVVKLPCSVRP 150 >ref|YP_004228220.1| response regulator receiver protein [Burkholderia sp. CCGE1001] gb|ADX55160.1| response regulator receiver protein [Burkholderia sp. CCGE1001] Length = 161 Score = 212 bits (539), Expect = 1e-53, Method: Composition-based stats. Identities = 105/152 (69%), Positives = 123/152 (80%), Gaps = 10/152 (6%) Query: 1 MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFQRLRDGQEALDHFFGGELG------ 54 M+ ++V+I+L+EDDDGHA LVE+NLRRAG+ NGF R RDGQ+ALD+FFGGE G Sbjct: 1 MSHGETVSIVLIEDDDGHATLVERNLRRAGISNGFVRFRDGQQALDYFFGGEAGGESAPG 60 Query: 55 ----RTDLQQVVVLLDVNMPRVNGVEVLRRMKQDAATAAIPVIMLTTTDDPREIAHCYEV 110 DL+ VVLLD+ MPRV+G EVLRR+K+ TA +PVI+LTTTDDPREIA CYE+ Sbjct: 61 AHPQPEDLRNSVVLLDLKMPRVDGFEVLRRLKESPQTAPVPVIVLTTTDDPREIARCYEL 120 Query: 111 GCNVYITKPVEYDDFIEAVRRLGFFLQVVKLP 142 GCNVYITKPVEYD FIEAVRRLGFFLQVVKLP Sbjct: 121 GCNVYITKPVEYDAFIEAVRRLGFFLQVVKLP 152 >ref|ZP_03269446.1| response regulator receiver protein [Burkholderia sp. H160] gb|EDZ98963.1| response regulator receiver protein [Burkholderia sp. H160] Length = 163 Score = 206 bits (525), Expect = 7e-52, Method: Composition-based stats. Identities = 104/156 (66%), Positives = 120/156 (76%), Gaps = 13/156 (8%) Query: 1 MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFQRLRDGQEALDHFFGGELG------ 54 M Q+V+I+L+EDDDGHA LVE+NLRRAG+ NGF R RDGQ+ALD+FFG Sbjct: 1 MNHAQTVSIVLIEDDDGHATLVERNLRRAGISNGFMRFRDGQQALDYFFGPAPAQPLTDA 60 Query: 55 -------RTDLQQVVVLLDVNMPRVNGVEVLRRMKQDAATAAIPVIMLTTTDDPREIAHC 107 R +L VVLLD+ MPRV+G EVLRR+K+ TAA+PVI+LTTTDDPREIA C Sbjct: 61 DGHPYPPRENLANFVVLLDLKMPRVDGFEVLRRLKEAPETAAVPVIVLTTTDDPREIARC 120 Query: 108 YEVGCNVYITKPVEYDDFIEAVRRLGFFLQVVKLPP 143 YE+GCNVYI KPVEYD FIEAVRRLGFFLQVVKLPP Sbjct: 121 YELGCNVYICKPVEYDAFIEAVRRLGFFLQVVKLPP 156 >ref|YP_001857226.1| response regulator receiver protein [Burkholderia phymatum STM815] gb|ACC70180.1| response regulator receiver protein [Burkholderia phymatum STM815] Length = 162 Score = 206 bits (525), Expect = 8e-52, Method: Composition-based stats. Identities = 105/151 (69%), Positives = 120/151 (79%), Gaps = 9/151 (5%) Query: 2 ATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFQRLRDGQEALDHFFG---------GE 52 A +SV I+LVEDDDGHA LVE+NLRRAG+ NGF RL DGQ+ALD+FFG G Sbjct: 5 AIGKSVGIVLVEDDDGHATLVERNLRRAGISNGFVRLADGQQALDYFFGEPCAGDRTDGR 64 Query: 53 LGRTDLQQVVVLLDVNMPRVNGVEVLRRMKQDAATAAIPVIMLTTTDDPREIAHCYEVGC 112 R +L VVLLD+ MPRV+G EVLRR+K +TA++PVI+LTTTDDPREI CYE+GC Sbjct: 65 PSRDELANYVVLLDLKMPRVDGFEVLRRLKASPSTASMPVIVLTTTDDPREIERCYELGC 124 Query: 113 NVYITKPVEYDDFIEAVRRLGFFLQVVKLPP 143 NVYITKPVEYD FIEAVRRLGFFLQVVKLPP Sbjct: 125 NVYITKPVEYDAFIEAVRRLGFFLQVVKLPP 155