BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4837.p (536 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775902.1| two component sensor histidine kinase [Herba... 718 0.0 ref|YP_004022319.1| sensory transduction protein kinase [Burkhol... 451 e-124 ref|ZP_03270968.1| histidine kinase [Burkholderia sp. H160] >gi|... 450 e-124 ref|ZP_06841559.1| histidine kinase [Burkholderia sp. Ch1-1] >gi... 447 e-123 ref|YP_001895236.1| histidine kinase [Burkholderia phytofirmans ... 446 e-123 >ref|YP_003775902.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ63994.1| two component sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 535 Score = 718 bits (1853), Expect = 0.0, Method: Composition-based stats. Identities = 377/532 (70%), Positives = 442/532 (83%) Query: 3 MRLLTKGLLIVAIPSLFEVLLLGALFKFQADAEDAEGWASHSLQVMNKAAELREPMLLEA 62 MRLLTKGLLIVAIP LFE++LL ALFK QADA DAE WA+HS +V+NKAA++REP+LLE+ Sbjct: 1 MRLLTKGLLIVAIPGLFEIVLLAALFKSQADAADAERWAAHSAEVINKAADVREPLLLES 60 Query: 63 ARVRNAVLLDLPDTLSRGDLWADIEVKTGELARLVADNASQSAAVRTVHESIASYRSWDD 122 AR+RNA+++D P +SR +LW D+E+K G+LARLV+DN QS +V+ + E + +R W D Sbjct: 61 ARIRNAIIIDDPSPISRPELWTDLEIKLGDLARLVSDNPEQSHSVQALRELVGQFRVWAD 120 Query: 123 SARERLMRGQRDDLIRQLRDEQGPHRLSTFLNLLDNFVAEERRLGAERSERLQAARRSQT 182 SARER+ RGQRD+L+RQLRDEQGPHRLS FLN LD F+ EER LG+ R++ LQ+AR++QT Sbjct: 121 SARERMQRGQRDELVRQLRDEQGPHRLSDFLNRLDGFLNEERHLGSLRNQALQSARQTQT 180 Query: 183 WLLILAVLGSIVTAALASLAFTRSISRRIAVFITNAQRLADGQTLAARVGGNDEICQLDD 242 LI AV+GSI+ AALAS+AFTRSI RI+V I NA+RLADG LAARV G+DEI LDD Sbjct: 181 AWLIAAVIGSILAAALASVAFTRSIGGRISVLIVNARRLADGLPLAARVKGHDEISLLDD 240 Query: 243 ALHRSSERLAEAARQALGYREELEQRARELADVNHDLRQQTQDNEMFIYSVSHDLRSPLV 302 ALHRSSERL EA++Q+ YR +LE+RAREL ++N DL QQTQDNEMFIYSVSHDLRSPLV Sbjct: 241 ALHRSSERLQEASQQSEQYRSQLERRARELTELNADLLQQTQDNEMFIYSVSHDLRSPLV 300 Query: 303 NLQGFSKEITHATRDLLDEVDRLALPEPDRQRLRTLVEEDIHTSLRFIQNAVTRSAGIID 362 NLQGFSKEI HAT DLL+ V L +P+ D+ +LR++V +DI +LRFIQNAVTRSAGIID Sbjct: 301 NLQGFSKEIGHATTDLLNAVQALPVPDADKAKLRSVVADDIQPALRFIQNAVTRSAGIID 360 Query: 363 AMLRLSRAGRVEYQPVMLDMHAIVTRIVAAMSGSIRAKSARVEIEADLPPAYGDPTSVEQ 422 +MLRLSRAGRVEYQPVMLDM+ I RIVAAMSGSIR K A VE+ +LPPA+GDPT++EQ Sbjct: 361 SMLRLSRAGRVEYQPVMLDMNVIAQRIVAAMSGSIRDKGAVVEVAPELPPAFGDPTAIEQ 420 Query: 423 VLGNLVGNAVNYLDPGRPGHITIGHVPQADSVVAAPSLVTYFVRDNGLGIPAAYMDKMFI 482 VLGNLVGNAVNYLDP RPG ITI H+ + P Y VRDNGLGIP AYM KMFI Sbjct: 421 VLGNLVGNAVNYLDPARPGRITIDHLREEGGAATGPETNVYVVRDNGLGIPPAYMHKMFI 480 Query: 483 AFQRLHGNAAKGEGIGLALVKRVVERHGGRIWVESVEGQGSCFYVALPARPP 534 AFQRLHGNAA GEGIGLALVKRVVERHGGRIWVES EGQGS FYVALPARPP Sbjct: 481 AFQRLHGNAAPGEGIGLALVKRVVERHGGRIWVESTEGQGSSFYVALPARPP 532 >ref|YP_004022319.1| sensory transduction protein kinase [Burkholderia rhizoxinica HKI 454] emb|CBW76800.1| Sensory transduction protein kinase (EC 2.7.3.-) [Burkholderia rhizoxinica HKI 454] Length = 638 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 257/528 (48%), Positives = 353/528 (66%), Gaps = 4/528 (0%) Query: 3 MRLLTKGLLIVAIPSLFEVLLLGALFKFQADAEDAEGWASHSLQVMNKAAELREPMLLEA 62 MRL+TKGLL++AIPSL E+ LL + + QA+A +AE WA S +V+++A + +P+L++A Sbjct: 56 MRLITKGLLLIAIPSLVELGLLVGVMRTQAEALEAEQWAVRSKEVLSQATAVLDPVLVDA 115 Query: 63 ARVRNAVLLDLPDTLSRGDLWADIEVKTGELARLVADNASQSAAVRTVHESIASYRSWDD 122 R+R AV+ + W +I+ + L LVADN Q + +S +YR W + Sbjct: 116 VRMRGAVIDGYGQVWTPPSQWGEIDRRINRLIELVADNPLQVERAVQIRQSAQAYRQWSE 175 Query: 123 SARERLMRGQRDDLIRQLRDEQGPHRLSTFLNLLDNFVAEERRLGAERSERLQAARRSQT 182 ++E L GQ+ ++ + R+ +G + F + EE RL + R+ER+ ARR Q Sbjct: 176 RSQELLRHGQQAGVVARFREFKGHDIVDYFRAQVAALQQEEMRLDSVRTERIAEARRMQQ 235 Query: 183 WLLILAVLGSIVTAALASLAFTRSISRRIAVFITNAQRLADGQTLAARVGGNDEICQLDD 242 LL+ AV+ SI+T A+A FT S+ RR+ N ++LA+ LA + G+DEI +LD Sbjct: 236 VLLVSAVIASIITGAIAVYVFTSSVRRRLRRLADNTKQLANNAPLAPMLEGDDEIAELDL 295 Query: 243 ALHRSSERLAEAARQALGYREELEQRARELADVNHDLRQQTQDNEMFIYSVSHDLRSPLV 302 ALH++S RL EA R YR +L +A EL +N LR++TQ+NEMFIYSVSHDLR+PLV Sbjct: 296 ALHQTSRRLLEAERIESRYRSDLAHQAEELGTMNEHLRERTQENEMFIYSVSHDLRAPLV 355 Query: 303 NLQGFSKEITHATRDLLDEVDRLALPEPDRQRLRTLVEEDIHTSLRFIQNAVTRSAGIID 362 NLQGFS+E++ A + + + R L + R+RL +V++DI +LRF+Q AV RSA IID Sbjct: 356 NLQGFSQELSLACDSVREILARSTLTDTQRRRLSRIVDDDIAEALRFLQTAVMRSASIID 415 Query: 363 AMLRLSRAGRVEYQPVMLDMHAIVTRIVAAMSGSIRAKSARVEIEADLPPAYGDPTSVEQ 422 A+LRLSRAGRVEY+P +D+ A+++R+V AM SI+++ V+I LP A+GDPT+VEQ Sbjct: 416 ALLRLSRAGRVEYRPQQVDVQAVMSRVVDAMRDSIKSRGVTVKIHP-LPSAWGDPTAVEQ 474 Query: 423 VLGNLVGNAVNYLDPGRPGHITIGHVPQADSVVAAPSLVTYFVRDNGLGIPAAYMDKMFI 482 V NLV NAVNYLDP RPG I IG P V SL Y+VRDNG GIPA+ + K+F Sbjct: 475 VFANLVSNAVNYLDPSRPGEIEIGTRPNP---VGVHSLRIYYVRDNGYGIPASALPKLFT 531 Query: 483 AFQRLHGNAAKGEGIGLALVKRVVERHGGRIWVESVEGQGSCFYVALP 530 AFQRLHG A KGEGIGLALV+RVVERHGG +W ES EG GS FY++LP Sbjct: 532 AFQRLHGGAVKGEGIGLALVRRVVERHGGNVWAESSEGIGSTFYLSLP 579 >ref|ZP_03270968.1| histidine kinase [Burkholderia sp. H160] gb|EDZ97457.1| histidine kinase [Burkholderia sp. H160] Length = 534 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 262/528 (49%), Positives = 348/528 (65%), Gaps = 4/528 (0%) Query: 3 MRLLTKGLLIVAIPSLFEVLLLGALFKFQADAEDAEGWASHSLQVMNKAAELREPMLLEA 62 MRL TKGLL++AIP++FE+ LL L K QADA AE WA S +V+ + + +P+L E+ Sbjct: 1 MRLTTKGLLLIAIPAVFELALLSGLMKAQADATLAERWAMDSEEVLRQTTGILDPVLSES 60 Query: 63 ARVRNAVLLDLPDTLSRGDLWADIEVKTGELARLVADNASQSAAVRTVHESIASYRSWDD 122 +R AVL + + +W D++ + +LA LVADN +Q V V +S+ +YR W D Sbjct: 61 VALRGAVLANDTRFTTPVAVWVDVDRRIDQLAELVADNPAQVERVVEVRQSVQAYRQWSD 120 Query: 123 SARERLMRGQRDDLIRQLRDEQGPHRLSTFLNLLDNFVAEERRLGAERSERLQAARRSQT 182 ++ L G+R ++I + D L F + F EERRL RS + AAR Q Sbjct: 121 RIQDMLHAGRRGEIIERFHDLTQTDVLDRFRLEVTAFQTEERRLDMARSNTVAAARERQQ 180 Query: 183 WLLILAVLGSIVTAALASLAFTRSISRRIAVFITNAQRLADGQTLAARVGGNDEICQLDD 242 L++ A LGS++ ALA FTR + R+A+ NA RLA + LA G+DEI +LD Sbjct: 181 TLIVAAALGSLLFVALAVWMFTRGVRGRLALLSDNAGRLAGNEPLAPIGAGHDEIARLDL 240 Query: 243 ALHRSSERLAEAARQALGYREELEQRARELADVNHDLRQQTQDNEMFIYSVSHDLRSPLV 302 LH +S RL EA R + +LE+RA EL +N LRQQTQ+NEMFIYSVSHDLR+PLV Sbjct: 241 TLHETSRRLLEAERIEARFHADLERRAAELVRINETLRQQTQENEMFIYSVSHDLRAPLV 300 Query: 303 NLQGFSKEITHATRDLLDEVDRLALPEPDRQRLRTLVEEDIHTSLRFIQNAVTRSAGIID 362 NLQGFSKE+ A +L + V +L R+R+ +V+EDI +L ++Q AV R++ IID Sbjct: 301 NLQGFSKELIRACDELREAVRDSSLAMSTRERIERIVDEDIGEALHYLQTAVLRASHIID 360 Query: 363 AMLRLSRAGRVEYQPVMLDMHAIVTRIVAAMSGSIRAKSARVEIEADLPPAYGDPTSVEQ 422 A+LRLSR GRVEY+ +D+H IV R+V AM GSIRA+ ARV + +LP +GDPT++EQ Sbjct: 361 ALLRLSRVGRVEYRRQKVDVHDIVQRVVDAMQGSIRARRARVTV-GELPAVWGDPTALEQ 419 Query: 423 VLGNLVGNAVNYLDPGRPGHITIGHVPQADSVVAAPSLVTYFVRDNGLGIPAAYMDKMFI 482 + NLVGNAVNYLDP R G I IG P V SL ++VRDNGLGIPA + ++F Sbjct: 420 IFANLVGNAVNYLDPEREGRIEIGTTPAPPGV---HSLRIFYVRDNGLGIPAIALPRLFT 476 Query: 483 AFQRLHGNAAKGEGIGLALVKRVVERHGGRIWVESVEGQGSCFYVALP 530 AFQRLHG+AA GEGIGLALV+R+VERHGGR+W ES EG G+ FY++LP Sbjct: 477 AFQRLHGHAAAGEGIGLALVRRMVERHGGRVWAESKEGVGTTFYLSLP 524 >ref|ZP_06841559.1| histidine kinase [Burkholderia sp. Ch1-1] gb|EFG70724.1| histidine kinase [Burkholderia sp. Ch1-1] Length = 589 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 262/528 (49%), Positives = 345/528 (65%), Gaps = 4/528 (0%) Query: 3 MRLLTKGLLIVAIPSLFEVLLLGALFKFQADAEDAEGWASHSLQVMNKAAELREPMLLEA 62 MRL TKGLL++AIP++FE+ LL L K Q+DA AE WA HS V+ + + +P+L E+ Sbjct: 1 MRLTTKGLLLIAIPAVFELALLSGLVKAQSDAAQAERWAIHSQDVLRQTTAILDPVLGES 60 Query: 63 ARVRNAVLLDLPDTLSRGDLWADIEVKTGELARLVADNASQSAAVRTVHESIASYRSWDD 122 +R AVL + + +W D++ + +LA LVADN +Q V V +++ +YR W D Sbjct: 61 VALRGAVLANDAHFATPVTVWMDVDRRIDQLADLVADNPAQVERVVQVRQAVQAYRQWSD 120 Query: 123 SARERLMRGQRDDLIRQLRDEQGPHRLSTFLNLLDNFVAEERRLGAERSERLQAARRSQT 182 ++ L G+R D++ + RD L F L F AEERRL RS AAR Q Sbjct: 121 RVQDMLHSGRRRDVLARFRDLAPTDVLDRFRQQLAAFQAEERRLDTLRSNAADAARERQQ 180 Query: 183 WLLILAVLGSIVTAALASLAFTRSISRRIAVFITNAQRLADGQTLAARVGGNDEICQLDD 242 L++ AVLGS++ ALA FTR + R+A+ NA RLA + LA G DEI +LD Sbjct: 181 TLVVAAVLGSLLFVALAVWLFTRGVRGRLALLADNAGRLAGNEPLAPIGPGRDEIARLDL 240 Query: 243 ALHRSSERLAEAARQALGYREELEQRARELADVNHDLRQQTQDNEMFIYSVSHDLRSPLV 302 LH +S RL EA R ++ +L +R ELA +N LRQQTQ+NEMFIYSVSHDLR+PLV Sbjct: 241 TLHETSRRLLEAERIQARFQADLARRTGELARINETLRQQTQENEMFIYSVSHDLRAPLV 300 Query: 303 NLQGFSKEITHATRDLLDEVDRLALPEPDRQRLRTLVEEDIHTSLRFIQNAVTRSAGIID 362 NLQGFSKE+ A +L V +L RQR+ +V+EDI +L ++Q AV R++ IID Sbjct: 301 NLQGFSKELIRACDELRVAVRESSLAAGTRQRIERVVDEDIGEALHYLQTAVLRASHIID 360 Query: 363 AMLRLSRAGRVEYQPVMLDMHAIVTRIVAAMSGSIRAKSARVEIEADLPPAYGDPTSVEQ 422 A+LRLSR GRVEY+ +++ IV R++ AM GSIRA+ A V + +LP +GDPT++EQ Sbjct: 361 ALLRLSRVGRVEYRQQKVEVRDIVPRVIDAMQGSIRARRAHVHVH-ELPAVWGDPTALEQ 419 Query: 423 VLGNLVGNAVNYLDPGRPGHITIGHVPQADSVVAAPSLVTYFVRDNGLGIPAAYMDKMFI 482 V NL+GNAVNYLDP R G I IG P V SL ++VRDNGLGIPA + ++F Sbjct: 420 VFANLIGNAVNYLDPSREGRIEIGTTPAPPGV---HSLRIFYVRDNGLGIPAVALPRLFN 476 Query: 483 AFQRLHGNAAKGEGIGLALVKRVVERHGGRIWVESVEGQGSCFYVALP 530 AFQRLHGN A GEGIGLALV+RVVERHGGR+W ES EG G+ FY++LP Sbjct: 477 AFQRLHGNVAAGEGIGLALVRRVVERHGGRVWAESKEGVGTTFYLSLP 524 >ref|YP_001895236.1| histidine kinase [Burkholderia phytofirmans PsJN] gb|ACD16012.1| histidine kinase [Burkholderia phytofirmans PsJN] Length = 582 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 262/528 (49%), Positives = 347/528 (65%), Gaps = 4/528 (0%) Query: 3 MRLLTKGLLIVAIPSLFEVLLLGALFKFQADAEDAEGWASHSLQVMNKAAELREPMLLEA 62 MRL TKGLL++AIP+LFE+ LL L K Q+DA AE WA HS V+ + + +P+L E+ Sbjct: 1 MRLTTKGLLLIAIPALFELALLSGLVKAQSDAAQAERWAVHSQDVLRQTTAILDPVLGES 60 Query: 63 ARVRNAVLLDLPDTLSRGDLWADIEVKTGELARLVADNASQSAAVRTVHESIASYRSWDD 122 +R AVL + + +W D++ + +LA LVADN +Q V V +S+ +YR W D Sbjct: 61 VALRGAVLANDARFSTPVSVWVDVDRRIDQLAELVADNPAQVERVVQVRQSVQAYRQWSD 120 Query: 123 SARERLMRGQRDDLIRQLRDEQGPHRLSTFLNLLDNFVAEERRLGAERSERLQAARRSQT 182 ++ L G+R D++ + R+ L F + F AEERRL RS AAR Q Sbjct: 121 RIQDMLHSGRRRDVLARFRELAPADVLDRFRQQVAAFQAEERRLDTLRSNAADAARERQQ 180 Query: 183 WLLILAVLGSIVTAALASLAFTRSISRRIAVFITNAQRLADGQTLAARVGGNDEICQLDD 242 L++ AVLGS++ ALA FTR + R+AV NA RLA + LA G+DEI +LD Sbjct: 181 TLVLAAVLGSLLFVALAVWLFTRGVRGRLAVLADNAGRLAGNEPLAPIGPGHDEIARLDL 240 Query: 243 ALHRSSERLAEAARQALGYREELEQRARELADVNHDLRQQTQDNEMFIYSVSHDLRSPLV 302 LH +S RL EA R +R +L +R ELA +N +LRQQTQ+NEMFIYSVSHDLR+PLV Sbjct: 241 TLHETSRRLLEAERIQARFRADLARRTGELARINENLRQQTQENEMFIYSVSHDLRAPLV 300 Query: 303 NLQGFSKEITHATRDLLDEVDRLALPEPDRQRLRTLVEEDIHTSLRFIQNAVTRSAGIID 362 NLQGFSKE+ + +L V +L RQR+ +V+EDI +L ++Q AV R++ IID Sbjct: 301 NLQGFSKELIRSCDELRAAVRESSLAAQTRQRIERVVDEDIGEALHYLQTAVLRASHIID 360 Query: 363 AMLRLSRAGRVEYQPVMLDMHAIVTRIVAAMSGSIRAKSARVEIEADLPPAYGDPTSVEQ 422 A+L LSR GRVEY+ +++ IV R++ AM GSIRA+ A V ++ +LP +GDPT++EQ Sbjct: 361 ALLHLSRVGRVEYRQQKVEVRDIVPRVIDAMQGSIRARRALVSVD-ELPAVWGDPTALEQ 419 Query: 423 VLGNLVGNAVNYLDPGRPGHITIGHVPQADSVVAAPSLVTYFVRDNGLGIPAAYMDKMFI 482 V NL+GNAVNYLDP R G I IG P V SL ++VRDNGLGIPA + ++F Sbjct: 420 VFANLIGNAVNYLDPSREGRIEIGTTPAPPGV---HSLRIFYVRDNGLGIPAVALPRLFN 476 Query: 483 AFQRLHGNAAKGEGIGLALVKRVVERHGGRIWVESVEGQGSCFYVALP 530 AFQRLHGN A GEGIGLALV+RVVERHGGR+W ES EG G+ FY++LP Sbjct: 477 AFQRLHGNVAAGEGIGLALVRRVVERHGGRVWAESKEGVGTTFYLSLP 524