BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4836.p (177 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775903.1| membrane protein [Herbaspirillum seropedicae... 154 5e-36 ref|YP_004750963.1| hypothetical protein CFU_0302 [Collimonas fu... 145 3e-33 ref|YP_001352729.1| hypothetical protein mma_1039 [Janthinobacte... 122 3e-26 ref|YP_003607538.1| hypothetical protein BC1002_4020 [Burkholder... 106 2e-21 ref|YP_003909017.1| hypothetical protein BC1003_3786 [Burkholder... 104 5e-21 >ref|YP_003775903.1| membrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63995.1| membrane protein [Herbaspirillum seropedicae SmR1] Length = 180 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 127/172 (73%), Positives = 141/172 (81%) Query: 1 MSTIIAARFDLQEDATHAVSVLEEAGFARERISSFFVNPAGQHDRFAVGGDRDKSPGAED 60 MSTIIAARF+LQEDA+ AV L AG+ RERISSFFVNPAGQHDRFA+GGDRDKSPGAED Sbjct: 1 MSTIIAARFELQEDASRAVEALVAAGYPRERISSFFVNPAGQHDRFALGGDRDKSPGAED 60 Query: 61 TDRGAAVGVAAGAGAGAVAGLATAPVTGPLGAALGGLVGGHLGGLVGSLAATDEVTPPRR 120 TDRGAA GVAAGA AGA AGLA APV GPLG ALGGLVGGH+GGLVGSL ATDE + PRR Sbjct: 61 TDRGAAAGVAAGATAGAAAGLAAAPVAGPLGPALGGLVGGHVGGLVGSLGATDEQSAPRR 120 Query: 121 LAGMLVAVAVEDEPQSLQAIRLLQGVDGSDLERAEGNIRAGDWIDFDPLSQP 172 AGMLVAV V D+ +A+ L+ + D+ERA+G IRAGDW DFDPL+ P Sbjct: 121 AAGMLVAVQVGDQQAEQKALDCLRSLHPEDIERAQGEIRAGDWDDFDPLAAP 172 >ref|YP_004750963.1| hypothetical protein CFU_0302 [Collimonas fungivorans Ter331] gb|AEK60140.1| hypothetical protein CFU_0302 [Collimonas fungivorans Ter331] Length = 186 Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 99/182 (54%), Positives = 118/182 (64%), Gaps = 13/182 (7%) Query: 1 MSTIIAARFDLQEDATHAVSVLEEAGFARERISSFFVNPAGQHDRFAVGGDRDKSPGAED 60 MS+II RF LQ+D +AVS L +AG+ RE I SF++NPAGQHD + +GGDRDKSPGAE Sbjct: 1 MSSIIFGRFQLQDDVHYAVSKLVQAGYPREAICSFYLNPAGQHDIYPIGGDRDKSPGAEK 60 Query: 61 TDRGAAVGVAAGAGAGAVAGLATAPVTGPLGAALGGLVGGHLGGLVGSLAAT-------- 112 TD G A G A GAG GA G A PV GP+ LG LVG HLGGLVGSL AT Sbjct: 61 TDTGLAAGAAVGAGMGAGVGAAVVPVIGPV---LGSLVGAHLGGLVGSLDATKDSRGKDA 117 Query: 113 --DEVTPPRRLAGMLVAVAVEDEPQSLQAIRLLQGVDGSDLERAEGNIRAGDWIDFDPLS 170 ++ R +GM VAVAV D+ Q A LL+ + +D+ER G I GDW DFDPLS Sbjct: 118 KDNDSRQEIRKSGMRVAVAVADDRQESAATALLKALGATDMERGNGTIADGDWRDFDPLS 177 Query: 171 QP 172 +P Sbjct: 178 KP 179 >ref|YP_001352729.1| hypothetical protein mma_1039 [Janthinobacterium sp. Marseille] gb|ABR88855.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 173 Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 87/174 (50%), Positives = 112/174 (64%), Gaps = 6/174 (3%) Query: 1 MSTIIAARFDLQEDATHAVSVLEEAGFARERISSFFVNPAGQHDRFAVGGDRDKSPGAED 60 M+ IIA F Q++A A++ L AG +I+SF+VNP GQHD F +GGDRD+SPG+ED Sbjct: 1 MTVIIAGHFQQQDEAKAALAALHRAGAPDGQITSFYVNPPGQHDMFPIGGDRDESPGSED 60 Query: 61 TDRGAAVGVAAGAGAGAVAGLATAPVTGPLGAALGGLVGGHLGGLVGSLAATDEVT--PP 118 +D+G A G+AAG G AG A P+ GA LVG H+G LVGSL++TDE PP Sbjct: 61 SDKGTAAGLAAGGLIGGAAGTAAGPLGAVTGA----LVGAHIGSLVGSLSSTDEEKDIPP 116 Query: 119 RRLAGMLVAVAVEDEPQSLQAIRLLQGVDGSDLERAEGNIRAGDWIDFDPLSQP 172 R AGMLVAV V E + +AI + + +ER+EG I GDW DF+PLS P Sbjct: 117 LRKAGMLVAVTVTSEEEEEKAIDTFRALGAQCVERSEGQIVNGDWTDFNPLSSP 170 >ref|YP_003607538.1| hypothetical protein BC1002_4020 [Burkholderia sp. CCGE1002] gb|ADG18027.1| conserved hypothetical protein [Burkholderia sp. CCGE1002] Length = 193 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 77/186 (41%), Positives = 104/186 (55%), Gaps = 12/186 (6%) Query: 1 MSTIIAARFDLQEDATHAVSVLEEAGFARERISSFFVNPAGQHDRFAVGGDRDKSPGAED 60 MS I+AARF A A L +AGF E ++ FFVNP GQH RF +GGD D PGA + Sbjct: 1 MSLIVAARFTTFPAAESAAQKLFDAGFVEEDVTLFFVNPRGQHARFPIGGDTDTDPGAGE 60 Query: 61 TDRGAAVGVAAGAGAGAVAGLAT-APVTGPLGAAL-GGLVGGHLGGLVGSLAATDE---- 114 +GA +GV GA GAV G+A A + PL +L VG ++G L+G+++ T E Sbjct: 61 APKGAGMGVTIGAVIGAVVGVAIFAAFSAPLLVSLIAAGVGAYVGSLIGAMSRTKERGKS 120 Query: 115 -----VTPPRRLAGMLVAVAVEDEPQSLQAIRLLQGVDGSDLERAEGNIRAGDWIDFDPL 169 R +G+LVAV V + Q L A R+L+ G +E+A G + G W DFDP Sbjct: 121 DLHVPYHEEARDSGVLVAVHVSPDNQ-LDAARVLREAGGVAIEKATGRWQQGRWADFDPT 179 Query: 170 SQPQPV 175 P+P+ Sbjct: 180 RTPKPI 185 >ref|YP_003909017.1| hypothetical protein BC1003_3786 [Burkholderia sp. CCGE1003] gb|ADN59726.1| hypothetical protein BC1003_3786 [Burkholderia sp. CCGE1003] Length = 193 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 78/187 (41%), Positives = 103/187 (55%), Gaps = 12/187 (6%) Query: 1 MSTIIAARFDLQEDATHAVSVLEEAGFARERISSFFVNPAGQHDRFAVGGDRDKSPGAED 60 MS I+AARF A A L AGF E ++ FFVNP GQH RF +GGD GA+ Sbjct: 1 MSLIVAARFTTFPAAEEAAQKLFNAGFVEEDVTLFFVNPRGQHARFPIGGDTHTDAGAKG 60 Query: 61 TDRGAAVGVAAGAGAGAVAGLAT-APVTGP-LGAALGGLVGGHLGGLVGSL------AAT 112 +GA +GV GA GA+ G+ A + P L +A+ VG ++G L G++ A Sbjct: 61 APKGAGLGVTIGAVVGAIVGVGIFAAFSAPLLVSAIAAGVGAYIGSLAGAMWRTRQGAEA 120 Query: 113 DEVTP---PRRLAGMLVAVAVEDEPQSLQAIRLLQGVDGSDLERAEGNIRAGDWIDFDPL 169 TP R +G+LVAV V + Q L+A R+L+ G +ERA G + G W DFDPL Sbjct: 121 GHRTPFHEETRDSGVLVAVHVSTDNQ-LEAARVLRDAGGVSIERATGRWQQGRWADFDPL 179 Query: 170 SQPQPVN 176 QP P+N Sbjct: 180 KQPVPLN 186