BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4829.p (491 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775911.1| glycogen synthase [Herbaspirillum seropedica... 873 0.0 ref|YP_554030.1| glycogen synthase [Burkholderia xenovorans LB40... 400 e-109 ref|YP_001889043.1| glycogen synthase [Burkholderia phytofirmans... 400 e-109 ref|YP_001861460.1| glycogen/starch synthase, ADP-glucose type [... 400 e-109 ref|YP_004230139.1| glycogen/starch synthase, ADP-glucose type [... 399 e-109 >ref|YP_003775911.1| glycogen synthase [Herbaspirillum seropedicae SmR1] gb|ADJ64003.1| glycogen synthase protein [Herbaspirillum seropedicae SmR1] Length = 529 Score = 873 bits (2255), Expect = 0.0, Method: Composition-based stats. Identities = 425/470 (90%), Positives = 445/470 (94%), Gaps = 4/470 (0%) Query: 1 MPAYPEAVRNLGDTVQIGLKHGLPGGAGRILRGTIPGTDVPALLLDTARFRQRGANPYVD 60 +PAYPEAVRNLG T QIGLKHGLPGGAGR+LRG IPGTDVPALLLDTARFRQRGANPY+D Sbjct: 43 LPAYPEAVRNLGHTEQIGLKHGLPGGAGRLLRGIIPGTDVPALLLDTARFRQRGANPYLD 102 Query: 61 TDGVEFSDNALCFADLSHAAVAICAGETSLPVPHVVHANDWHAGLIPCLLKLRGLDHIGT 120 TDGVEFSDNA+CFADLSHAAVAICAGETSL PHVVHANDWHAGLIPCLLKLRGLDHIGT Sbjct: 103 TDGVEFSDNAVCFADLSHAAVAICAGETSLSAPHVVHANDWHAGLIPCLLKLRGLDHIGT 162 Query: 121 MLTIHNLAFQGNFALESAEQIGIPQHLLTGDGVEYWGKLSFLKAGIRFSDCVSTVSKNYA 180 MLTIHNLAFQGNFALESAEQIGIPQHLLTGDGVEYWGKLSFLKAGIRFSDCVSTVS+NYA Sbjct: 163 MLTIHNLAFQGNFALESAEQIGIPQHLLTGDGVEYWGKLSFLKAGIRFSDCVSTVSRNYA 222 Query: 181 EEIMTPRFGCGMDGILSFRKLDLRAIPNAIDAELWNPADDPLIARNFSIGNMKGKAACKR 240 EIMTPRFGCGMDGILSFRKLDLRAIPNAIDAELWNPADDPLIARNFS+GNMKGKAACKR Sbjct: 223 HEIMTPRFGCGMDGILSFRKLDLRAIPNAIDAELWNPADDPLIARNFSVGNMKGKAACKR 282 Query: 241 DLQKLFGLPVDPFAPVMGLGSRISHQKMADVVIEALPGIMERHPRLQVVILGCGDHDYEA 300 DLQKLFGLPVDPFAPVMG+GSR+SHQKMADVVIEALPGIMERHPR+Q+V+LGCGDHDYE Sbjct: 283 DLQKLFGLPVDPFAPVMGMGSRLSHQKMADVVIEALPGIMERHPRMQMVVLGCGDHDYEK 342 Query: 301 AFLDLAERYRGRIAVHIGYDERRAHALHAGSDMLLHPTRFEPFGLTPLYAMRYGAIPIGS 360 + L LA+RY GRIAVHIGYDERRAHALHAGSDMLLHPTRFEPFGLTPLYAMRYGAIPIGS Sbjct: 343 SLLALAQRYAGRIAVHIGYDERRAHALHAGSDMLLHPTRFEPFGLTPLYAMRYGAIPIGS 402 Query: 361 RVGGLVDTVCDADRDPQRATGVLFEGESAADMQHAVARAFALYNDTERWQSVQRNAMSID 420 RVGGLVDTVCDAD D +RATGVLF+G+ A+DM+ AV RAFALY D ERWQS+QRNAMSID Sbjct: 403 RVGGLVDTVCDADLDAERATGVLFDGDRASDMEAAVDRAFALYADNERWQSMQRNAMSID 462 Query: 421 CDWAGPTRAYIDAYAHVADMAVRPLFAPRPLSVERPAIQAHAHPERMVSP 470 CDWAGPTRAYIDAYAHVADMAVRPLFAPRP VERPA+Q ERMV P Sbjct: 463 CDWAGPTRAYIDAYAHVADMAVRPLFAPRPQPVERPAVQH----ERMVRP 508 >ref|YP_554030.1| glycogen synthase [Burkholderia xenovorans LB400] gb|ABE34680.1| Starch (glycogen) synthase [Burkholderia xenovorans LB400] Length = 529 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 220/448 (49%), Positives = 283/448 (63%), Gaps = 11/448 (2%) Query: 1 MPAYPEAVRNLGDTVQIGLKHGLPGGAGRILRGTIPGTDVPALLLDTARFRQRGANPYVD 60 MPAYP A+ D + GLPGG R+LRG +P T VP LLL R Y D Sbjct: 43 MPAYPAALERAVDVTPVARMTGLPGGDARLLRGHMPDTGVPVLLLQMDHLFAR-EGLYRD 101 Query: 61 TDGVEFSDNALCFADLSHAAVAICAGETSLPVPHVVHANDWHAGLIPCLLKLRGLDHIGT 120 G ++ DN FA L+ AA + G ++ P +VHA+DWHAGL P L+L G+ + Sbjct: 102 PQGRDYLDNLTRFASLAAAAARVARGVRNVKRPDIVHAHDWHAGLTPLYLRLAGV-AARS 160 Query: 121 MLTIHNLAFQGNFALESAEQIGIPQHLLT-----GDGVEYWGKLSFLKAGIRFSDCVSTV 175 + TIHNLAFQGN L IG+P LL +E++G LS +KAGI +D V+TV Sbjct: 161 VFTIHNLAFQGNHPLAMGGWIGVPPELLAPALSDERSIEFYGSLSMMKAGIVHADRVTTV 220 Query: 176 SKNYAEEIMTPRFGCGMDGILSFRKLDLRAIPNAIDAELWNPADDPLIARNFSIGNMKGK 235 S+ YA EI+TPRFG GM+G+L + L I N ID+ +WNPA D IAR +S+ + GK Sbjct: 221 SRRYAREILTPRFGHGMEGVLQAQAAKLSGIVNGIDSAVWNPATDKHIARPYSVDDTAGK 280 Query: 236 AACKRDLQKLFGLPVDPFAPVMGLGSRISHQKMADVVIEALPGIMERHPRLQVVILGCGD 295 ACKRDLQ+ FGL DPFAP++ +GSR++ QK+ADVV+ LP ++ERHPRLQ ILG G+ Sbjct: 281 QACKRDLQQAFGLTRDPFAPLVAIGSRLTEQKLADVVVHTLPALLERHPRLQFAILGQGE 340 Query: 296 HDYEAAFLDLAERYRGRIAVHIGYDERRAHALHAGSDMLLHPTRFEPFGLTPLYAMRYGA 355 E A +A + GR+ V IGYDERRAH LHAG+D+LLH +RFEP GLT LYAMRYG Sbjct: 341 QGIEQALQGIAAAWPGRVGVQIGYDERRAHMLHAGADILLHGSRFEPCGLTQLYAMRYGT 400 Query: 356 IPIGSRVGGLVDTVCD----ADRDPQRATGVLFEGESAADMQHAVARAFALYNDTERWQS 411 IP+ SRVGGL DT+ D R ++ATG LF+GE+ D+ HA+ RA + + W Sbjct: 401 IPVASRVGGLADTIVDYLPHDPRGDRKATGFLFDGETPDDVMHALGRALDAFVEPSSWHV 460 Query: 412 VQRNAMSIDCDWAGPTRAYIDAYAHVAD 439 +QRNAMS D WA T Y+ YA + D Sbjct: 461 LQRNAMSRDFGWATSTSNYLSLYAELVD 488 >ref|YP_001889043.1| glycogen synthase [Burkholderia phytofirmans PsJN] gb|ACD19673.1| glycogen/starch synthase, ADP-glucose type [Burkholderia phytofirmans PsJN] Length = 533 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 233/477 (48%), Positives = 294/477 (61%), Gaps = 15/477 (3%) Query: 1 MPAYPEAVRNLGDTVQIGLKHGLPGGAGRILRGTIPGTDVPALLLDTARFRQRGANPYVD 60 MPAYP A+ D + GLPGG R+LRG +P T VP LLL R Y D Sbjct: 47 MPAYPAALERAVDVEPVARMTGLPGGDARLLRGQMPDTGVPVLLLQMDHLFAR-EGLYRD 105 Query: 61 TDGVEFSDNALCFADLSHAAVAICAGETSLPVPHVVHANDWHAGLIPCLLKLRGLDHIGT 120 G ++ DN FA L+ AA + G ++ P +VHA+DWHAGL P L+L G+ + Sbjct: 106 PQGRDYLDNLTRFASLAAAAARVARGVRNVKRPDIVHAHDWHAGLTPLYLRLAGV-AAKS 164 Query: 121 MLTIHNLAFQGNFALESAEQIGIPQHLLT-----GDGVEYWGKLSFLKAGIRFSDCVSTV 175 + TIHNLAFQGN L IG+P LL +E++G LS +KAGI SD V+TV Sbjct: 165 VFTIHNLAFQGNHPLAMGGWIGVPPELLAPALSDERSIEFYGSLSMMKAGIVHSDRVTTV 224 Query: 176 SKNYAEEIMTPRFGCGMDGILSFRKLDLRAIPNAIDAELWNPADDPLIARNFSIGNMKGK 235 S+ YA EI+TP FG GM+G+L + L I N ID +WNPA D IAR +S+ + GK Sbjct: 225 SRRYAREILTPHFGHGMEGVLQAQAAKLSGIVNGIDTSVWNPATDKHIARPYSVDDTAGK 284 Query: 236 AACKRDLQKLFGLPVDPFAPVMGLGSRISHQKMADVVIEALPGIMERHPRLQVVILGCGD 295 ACKR+LQ+ FGL DPFAP++ +GSR++ QK+ADVV+ LP ++ERHPRLQ ILG G+ Sbjct: 285 QACKRELQQAFGLTRDPFAPLVAIGSRLTEQKLADVVVHTLPALLERHPRLQFAILGQGE 344 Query: 296 HDYEAAFLDLAERYRGRIAVHIGYDERRAHALHAGSDMLLHPTRFEPFGLTPLYAMRYGA 355 E A D+A + GR+ V IGYDERRAH LHAG+D+LLH +RFEP GLT LYAMRYG Sbjct: 345 PGLEQALQDVAAAWPGRVGVQIGYDERRAHMLHAGADILLHGSRFEPCGLTQLYAMRYGT 404 Query: 356 IPIGSRVGGLVDTVCD-ADRDP---QRATGVLFEGESAADMQHAVARAFALYNDTERWQS 411 IP+ SRVGGL DT+ D DP Q+ATG LF+GES D+ HA+ RA A + W Sbjct: 405 IPVASRVGGLADTIVDYVPHDPRGEQKATGFLFDGESPDDVMHALGRALAAFVQPSSWHV 464 Query: 412 VQRNAMSIDCDWAGPTRAYIDAYAHVADM--AVR-PLFAPRPLSVERPAIQAHAHPE 465 +QRNAMS D W T Y+ YA + D A+R P PL R AI A + E Sbjct: 465 LQRNAMSRDFGWDASTANYLALYADLVDARPALRDPRVRKTPLRA-RTAIAASSKRE 520 >ref|YP_001861460.1| glycogen/starch synthase, ADP-glucose type [Burkholderia phymatum STM815] gb|ACC74414.1| glycogen/starch synthase, ADP-glucose type [Burkholderia phymatum STM815] Length = 544 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 235/505 (46%), Positives = 308/505 (60%), Gaps = 22/505 (4%) Query: 1 MPAYPEAVRNLGDTVQIGLKHGLPGGAGRILRGTIPGTDVPALLLDTARFRQRGANPYVD 60 +PAYP A+ I GLPGG R+LR +P T VP LLL +R N Y D Sbjct: 43 LPAYPTALERAVGITPICRIGGLPGGDARLLRAHMPETGVPVLLLQMDHLFKRD-NLYQD 101 Query: 61 TDGVEFSDNALCFADLSHAAVAICAGETSLPVPHVVHANDWHAGLIPCLLKLRGLDHIGT 120 G ++ DNA+ FA LS AA I G + P +VHA+DWH GL P L+KL G+ + Sbjct: 102 EQGRDYPDNAIRFASLSAAAARIARGVRGVRKPDIVHAHDWHTGLTPLLMKLSGV-AAKS 160 Query: 121 MLTIHNLAFQGNFALESAEQIGIPQHLLTG-----DGVEYWGKLSFLKAGIRFSDCVSTV 175 + T+HNLAFQGN+ L +G+P LL +E++G LS +KAGI + V TV Sbjct: 161 VFTVHNLAFQGNYPLALGSWMGVPPELLAPALTDPHSIEFYGALSMMKAGIVHAHRVVTV 220 Query: 176 SKNYAEEIMTPRFGCGMDGILSFRKLDLRAIPNAIDAELWNPADDPLIARNFSIGNMKGK 235 S+NYA EI+TP FG M+G+L L I N ID ++WNPA DPLIAR + +++GK Sbjct: 221 SENYAREILTPHFGHLMEGVLQACSHKLSGITNGIDVDMWNPAADPLIARPYCADDVRGK 280 Query: 236 AACKRDLQKLFGLPVDPFAPVMGLGSRISHQKMADVVIEALPGIMERHPRLQVVILGCGD 295 ACKR+LQ+ FG+ VDPFAP++ +GSR++ QK+ADVV EALP ++ RHPRLQV ILG G+ Sbjct: 281 QACKRELQQTFGVNVDPFAPLVAIGSRLTSQKLADVVAEALPAMLARHPRLQVAILGKGE 340 Query: 296 HDYEAAFLDLAERYRGRIAVHIGYDERRAHALHAGSDMLLHPTRFEPFGLTPLYAMRYGA 355 EAA DLA + R+ VHIGYDE+RAH LHAG+D+LLH +RFEP GLT LYA+RYG Sbjct: 341 AWLEAAMRDLAAAWPQRVGVHIGYDEQRAHMLHAGADLLLHASRFEPCGLTQLYALRYGT 400 Query: 356 IPIGSRVGGLVDTVCD--ADRDPQR------ATGVLFEGESAADMQHAVARAFALYNDTE 407 IP+ SRVGGL DT+ D +R P+ ATG LF+GE+A D+ A+ RA + Sbjct: 401 IPVASRVGGLRDTIVDYTPERSPELGLPEDGATGFLFDGETADDIAAALQRALDAFMRPS 460 Query: 408 RWQSVQRNAMSIDCDWAGPTRAYIDAYAHVADMAVRPLFAPRPLSVERPA---IQAHAHP 464 W ++QRNAM D W P ++Y++ Y + D RP PR + VER A Q + Sbjct: 461 SWHALQRNAMQGDFSWRKPVQSYLELYRTLTD--ARPA-QPR-VDVERIAASSAQRRVNR 516 Query: 465 ERMVSPAAAIAAALAGVVGVPAAVA 489 V AA AA + +VA Sbjct: 517 RTAVGNAANAQAAWGNALAAQESVA 541 >ref|YP_004230139.1| glycogen/starch synthase, ADP-glucose type [Burkholderia sp. CCGE1001] gb|ADX57079.1| glycogen/starch synthase, ADP-glucose type [Burkholderia sp. CCGE1001] Length = 532 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 220/448 (49%), Positives = 279/448 (62%), Gaps = 11/448 (2%) Query: 1 MPAYPEAVRNLGDTVQIGLKHGLPGGAGRILRGTIPGTDVPALLLDTARFRQRGANPYVD 60 MPAYP A+ D + GLPGG R+LR +P + V LLL R Y D Sbjct: 43 MPAYPAALARAVDVTPVARMTGLPGGDARLLRARMPDSGVTVLLLQMDHLFAR-EGLYRD 101 Query: 61 TDGVEFSDNALCFADLSHAAVAICAGETSLPVPHVVHANDWHAGLIPCLLKLRGLDHIGT 120 G ++ DN FA L+ AA + G +L P +VHA+DWHAGL P ++L G+ + Sbjct: 102 PQGRDYLDNLTRFASLAAAATRVARGVRNLKRPDIVHAHDWHAGLTPLYMRLAGV-AAKS 160 Query: 121 MLTIHNLAFQGNFALESAEQIGIPQHLLT-----GDGVEYWGKLSFLKAGIRFSDCVSTV 175 + TIHNLAFQGN L IG+P LL +EY+G LS +KAGI +D V+TV Sbjct: 161 VFTIHNLAFQGNHPLAMGGWIGVPPELLVPALSDERSIEYYGSLSMMKAGIVHADRVTTV 220 Query: 176 SKNYAEEIMTPRFGCGMDGILSFRKLDLRAIPNAIDAELWNPADDPLIARNFSIGNMKGK 235 S+ YA EI+TPRFG GM+G+L + L I N ID +WNPA D IAR +S+ + GK Sbjct: 221 SQRYAREILTPRFGHGMEGVLQAQAAKLSGIVNGIDTSMWNPAADAYIARPYSLDDTAGK 280 Query: 236 AACKRDLQKLFGLPVDPFAPVMGLGSRISHQKMADVVIEALPGIMERHPRLQVVILGCGD 295 ACKRDLQ+ FGL DPFAP++ +GSR++ QK+ADVV ALP ++E+HPRLQ ILG G+ Sbjct: 281 QACKRDLQQAFGLTRDPFAPLVAIGSRLTQQKLADVVARALPVLLEQHPRLQFAILGEGE 340 Query: 296 HDYEAAFLDLAERYRGRIAVHIGYDERRAHALHAGSDMLLHPTRFEPFGLTPLYAMRYGA 355 E A +LA + GR+ V IGYDERRAH LHAG+D+LLH +RFEP GLT LYAMRYG Sbjct: 341 RALEEALQELAAAWPGRVGVQIGYDERRAHMLHAGADILLHGSRFEPCGLTQLYAMRYGT 400 Query: 356 IPIGSRVGGLVDTVCDADRDPQR----ATGVLFEGESAADMQHAVARAFALYNDTERWQS 411 +P+ SRVGGL DT+ D D R ATG LF+GE D+ HAV RA A + W + Sbjct: 401 VPVASRVGGLADTIVDYAPDQAREEDCATGFLFDGEDVHDVVHAVGRALAAFVRPSSWHA 460 Query: 412 VQRNAMSIDCDWAGPTRAYIDAYAHVAD 439 +QRNAMS D W T Y+ YA + D Sbjct: 461 LQRNAMSRDSSWEVSTSNYLALYADLVD 488