BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4825.p (525 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775914.1| sigma-54 dependent transcription regulator [... 780 0.0 ref|YP_001751228.1| anaerobic nitric oxide reductase transcripti... 649 0.0 ref|YP_001860194.1| NifA subfamily transcriptional regulator [Bu... 643 0.0 ref|YP_262120.1| anaerobic nitric oxide reductase transcription ... 642 0.0 ref|YP_001889862.1| anaerobic nitric oxide reductase transcripti... 630 e-178 >ref|YP_003775914.1| sigma-54 dependent transcription regulator [Herbaspirillum seropedicae SmR1] gb|ADJ64006.1| sigma-54 dependent transcription regulator (nitric oxide sensor) protein [Herbaspirillum seropedicae SmR1] Length = 526 Score = 780 bits (2013), Expect = 0.0, Method: Composition-based stats. Identities = 452/526 (85%), Positives = 485/526 (92%), Gaps = 1/526 (0%) Query: 1 MTSKVLLDALLPLVADLSRQIDDRERYRRLLQTLRTLFPCDAAALLRLEGELLVPLAIDG 60 MTS+ LLDAL+PLVADLSR+IDDRERYRRLLQTLRTLFPCDAAALLRLEG++LVPLAIDG Sbjct: 1 MTSRTLLDALVPLVADLSREIDDRERYRRLLQTLRTLFPCDAAALLRLEGDVLVPLAIDG 60 Query: 61 LSSDTLGRRFRIADHPRFGVLLANLGPTRFPADSSLPDPYDGLVDGLNDAHSGALEVHDC 120 LSSDTLGRRFRI +HPRFG+LL N PTRF ADS LPDPYDGLVDGLND HSG LEVHDC Sbjct: 61 LSSDTLGRRFRITEHPRFGILLGNAAPTRFAADSPLPDPYDGLVDGLNDQHSGELEVHDC 120 Query: 121 MGCALSVNGRPWGLVTLDALGAGRFDGVDMASLQAFAALAAATVHVAERIDDLAAAGERA 180 MGCAL+VNGR WGL+TLDALG GRFD VDM SLQAFAALAAATV+VAERI DLA AG++A Sbjct: 121 MGCALTVNGRAWGLMTLDALGRGRFDRVDMDSLQAFAALAAATVNVAERISDLAQAGQQA 180 Query: 181 RQRAEAYRLGLEESQGKRELIGQSPAQQQLLEEIRMAAPSDMTVLVTGETGTGKELVAHA 240 +QRAEAYRLGLE+SQG+RELIGQSPA +QL++EI MAAPSDMTVLV GETGTGKELVAHA Sbjct: 181 QQRAEAYRLGLEQSQGQRELIGQSPAHRQLMQEIGMAAPSDMTVLVAGETGTGKELVAHA 240 Query: 241 LHAASPRAHKPMISLNCAALPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFLDE 300 LHAASPRAHKPMISLNCAALPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFLDE Sbjct: 241 LHAASPRAHKPMISLNCAALPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFLDE 300 Query: 301 VGELPLAVQAKLLRVLQSGQLQRVGSDREHRVDVRLIAATNRDLAEEVKRGHFRADFYHR 360 VGELPLAVQAKLLRVLQSGQLQRVGSDREHRVDVRLIAATNRDLA+EVKRGHFRADFYHR Sbjct: 301 VGELPLAVQAKLLRVLQSGQLQRVGSDREHRVDVRLIAATNRDLADEVKRGHFRADFYHR 360 Query: 361 LSVFPIRVPPLRERGRDVLLLAGYFLEQNRARLGLSSLRLAADAQRALLDYAWPGNIREL 420 LSVFPIRVPPLRERGRDVLLLAGYFLEQNRARLGLSSLRL+ADAQRALLDYAWPGNIREL Sbjct: 361 LSVFPIRVPPLRERGRDVLLLAGYFLEQNRARLGLSSLRLSADAQRALLDYAWPGNIREL 420 Query: 421 EHLIGRSALRALASQPKRSAILTLDAAALEL-GHSARPLASPDTAANAQAEPAQPGEGLR 479 EHLIGRSALR+LA+ R ILTLDAAALEL S +A+ + + A++ PAQ LR Sbjct: 421 EHLIGRSALRSLATHRTRPTILTLDAAALELPAPSLATVAAAEPSLPAESTPAQASGSLR 480 Query: 480 AAVERFERKLVSDCLERHGGNLAATARELGVDRANLNRLARRLGLR 525 A+ER+ER+LVS L+RHGGNLAATARELGVDRANLNRLA+RLGLR Sbjct: 481 DALERYERQLVSAALQRHGGNLAATARELGVDRANLNRLAKRLGLR 526 >ref|YP_001751228.1| anaerobic nitric oxide reductase transcriptional regulator [Pseudomonas putida W619] gb|ACA74859.1| transcriptional regulator, NifA subfamily, Fis Family [Pseudomonas putida W619] Length = 516 Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 365/525 (69%), Positives = 428/525 (81%), Gaps = 9/525 (1%) Query: 1 MTSKVLLDALLPLVADLSRQIDDRERYRRLLQTLRTLFPCDAAALLRLEGELLVPLAIDG 60 MT+K LL ALLPLV+DLSR + + ERYRRLLQ +R L PCDAAALLRL+GE LVPLA+DG Sbjct: 1 MTAKPLLTALLPLVSDLSRDLPEEERYRRLLQAMRGLLPCDAAALLRLDGEWLVPLAVDG 60 Query: 61 LSSDTLGRRFRIADHPRFGVLLANLGPTRFPADSSLPDPYDGLVDGLNDAHSGALEVHDC 120 LS+DTLGRRF++++HPRF VLL+ PTRFP+DS LPDPYDGLV+ AH L VHDC Sbjct: 61 LSADTLGRRFKVSEHPRFQVLLSRAEPTRFPSDSQLPDPYDGLVN----AHDVDLHVHDC 116 Query: 121 MGCALSVNGRPWGLVTLDALGAGRFDGVDMASLQAFAALAAATVHVAERIDDLAAAGERA 180 MGC L V+ RPWGLVTLDAL G+F +++ +LQAFA+LAAATV VAERI+ LA E Sbjct: 117 MGCPLMVDERPWGLVTLDALTPGQFQSLELDALQAFASLAAATVTVAERIEHLALRAEDE 176 Query: 181 RQRAEAYRLGLEESQGKRELIGQSPAQQQLLEEIRMAAPSDMTVLVTGETGTGKELVAHA 240 QRAE YR + S +ELIGQSPA ++LL+EIR+ SD+TVL+TGETG GKELVA A Sbjct: 177 HQRAEIYR---QASGQDKELIGQSPAHKRLLDEIRLVGGSDLTVLITGETGVGKELVAQA 233 Query: 241 LHAASPRAHKPMISLNCAALPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFLDE 300 LH AS RA+KP+ISLNCAALPDTLVESELFGHVRGAF+GA +RRGKFE+A+GGTLFLDE Sbjct: 234 LHQASHRANKPLISLNCAALPDTLVESELFGHVRGAFTGAHGERRGKFELANGGTLFLDE 293 Query: 301 VGELPLAVQAKLLRVLQSGQLQRVGSDREHRVDVRLIAATNRDLAEEVKRGHFRADFYHR 360 VGELPLAVQAKLLRVLQSGQLQR+GSDREH VDVRLIAATNRDLA EV+ G++RADFYHR Sbjct: 294 VGELPLAVQAKLLRVLQSGQLQRLGSDREHTVDVRLIAATNRDLAAEVRNGNYRADFYHR 353 Query: 361 LSVFPIRVPPLRERGRDVLLLAGYFLEQNRARLGLSSLRLAADAQRALLDYAWPGNIREL 420 LSV+P++VPPLRERGRDVLLLAGYFLEQNR+RLGL+SLRL+ +AQ ALL Y WPGN+REL Sbjct: 354 LSVYPLQVPPLRERGRDVLLLAGYFLEQNRSRLGLNSLRLSNEAQSALLAYDWPGNVREL 413 Query: 421 EHLIGRSALRALASQPKRSAILTLDAAALELGHSARPLASPDTAANAQAEPAQPGEGLRA 480 EHLIGRSAL+AL P R ILTL A+ L+L A + +P A A+ GLR Sbjct: 414 EHLIGRSALKALGQHPDRPRILTLQASDLDLRTVAGGVQAPSPAPLPAPSLAE--GGLRE 471 Query: 481 AVERFERKLVSDCLERHGGNLAATARELGVDRANLNRLARRLGLR 525 AV+ ++R+++ CL+RH N AA ARELG+DRANLNRLARRLGLR Sbjct: 472 AVDGYQRQIIDACLQRHQDNWAAAARELGLDRANLNRLARRLGLR 516 >ref|YP_001860194.1| NifA subfamily transcriptional regulator [Burkholderia phymatum STM815] gb|ACC73148.1| transcriptional regulator, NifA subfamily, Fis Family [Burkholderia phymatum STM815] Length = 532 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 366/526 (69%), Positives = 423/526 (80%), Gaps = 7/526 (1%) Query: 1 MTSKVLLDALLPLVADLSRQIDDRERYRRLLQTLRTLFPCDAAALLRLEGELLVPLAIDG 60 +T+ +LDAL+PLV DLSR + +RERYRRLL TLRTLFP DAAALLRL+ ++LVPLAIDG Sbjct: 13 LTASKVLDALIPLVEDLSRDLPERERYRRLLTTLRTLFPGDAAALLRLDDDILVPLAIDG 72 Query: 61 LSSDTLGRRFRIADHPRFGVLLANLGPTRFPADSSLPDPYDGLVDGLNDAHSGALEVHDC 120 L+ DTLGRRFR++DHPRF LL++ PTRFPA S LPDPYDGLV G+ SG LEVHDC Sbjct: 73 LTGDTLGRRFRVSDHPRFEALLSSEHPTRFPAHSELPDPYDGLVQGV----SGHLEVHDC 128 Query: 121 MGCALSVNGRPWGLVTLDALGAGRFDGVDMASLQAFAALAAATVHVAERIDDLAAAGERA 180 +GC L + GRPWGL+TLD+L RFD +DM +LQAF +LAAATV VAERID L E Sbjct: 129 LGCPLLIGGRPWGLLTLDSLDPERFDSIDMNTLQAFLSLAAATVSVAERIDTLERNTEEE 188 Query: 181 RQRAEAYRLGLEESQGKRELIGQSPAQQQLLEEIRMAAPSDMTVLVTGETGTGKELVAHA 240 RQRAEAYR Q REL+G S A QQL+ EIR+ A SD+TVL+TGETG GKELVA+A Sbjct: 189 RQRAEAYRQA--SGQSSRELVGSSTAHQQLMNEIRVVANSDLTVLITGETGVGKELVANA 246 Query: 241 LHAASPRAHKPMISLNCAALPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFLDE 300 +H SPRA+KPMISLNCAALPDTLVESELFGHVRGAFSGA +DRRGKFE+ADGGTLFLDE Sbjct: 247 IHTGSPRANKPMISLNCAALPDTLVESELFGHVRGAFSGASSDRRGKFELADGGTLFLDE 306 Query: 301 VGELPLAVQAKLLRVLQSGQLQRVGSDREHRVDVRLIAATNRDLAEEVKRGHFRADFYHR 360 VGELPL VQAKLLRVLQ+GQLQR+GSD EH+VDVRLIAATNRDLAEEV+ G FRAD YHR Sbjct: 307 VGELPLGVQAKLLRVLQNGQLQRIGSDSEHKVDVRLIAATNRDLAEEVRDGRFRADLYHR 366 Query: 361 LSVFPIRVPPLRERGRDVLLLAGYFLEQNRARLGLSSLRLAADAQRALLDYAWPGNIREL 420 LSV+P+RVPPLRERGRDVLLLAG+FLE+NRARLGL S+RL DAQ ALL Y+WPGN+REL Sbjct: 367 LSVYPLRVPPLRERGRDVLLLAGFFLEENRARLGLLSIRLGQDAQTALLSYSWPGNVREL 426 Query: 421 EHLIGRSALRALASQPKRSAILTLDAAALELGHS-ARPLASPDTAANAQAEPAQPGEGLR 479 EH+IGRSA +AL+ P+R ILTL AA L + S +A+ + A A A R Sbjct: 427 EHMIGRSAFKALSRHPERPRILTLTAADLGMSASNGGEVAATASNAGAADAGAANAADFR 486 Query: 480 AAVERFERKLVSDCLERHGGNLAATARELGVDRANLNRLARRLGLR 525 +AV +ER LVSD LER+ N AA AR LG+DRANLNRLA+RLGL+ Sbjct: 487 SAVTAYERTLVSDALERNNHNWAAVARSLGMDRANLNRLAKRLGLK 532 >ref|YP_262120.1| anaerobic nitric oxide reductase transcription regulator [Pseudomonas fluorescens Pf-5] gb|AAY94269.1| sigma-54 dependent transcriptional regulator [Pseudomonas fluorescens Pf-5] Length = 518 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 359/526 (68%), Positives = 435/526 (82%), Gaps = 9/526 (1%) Query: 1 MTSKVLLDALLPLVADLSRQIDDRERYRRLLQTLRTLFPCDAAALLRLEGELLVPLAIDG 60 MT+K LL ALLPLV DLSR++ + ERYRRLL+ LR L PCDA ALLRL+GE LVPLA++G Sbjct: 1 MTAKSLLTALLPLVTDLSRELPEGERYRRLLEALRALLPCDATALLRLDGEWLVPLAVNG 60 Query: 61 LSSDTLGRRFRIADHPRFGVLLANLGPTRFPADSSLPDPYDGLVDGLNDAHSGALEVHDC 120 LS+DTLGRRF++++HPRF LL++ GPTRF +DS LPDPYDGLV+GL+D LEVHDC Sbjct: 61 LSTDTLGRRFKVSEHPRFAALLSSPGPTRFASDSDLPDPYDGLVEGLDDH----LEVHDC 116 Query: 121 MGCALSVNGRPWGLVTLDALGAGRFDGVDMASLQAFAALAAATVHVAERIDDLAAAGERA 180 MGC L V+ RPWGL+TLDAL RF+ +++ +LQAFA+LAAATV A+RI+ LA E Sbjct: 117 MGCPLFVDERPWGLLTLDALDPQRFEPIELDALQAFASLAAATVSAAQRIERLAQRAENE 176 Query: 181 RQRAEAYRLGLEESQGKRELIGQSPAQQQLLEEIRMAAPSDMTVLVTGETGTGKELVAHA 240 QRAE YR + S RE+IGQS A ++LLEEI++ SD+TVL+TGETG GKELVA A Sbjct: 177 HQRAEVYR---QASGQNREMIGQSKAHKRLLEEIKLVGGSDLTVLITGETGVGKELVAQA 233 Query: 241 LHAASPRAHKPMISLNCAALPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFLDE 300 +HAASPRA +P+ISLNCAALPDTLVESELFGHVRGAF+GA DRRGKFE+A+GGTLFLDE Sbjct: 234 IHAASPRAEQPIISLNCAALPDTLVESELFGHVRGAFTGATQDRRGKFELANGGTLFLDE 293 Query: 301 VGELPLAVQAKLLRVLQSGQLQRVGSDREHRVDVRLIAATNRDLAEEVKRGHFRADFYHR 360 VGEL L VQAKLLRVLQSGQLQR+GSD+EHRVDVRLIAATNRDLAEEV+ G +RADFYHR Sbjct: 294 VGELSLTVQAKLLRVLQSGQLQRLGSDQEHRVDVRLIAATNRDLAEEVRNGRYRADFYHR 353 Query: 361 LSVFPIRVPPLRERGRDVLLLAGYFLEQNRARLGLSSLRLAADAQRALLDYAWPGNIREL 420 LSV+P+RVP LRERGRDVLLL+GYFLEQNR+R+GL SLRL+ +AQ+ALL Y WPGN+REL Sbjct: 354 LSVYPLRVPALRERGRDVLLLSGYFLEQNRSRMGLGSLRLSVEAQQALLAYHWPGNVREL 413 Query: 421 EHLIGRSALRALASQPKRSAILTLDAAALELGHSARPLASP-DTAANAQAEPAQPGEGLR 479 EHLIGRSAL+AL + P+R IL+LDA L+L ++ ++P + A+ QA PA G+ LR Sbjct: 414 EHLIGRSALKALGNHPERPKILSLDAGDLDLPRASERTSAPVEPASATQAMPAVAGD-LR 472 Query: 480 AAVERFERKLVSDCLERHGGNLAATARELGVDRANLNRLARRLGLR 525 A + ++R+L+S CLERH N A+ ARELG+DRANL+RLA+RLGLR Sbjct: 473 QATDHYQRQLISSCLERHQHNWASAARELGLDRANLSRLAKRLGLR 518 >ref|YP_001889862.1| anaerobic nitric oxide reductase transcription regulator [Burkholderia phytofirmans PsJN] gb|ACD20491.1| transcriptional regulator, NifA subfamily, Fis Family [Burkholderia phytofirmans PsJN] Length = 531 Score = 630 bits (1626), Expect = e-178, Method: Composition-based stats. Identities = 367/526 (69%), Positives = 420/526 (79%), Gaps = 11/526 (2%) Query: 1 MTSKVLLDALLPLVADLSRQIDDRERYRRLLQTLRTLFPCDAAALLRLEGELLVPLAIDG 60 +T++ LLDAL PL+ DLSR + + ERYRRLL +LR LFP DAAALLRLEG+ LVPLAIDG Sbjct: 16 LTAEALLDALTPLIRDLSRDLPESERYRRLLSSLRALFPGDAAALLRLEGDTLVPLAIDG 75 Query: 61 LSSDTLGRRFRIADHPRFGVLLANLGPTRFPADSSLPDPYDGLVDGLNDAHSGALEVHDC 120 LSSDTLGRRFR+ DHPRF LL+ PTRF ADS LPDPYDGLV G+ +G LEVHDC Sbjct: 76 LSSDTLGRRFRVGDHPRFEQLLSRPEPTRFAADSDLPDPYDGLVQGV----AGHLEVHDC 131 Query: 121 MGCALSVNGRPWGLVTLDALGAGRFDGVDMASLQAFAALAAATVHVAERIDDLAAAGERA 180 +GC L V GRPWGL+TLDAL RFD +DMASL+AF LAAATV V ERID LA + E Sbjct: 132 LGCPLFVRGRPWGLLTLDALDPARFDSIDMASLRAFLGLAAATVSVVERIDTLARSTEEE 191 Query: 181 RQRAEAYRLGLEESQGKRELIGQSPAQQQLLEEIRMAAPSDMTVLVTGETGTGKELVAHA 240 R RAEAYR SQ +RE++G S A L++EI + A SD+TVL+TGETG GKELVA+A Sbjct: 192 RARAEAYRQA--SSQSRREMVGSSDAHTHLMKEIEVVAGSDLTVLITGETGVGKELVANA 249 Query: 241 LHAASPRAHKPMISLNCAALPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFLDE 300 +HA S RA+KP+ISLNCAALPDTLVESELFGHVRGAFSGA +DRRGKFE+ADGGT+FLDE Sbjct: 250 IHALSSRANKPLISLNCAALPDTLVESELFGHVRGAFSGASSDRRGKFELADGGTIFLDE 309 Query: 301 VGELPLAVQAKLLRVLQSGQLQRVGSDREHRVDVRLIAATNRDLAEEVKRGHFRADFYHR 360 VGELPL VQAKLLRVLQ+GQLQR+GSD EH+VDVRLIAATNRDLAEEV+ G FRADFYHR Sbjct: 310 VGELPLLVQAKLLRVLQNGQLQRIGSDHEHKVDVRLIAATNRDLAEEVRAGRFRADFYHR 369 Query: 361 LSVFPIRVPPLRERGRDVLLLAGYFLEQNRARLGLSSLRLAADAQRALLDYAWPGNIREL 420 LSV+P+RVPPLRERGRDVLLLAG+FLE+NR+RLGL SLRLAADAQ LL Y WPGN+REL Sbjct: 370 LSVYPLRVPPLRERGRDVLLLAGFFLEENRSRLGLLSLRLAADAQAMLLRYPWPGNVREL 429 Query: 421 EHLIGRSALRALASQPKRSAILTLDAAALELGHSARPLASPDTAANAQAEPAQPG-EGLR 479 EHLIGRSAL+ALA+ +R ILTL AA + D A N QAE + + R Sbjct: 430 EHLIGRSALKALATNRERRRILTLTAADF----ALAAAPEEDRAQNTQAETTETASKDFR 485 Query: 480 AAVERFERKLVSDCLERHGGNLAATARELGVDRANLNRLARRLGLR 525 +AV FER +V D L RH N AA ARELG+DRANLNRLA+RLGL+ Sbjct: 486 SAVTEFERNMVVDALARHNQNWAAVARELGLDRANLNRLAKRLGLK 531