BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4821.p (451 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775919.1| sugar permease of the major facilitator supe... 720 0.0 ref|YP_004751528.1| general substrate transporter [Collimonas fu... 667 0.0 ref|YP_004753301.1| general substrate transporter [Collimonas fu... 660 0.0 ref|YP_004153076.1| general substrate transporter [Variovorax pa... 636 e-180 ref|YP_004234158.1| general substrate transporter [Acidovorax av... 622 e-176 >ref|YP_003775919.1| sugar permease of the major facilitator superfamily protein [Herbaspirillum seropedicae SmR1] gb|ADJ64011.1| sugar permease of the major facilitator superfamily protein [Herbaspirillum seropedicae SmR1] Length = 428 Score = 720 bits (1859), Expect = 0.0, Method: Composition-based stats. Identities = 398/428 (92%), Positives = 411/428 (96%) Query: 24 MTTSTSSQSKFSTVLRVTSGNFMEMFDFFLFGFYATHISKAFFPSDNEFASLMLTFMTFG 83 MTTST+SQSKFSTVLRVTSGNFMEMFDFFLFGFYATHISKAFFPSDNEFASLMLTFMTFG Sbjct: 1 MTTSTASQSKFSTVLRVTSGNFMEMFDFFLFGFYATHISKAFFPSDNEFASLMLTFMTFG 60 Query: 84 AGFLMRPLGAIILGAYVDRVGRRQGLIVTLALMALRTVLIAFVPSYATIGVLAPVLVLVG 143 AGFLMRPLGAIILGAYVDRVGRRQGLIVTLALMAL T+LIAFVPSYATIG LAP+LVL+G Sbjct: 61 AGFLMRPLGAIILGAYVDRVGRRQGLIVTLALMALGTMLIAFVPSYATIGALAPLLVLIG 120 Query: 144 RLLQGFSAGVELGGVSVYLAEMATPGRKRFYVSWQSASQQVAIIFAAAIGYGLNIWLTKD 203 RLLQGFSAGVELGGVSVYLAEMATPG K FYVSWQSASQQVAII AAAIGY L+ LT Sbjct: 121 RLLQGFSAGVELGGVSVYLAEMATPGNKGFYVSWQSASQQVAIIVAAAIGYLLSTSLTPA 180 Query: 204 QVGDWGWRVPFFIGCLIVPVLFVIRRSLQETEEFMRRKHRPSTGQIFRSMIENWKLVIAG 263 +V WGWR+PFFIGCLIVPVLFVIRRSLQETEEFMRRKHRPSTGQIFRSMIENWKLVIAG Sbjct: 181 EVSGWGWRIPFFIGCLIVPVLFVIRRSLQETEEFMRRKHRPSTGQIFRSMIENWKLVIAG 240 Query: 264 MMLVSMTTVSFYLITVYTPTFGKNVLKLSTEASLIVTLCVGLSNFIWLPIMGALSDRIGR 323 MMLVSMTTVSFYLITVYTPTFGKNVLKLSTEASLIVTLCVGLSNFIWLPIMGALSDR+GR Sbjct: 241 MMLVSMTTVSFYLITVYTPTFGKNVLKLSTEASLIVTLCVGLSNFIWLPIMGALSDRVGR 300 Query: 324 RPILVTFTVLTILTAYPAVNWLVHDASFAKMLMVELWLSFLYASYNGAMVVALTEVMPAE 383 RP+LVTFTVLTILTAYPAVNWLVHDASFAKML+VELWLSFLYASYNGAMVVALTEVMPA+ Sbjct: 301 RPLLVTFTVLTILTAYPAVNWLVHDASFAKMLIVELWLSFLYASYNGAMVVALTEVMPAD 360 Query: 384 VRTVGFSLAYSLATAIFGGFTPAIATGLIQATGDKAAPGIWMSTAAVCGLIATLILYRNK 443 VRT GFSLAYSLATA+FGGFTPAIATGLI+ T DKAAPGIWMSTAAVCGLIATLILYRNK Sbjct: 361 VRTAGFSLAYSLATAVFGGFTPAIATGLIEYTHDKAAPGIWMSTAAVCGLIATLILYRNK 420 Query: 444 AARQAVTA 451 A RQA TA Sbjct: 421 AVRQAATA 428 >ref|YP_004751528.1| general substrate transporter [Collimonas fungivorans Ter331] gb|AEK60705.1| General substrate transporter [Collimonas fungivorans Ter331] Length = 478 Score = 667 bits (1721), Expect = 0.0, Method: Composition-based stats. Identities = 345/426 (80%), Positives = 386/426 (90%) Query: 16 PTDNEAHIMTTSTSSQSKFSTVLRVTSGNFMEMFDFFLFGFYATHISKAFFPSDNEFASL 75 P ++ HIM T+ SSQSKF TVLRVTSGNFMEMFDFFLFGFYAT+ISK FFP+ +EFASL Sbjct: 41 PPISQRHIMATTQSSQSKFGTVLRVTSGNFMEMFDFFLFGFYATYISKTFFPAGDEFASL 100 Query: 76 MLTFMTFGAGFLMRPLGAIILGAYVDRVGRRQGLIVTLALMALRTVLIAFVPSYATIGVL 135 MLTFMTFGAGFLMRPLGAIILGAYVDRVGRR+GLI TLALMAL T+LIAFVP YA+IG Sbjct: 101 MLTFMTFGAGFLMRPLGAIILGAYVDRVGRRKGLITTLALMALGTMLIAFVPGYASIGYA 160 Query: 136 APVLVLVGRLLQGFSAGVELGGVSVYLAEMATPGRKRFYVSWQSASQQVAIIFAAAIGYG 195 AP+LVL+GRLLQGFSAGVELGGVSVYL+EMATPG K FYVSWQSASQQVAII AAA+G+G Sbjct: 161 APLLVLIGRLLQGFSAGVELGGVSVYLSEMATPGHKGFYVSWQSASQQVAIIVAAALGFG 220 Query: 196 LNIWLTKDQVGDWGWRVPFFIGCLIVPVLFVIRRSLQETEEFMRRKHRPSTGQIFRSMIE 255 L +WL Q+ DWGWR+PFF+GC+IVPVLFVIRRSLQETEEFM RKH+P+ +I RSM++ Sbjct: 221 LQVWLQPAQIADWGWRIPFFVGCMIVPVLFVIRRSLQETEEFMARKHKPAMREILRSMVD 280 Query: 256 NWKLVIAGMMLVSMTTVSFYLITVYTPTFGKNVLKLSTEASLIVTLCVGLSNFIWLPIMG 315 NW LV+AGMMLVSMTTVSFYLITVYTPTFGK+VLKL+T +L+VT CVG+SNFIWLP+MG Sbjct: 281 NWGLVVAGMMLVSMTTVSFYLITVYTPTFGKSVLKLTTIDALVVTFCVGISNFIWLPVMG 340 Query: 316 ALSDRIGRRPILVTFTVLTILTAYPAVNWLVHDASFAKMLMVELWLSFLYASYNGAMVVA 375 ALSDRIGR+P+L+ FTVLTILTAYPA++WLV D +F KMLMVELWLSFLYASYNGAMVVA Sbjct: 341 ALSDRIGRKPLLLVFTVLTILTAYPALSWLVADPTFQKMLMVELWLSFLYASYNGAMVVA 400 Query: 376 LTEVMPAEVRTVGFSLAYSLATAIFGGFTPAIATGLIQATGDKAAPGIWMSTAAVCGLIA 435 LTEVMP EVRT GFSLAYSLATAIFGGFTPAIATGLI+ TGDK APG+WM+ AA+CGL A Sbjct: 401 LTEVMPVEVRTAGFSLAYSLATAIFGGFTPAIATGLIEYTGDKGAPGMWMTAAAICGLFA 460 Query: 436 TLILYR 441 TL LYR Sbjct: 461 TLYLYR 466 >ref|YP_004753301.1| general substrate transporter [Collimonas fungivorans Ter331] gb|AEK62478.1| General substrate transporter [Collimonas fungivorans Ter331] Length = 451 Score = 660 bits (1704), Expect = 0.0, Method: Composition-based stats. Identities = 355/431 (82%), Positives = 386/431 (89%) Query: 16 PTDNEAHIMTTSTSSQSKFSTVLRVTSGNFMEMFDFFLFGFYATHISKAFFPSDNEFASL 75 P E + + ++ SKF TVLRVTSGNFMEMFDFFLFGFYAT+ISK FFPS +EFASL Sbjct: 6 PIACEIKMTAIAAATPSKFGTVLRVTSGNFMEMFDFFLFGFYATYISKTFFPSGDEFASL 65 Query: 76 MLTFMTFGAGFLMRPLGAIILGAYVDRVGRRQGLIVTLALMALRTVLIAFVPSYATIGVL 135 MLTFMTFGAGFLMRPLGAI+LGAYVDRVGRRQGLIVTLALMAL TVLIAFVP +ATIG L Sbjct: 66 MLTFMTFGAGFLMRPLGAILLGAYVDRVGRRQGLIVTLALMALGTVLIAFVPGFATIGYL 125 Query: 136 APVLVLVGRLLQGFSAGVELGGVSVYLAEMATPGRKRFYVSWQSASQQVAIIFAAAIGYG 195 AP LVL+GRLLQGFSAGVELGGVSVYLAEMATPG K FYVSWQSASQQVAII AAA+GY Sbjct: 126 APFLVLIGRLLQGFSAGVELGGVSVYLAEMATPGNKGFYVSWQSASQQVAIIVAAALGYA 185 Query: 196 LNIWLTKDQVGDWGWRVPFFIGCLIVPVLFVIRRSLQETEEFMRRKHRPSTGQIFRSMIE 255 LNIWLT Q+G WGWRVPFFIGC+IVPVLF+IRRSLQETEEFM+RK RP T IFRSM++ Sbjct: 186 LNIWLTPLQIGSWGWRVPFFIGCMIVPVLFMIRRSLQETEEFMKRKQRPDTRAIFRSMLD 245 Query: 256 NWKLVIAGMMLVSMTTVSFYLITVYTPTFGKNVLKLSTEASLIVTLCVGLSNFIWLPIMG 315 NW LVI GMMLV+MTTVSFYLIT+YTPTFGKNVLKLST SLIVTLCVG+SNFIWLPIMG Sbjct: 246 NWGLVITGMMLVAMTTVSFYLITIYTPTFGKNVLKLSTADSLIVTLCVGISNFIWLPIMG 305 Query: 316 ALSDRIGRRPILVTFTVLTILTAYPAVNWLVHDASFAKMLMVELWLSFLYASYNGAMVVA 375 ALSDRIGRRPIL+ FTVLT+L+AYPA+ WL SF KML+VELWLSFLYASYNGAMVVA Sbjct: 306 ALSDRIGRRPILIFFTVLTVLSAYPAMTWLTSAPSFEKMLVVELWLSFLYASYNGAMVVA 365 Query: 376 LTEVMPAEVRTVGFSLAYSLATAIFGGFTPAIATGLIQATGDKAAPGIWMSTAAVCGLIA 435 LTEVMP EVRT GFSLAYSLATAIFGGFTPAIAT LI+ATGDKAAPG+WM+ AAVCGLIA Sbjct: 366 LTEVMPVEVRTAGFSLAYSLATAIFGGFTPAIATALIEATGDKAAPGLWMTFAAVCGLIA 425 Query: 436 TLILYRNKAAR 446 TL+LYR ++ + Sbjct: 426 TLVLYRKRSVK 436 >ref|YP_004153076.1| general substrate transporter [Variovorax paradoxus EPS] gb|ADU34965.1| general substrate transporter [Variovorax paradoxus EPS] Length = 447 Score = 636 bits (1641), Expect = e-180, Method: Composition-based stats. Identities = 340/421 (80%), Positives = 382/421 (90%) Query: 25 TTSTSSQSKFSTVLRVTSGNFMEMFDFFLFGFYATHISKAFFPSDNEFASLMLTFMTFGA 84 +++T+S SKF+TVLRVT GNFMEMFDFFLFGFYAT ISKAFFP+ NEFASLMLTFMTFGA Sbjct: 17 SSTTASSSKFATVLRVTGGNFMEMFDFFLFGFYATQISKAFFPAGNEFASLMLTFMTFGA 76 Query: 85 GFLMRPLGAIILGAYVDRVGRRQGLIVTLALMALRTVLIAFVPSYATIGVLAPVLVLVGR 144 GFLMRPLGAI LGAYVDRVGRR+GLIVTLALMAL T+LIA VP+YATIGV+AP+LVL+GR Sbjct: 77 GFLMRPLGAIFLGAYVDRVGRRKGLIVTLALMALGTLLIACVPAYATIGVIAPLLVLIGR 136 Query: 145 LLQGFSAGVELGGVSVYLAEMATPGRKRFYVSWQSASQQVAIIFAAAIGYGLNIWLTKDQ 204 LLQGFSAGVELGGVSVYL+EMATPGRK FYVSWQSASQQVAI+ AAA+GY LN+ T + Sbjct: 137 LLQGFSAGVELGGVSVYLSEMATPGRKGFYVSWQSASQQVAIVVAAALGYWLNVTFTSQE 196 Query: 205 VGDWGWRVPFFIGCLIVPVLFVIRRSLQETEEFMRRKHRPSTGQIFRSMIENWKLVIAGM 264 +GD+ WRVPFF+GCLIVPVLF+IRRSLQETEEFM RKHRP +IF+SM+ NW LV+AGM Sbjct: 197 IGDFYWRVPFFVGCLIVPVLFIIRRSLQETEEFMARKHRPDAREIFQSMVANWGLVVAGM 256 Query: 265 MLVSMTTVSFYLITVYTPTFGKNVLKLSTEASLIVTLCVGLSNFIWLPIMGALSDRIGRR 324 MLVSMTTVSFYLITVYTPTFGK+VL LST +LIVTLCV +SNFIWLPIMGALSDR+GR+ Sbjct: 257 MLVSMTTVSFYLITVYTPTFGKSVLHLSTTDALIVTLCVAISNFIWLPIMGALSDRVGRK 316 Query: 325 PILVTFTVLTILTAYPAVNWLVHDASFAKMLMVELWLSFLYASYNGAMVVALTEVMPAEV 384 P+L+ FTVLTILTAYP++ WLV SFA+ML VELWLSFLYASYNGAMVVALTEVMP V Sbjct: 317 PLLILFTVLTILTAYPSLKWLVGAPSFARMLEVELWLSFLYASYNGAMVVALTEVMPVNV 376 Query: 385 RTVGFSLAYSLATAIFGGFTPAIATGLIQATGDKAAPGIWMSTAAVCGLIATLILYRNKA 444 RT GFSLAYSLATA+FGGFTPAIATGLI+ TGDK APG+WM+TAA+CGLIATL+LYR Sbjct: 377 RTAGFSLAYSLATALFGGFTPAIATGLIEMTGDKGAPGLWMTTAAICGLIATLVLYRRNV 436 Query: 445 A 445 + Sbjct: 437 S 437 >ref|YP_004234158.1| general substrate transporter [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX45591.1| General substrate transporter [Acidovorax avenae subsp. avenae ATCC 19860] Length = 429 Score = 622 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 337/420 (80%), Positives = 372/420 (88%) Query: 27 STSSQSKFSTVLRVTSGNFMEMFDFFLFGFYATHISKAFFPSDNEFASLMLTFMTFGAGF 86 S + SK +TVLRVT GNFMEMFDFFLFGFYAT ISKAFFP+ NEFASLMLTFMTFGAGF Sbjct: 10 SAPASSKLATVLRVTGGNFMEMFDFFLFGFYATQISKAFFPAGNEFASLMLTFMTFGAGF 69 Query: 87 LMRPLGAIILGAYVDRVGRRQGLIVTLALMALRTVLIAFVPSYATIGVLAPVLVLVGRLL 146 LMRPLGA+ LGAYVDRVGRRQGLIVTLALMAL T+LIA VP YATIG+ AP+LVL+GRLL Sbjct: 70 LMRPLGAVFLGAYVDRVGRRQGLIVTLALMALGTLLIACVPGYATIGLAAPLLVLIGRLL 129 Query: 147 QGFSAGVELGGVSVYLAEMATPGRKRFYVSWQSASQQVAIIFAAAIGYGLNIWLTKDQVG 206 QGFSAGVELGGVSVYL+EMATPGRK FYVSWQSASQQVAII AAA+GY LN+ ++ Sbjct: 130 QGFSAGVELGGVSVYLSEMATPGRKGFYVSWQSASQQVAIIVAAALGYWLNVTFVPQEIA 189 Query: 207 DWGWRVPFFIGCLIVPVLFVIRRSLQETEEFMRRKHRPSTGQIFRSMIENWKLVIAGMML 266 D+ WRVPFF+GCLIVPVLF+IRRSLQETEEF RKHRPST +IFRS++ NW LVIAGMM+ Sbjct: 190 DFYWRVPFFVGCLIVPVLFIIRRSLQETEEFKARKHRPSTREIFRSIMSNWGLVIAGMMM 249 Query: 267 VSMTTVSFYLITVYTPTFGKNVLKLSTEASLIVTLCVGLSNFIWLPIMGALSDRIGRRPI 326 VSMTTVSFYLITVYTPTFGK+VL LST +LIVTLCV LSNF WLP+MGALSDR+GR+P+ Sbjct: 250 VSMTTVSFYLITVYTPTFGKSVLHLSTTDALIVTLCVALSNFFWLPVMGALSDRVGRKPL 309 Query: 327 LVTFTVLTILTAYPAVNWLVHDASFAKMLMVELWLSFLYASYNGAMVVALTEVMPAEVRT 386 LV FTVLTI TAYPA+ WLV FA+ML VELWLSFLYASYNGAMVVALTEVMP +VRT Sbjct: 310 LVAFTVLTIFTAYPALKWLVAAPDFARMLEVELWLSFLYASYNGAMVVALTEVMPVDVRT 369 Query: 387 VGFSLAYSLATAIFGGFTPAIATGLIQATGDKAAPGIWMSTAAVCGLIATLILYRNKAAR 446 VGFSLAYSLATA+FGGFTPA+ATGLI+ +GDKAAPG WM+ AAVCGL+ATL LYR A R Sbjct: 370 VGFSLAYSLATAVFGGFTPAVATGLIEWSGDKAAPGWWMTAAAVCGLLATLRLYRRAAGR 429