BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4814.p (336 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775927.1| AraC family ethanolamine operon transcriptio... 587 e-166 ref|YP_982847.1| helix-turn-helix domain-containing protein [Pol... 303 4e-80 ref|YP_521866.1| AraC family transcriptional regulator [Rhodofer... 298 6e-79 emb|CBA27072.1| hypothetical protein Csp_A00450 [Curvibacter put... 275 7e-72 ref|YP_001339350.1| helix-turn-helix domain-containing protein [... 254 1e-65 >ref|YP_003775927.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64019.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 332 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 307/336 (91%), Positives = 317/336 (94%), Gaps = 4/336 (1%) Query: 1 MPSLALSQADTSATHSQRALRTAVARDVDEHAHNLTDWEQRYDQITCGAFEGVLQEWQSS 60 M S LSQ DT AT QRALRT VARDVDEHAHNLTDWEQRYDQITCG+FEGVLQEWQS Sbjct: 1 MSSCLLSQPDTPATPIQRALRTTVARDVDEHAHNLTDWEQRYDQITCGSFEGVLQEWQSD 60 Query: 61 GLQIFREASSRAVRQSCQVWPDAFWFGIEVRTSGMRINGRQVGEDVVMTRPGACEFELVT 120 GLQIFREASSRAVRQSCQVWPDA+WFGIE RT+GMRINGRQVGEDVVMTRPGACEFELVT Sbjct: 61 GLQIFREASSRAVRQSCQVWPDAYWFGIEARTTGMRINGRQVGEDVVMTRPGACEFELVT 120 Query: 121 PDAHEIYGIVVQRDALQSSAARLGCRDALDWKRLGQAELLKVDHQGLEECRQQIAALLTL 180 PDAHEIYGIVVQRDALQ+SAARLGC+ DW+RLGQAELLKVDH GLE+CRQQIAALL + Sbjct: 121 PDAHEIYGIVVQRDALQASAARLGCQP--DWQRLGQAELLKVDHGGLEDCRQQIAALLAM 178 Query: 181 AGQASGAQAHAALQLRQEALLVALLAMLDEGEIEAEAGASFLRRRRIVNDAREFAMAHQD 240 AGQASGA HAALQLRQEA+LVALLAMLDEGEIEAEAGASFLRRRRIVNDAREFAMAHQD Sbjct: 179 AGQASGA--HAALQLRQEAVLVALLAMLDEGEIEAEAGASFLRRRRIVNDAREFAMAHQD 236 Query: 241 SPVTVPMLCEAVHVSRRTLQYCFEDVLGISPMSYLRSLRLNGVRRALCEGDGSQAVGSIG 300 SPVTVPMLCEAVHVSRRTLQYCFEDVLG+SPMSYLRSLRLNGVRRALC GDG QAVGSIG Sbjct: 237 SPVTVPMLCEAVHVSRRTLQYCFEDVLGMSPMSYLRSLRLNGVRRALCHGDGRQAVGSIG 296 Query: 301 DIAAAWGFANFSQFSCDYKKLFGQTPSAMLQARTRH 336 DIAAAWGFANFSQFSCDYKKLFGQTPSAMLQARTRH Sbjct: 297 DIAAAWGFANFSQFSCDYKKLFGQTPSAMLQARTRH 332 >ref|YP_982847.1| helix-turn-helix domain-containing protein [Polaromonas naphthalenivorans CJ2] gb|ABM37926.1| transcriptional regulator, AraC family [Polaromonas naphthalenivorans CJ2] Length = 347 Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 164/322 (50%), Positives = 216/322 (67%), Gaps = 12/322 (3%) Query: 20 LRTAVARDVDEHAHNLTDWEQRYDQITCGAFEGVLQEWQSSGLQIFREASSRAVRQSCQV 79 +R A D D+HA NLT WEQRYDQ+T G F G L E + +Q+F E +S+AVRQSC V Sbjct: 28 IRKVQAHDADDHARNLTAWEQRYDQVTRGPFHGTLTELRMPAMQVFMEHTSQAVRQSCCV 87 Query: 80 WPDAFWFGI------EVRTSGM--RINGRQVGEDVVMTRPGACEFELVTPDAHEIYGIVV 131 WPDAFWFG+ SGM RINGR D +M RPG EFEL+TP + IYGIV+ Sbjct: 88 WPDAFWFGVPGGANTAGERSGMNARINGRLGDADTIMVRPGNREFELLTPADYAIYGIVI 147 Query: 132 QRDALQSSAARLGCRDALDWKRLGQAELLKVDHQGLEECRQQIAALLTLAGQASGAQAHA 191 +RD+L +A++LGCR +DW +L +AE+L V C+Q +A L+ S Q A Sbjct: 148 KRDSLLVTASQLGCR--IDWAQLERAEVLHVAESARLACQQTLARLILQGRADSEGQPVA 205 Query: 192 ALQLRQEALLVALLAMLDEGEIEAEAGASFLRRRRIVNDAREFAMAHQDSPVTVPMLCEA 251 ++ ++A+++A+L+MLD E+++ SF+RR+RIV AR++ + H+D VTVP LCE Sbjct: 206 SVACAEQAVMLAVLSMLDASEVDSAVSNSFMRRQRIVARARDYVLGHRDQLVTVPELCER 265 Query: 252 VHVSRRTLQYCFEDVLGISPMSYLRSLRLNGVRRALCEGDGSQAVGSIGDIAAAWGFANF 311 +HVSRRTLQYCFEDVL ISP+ YLR +RLNG RR L E ++ DIAA WGF +F Sbjct: 266 LHVSRRTLQYCFEDVLAISPIQYLRLIRLNGARRELRE--RCSDARTVRDIAADWGFWHF 323 Query: 312 SQFSCDYKKLFGQTPSAMLQAR 333 SQFS DY+KLFGQ+PS L+ R Sbjct: 324 SQFSSDYRKLFGQSPSESLRQR 345 >ref|YP_521866.1| AraC family transcriptional regulator [Rhodoferax ferrireducens T118] gb|ABD68335.1| transcriptional regulator, AraC family [Rhodoferax ferrireducens T118] Length = 330 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 171/332 (51%), Positives = 215/332 (64%), Gaps = 13/332 (3%) Query: 3 SLALSQADTSATHSQRALRTAVARDVDEHAHNLTDWEQRYDQITCGAFEGVLQEWQSSGL 62 S+A TH +RT A D DEHAHNLTDWEQ YDQIT G F G L E + Sbjct: 11 SMAFDAPIVGNTHQ---IRTIEAFDADEHAHNLTDWEQSYDQITRGHFHGALAELHLPQM 67 Query: 63 QIFREASSRAVRQSCQVWPDAFWFGIEVRTSGMRINGRQVGEDVVMTRPGACEFELVTPD 122 Q+FRE +S+AVRQSC VWPDAFWFG+ ++ RINGR GE +M RPGACEFELVTP Sbjct: 68 QVFRERTSQAVRQSCCVWPDAFWFGLPEQSDQTRINGRLAGEHAIMVRPGACEFELVTPP 127 Query: 123 AHEIYGIVVQRDALQSSAARLGCRDALDWKRLGQAELLKVDHQGLEECRQQIAALLTLAG 182 + IYGIV++R+AL +A GCR +DW +L E++ VD Q ++ LL G Sbjct: 128 DYAIYGIVIRREALWQAAELSGCR--IDWAQLTGTEVMHVDSSSRASLLQTLSGLLQDGG 185 Query: 183 QASGAQAHAALQLRQEALLVALLAMLDEGEIEAEAGASFLRRRRIVNDAREFAMAHQDSP 242 + LRQ+ L+ ALLA+LD +++ SF RR+RIV AR+ +AH D Sbjct: 186 GCTDR------DLRQQVLVNALLALLDTRAVDSAVSGSFQRRQRIVAKARDLVLAHHDQA 239 Query: 243 VTVPMLCEAVHVSRRTLQYCFEDVLGISPMSYLRSLRLNGVRRALCEGDGSQAVGSIGDI 302 +TVP LCE + VSRRTLQYCFEDVLG+SPM YLR +RLNG RR L + S ++ D+ Sbjct: 240 ITVPRLCEQLFVSRRTLQYCFEDVLGMSPMQYLRLIRLNGARRHLRQ--ASSKSLTVQDV 297 Query: 303 AAAWGFANFSQFSCDYKKLFGQTPSAMLQART 334 AA WGF +FSQFS DY+KLFGQ+PS L+ R+ Sbjct: 298 AADWGFWHFSQFSSDYRKLFGQSPSESLRQRS 329 >emb|CBA27072.1| hypothetical protein Csp_A00450 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 344 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 149/313 (47%), Positives = 198/313 (63%), Gaps = 14/313 (4%) Query: 19 ALRTAVARDVDEHAHNLTDWEQRYDQITCGAFEGVLQEWQSSGLQIFREASSRAVRQSCQ 78 ALR ARD DEHA NLT+WEQ YDQ T G+F G+L+E Q +Q+FRE++S+ +RQ+C Sbjct: 42 ALRVIEARDADEHAGNLTNWEQCYDQTTPGSFHGLLEEMQLPDMQVFRESTSQGMRQTCC 101 Query: 79 VWPDAFWFGIEVRTSGMRINGRQVGEDVVMTRPGACEFELVTPDAHEIYGIVVQRDALQS 138 VWPDA WFG+ RINGR D V+ RPG CEFELVTP + I+G+VV++DAL+ Sbjct: 102 VWPDALWFGLPYSAQATRINGRTATPDSVLVRPGNCEFELVTPADYTIFGVVVRQDALRE 161 Query: 139 SAARLGCRDALDWKRLGQAELLKVDHQGLEECRQQIAALLTLAGQASGAQAHAALQLRQE 198 +A R+G LDW+RL +AE+++ +C + ALL +S H AL Sbjct: 162 AAHRMGFE--LDWERLSRAEVVQASPAARHQCLHTLHALLAGDAVSSTDPQHLALDALLP 219 Query: 199 ALLVALLAMLDEGEIEAEAGASFLRRRRIVNDAREFAMAHQDSPVTVPMLCEAVHVSRRT 258 L G +++ S RR+RIV AR++ +AH D +TVP LC+ + VSRRT Sbjct: 220 LLDT--------GVVDSAVRDSLARRQRIVAKARDYLLAHHDQTITVPDLCQRLFVSRRT 271 Query: 259 LQYCFEDVLGISPMSYLRSLRLNGVRRALCEGDGSQAVGSIGDIAAAWGFANFSQFSCDY 318 LQYCFEDVLG++P+ YLR LRLNG RR L S ++ D+AA W F +FSQF+ DY Sbjct: 272 LQYCFEDVLGMTPVQYLRILRLNGARRDLLRKPDS----AVRDVAADWSFWHFSQFASDY 327 Query: 319 KKLFGQTPSAMLQ 331 +KLFG +PS Q Sbjct: 328 RKLFGHSPSEARQ 340 >ref|YP_001339350.1| helix-turn-helix domain-containing protein [Marinomonas sp. MWYL1] gb|ABR69415.1| helix-turn-helix- domain containing protein AraC type [Marinomonas sp. MWYL1] Length = 324 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 139/313 (44%), Positives = 192/313 (61%), Gaps = 12/313 (3%) Query: 20 LRTAVARDVDEHAHNLTDWEQRYDQITCGAFEGVLQEWQSSGLQIFREASSRAVRQSCQV 79 +R + A D D HA NLT+W+Q YDQI+ G+F G + E GLQ+F E +S+A++Q C V Sbjct: 20 VRLSEAHDADLHASNLTNWQQEYDQISRGSFYGRIVELPFDGLQVFCEHTSQALQQKCVV 79 Query: 80 WPDAFWFGIE-VRTSGMRINGRQVGEDVVMTRPGACEFELVTPDAHEIYGIVVQRDALQS 138 WPD+ W GI V RING + + +M RPG C+F+L TP +++YG+VV R L Sbjct: 80 WPDSVWLGIPLVDQEESRINGLTINPNNIMCRPGDCDFQLSTPQDYDLYGLVVDRSKLIK 139 Query: 139 SAARLGCRDALDWKRLGQAELLKVDHQGLEECRQQIAALLTLAGQASGAQAHAALQLRQE 198 AA G L+WK L + L V + LEE R +A LL++ + + L+Q+ Sbjct: 140 MAAIHGVD--LNWKELTECGRLGVPDKTLEEVRFVLARLLSVQNNTTPPR------LQQD 191 Query: 199 ALLVALLAMLDEGEIEAEAGASFLRRRRIVNDAREFAMAHQDSPVTVPMLCEAVHVSRRT 258 +++ALL +L + S+ R+++V+ AR+F H D PVTV LCE +VSRRT Sbjct: 192 IVMMALLEVLKVETPQPAKTQSYYHRKKVVDCARQFLDYHLDEPVTVTQLCEITNVSRRT 251 Query: 259 LQYCFEDVLGISPMSYLRSLRLNGVRRALCEGDGSQAVGSIGDIAAAWGFANFSQFSCDY 318 LQY FE +LG+SP+ YLR RLNGVRR+L + QAV DIAA WGF + SQF+ DY Sbjct: 252 LQYSFESILGVSPIQYLRISRLNGVRRSLVQAKDGQAV---SDIAAQWGFWHLSQFAKDY 308 Query: 319 KKLFGQTPSAMLQ 331 K LFG+ PS L+ Sbjct: 309 KLLFGEQPSQTLE 321