BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4813.p (355 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775928.1| transmembrane protein [Herbaspirillum serope... 362 6e-98 ref|YP_004473662.1| hypothetical protein Psefu_1594 [Pseudomonas... 295 1e-77 ref|YP_606487.1| hypothetical protein PSEEN0749 [Pseudomonas ent... 265 8e-69 gb|AEG69253.1| conserved hypothetical protein [Ralstonia solanac... 242 6e-62 emb|CAQ35511.1| conserved hypothetical protein [Ralstonia solana... 241 1e-61 >ref|YP_003775928.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64020.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 365 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 203/332 (61%), Positives = 242/332 (72%), Gaps = 5/332 (1%) Query: 14 LIAALWALPAAAQSSSSSPPAPGQARQALSL-GSTPYTMAVYANADLNDLPSHVERAVII 72 L AL L A S+ + P Q L+L G TPYT+ +YANADL+ P+ ++RAV+I Sbjct: 27 LFMALTMLTAITARSADAAPVA----QPLTLPGPTPYTLTLYANADLSHPPAALQRAVVI 82 Query: 73 VHGVKRNAVDYFALGQHLLQQAALTSGNTLLLAPNFMARKDAGLLPGMPIWAGNGWMQGA 132 VHG+KRNA DYFA+GQ LL A L+ TLLLAP FM +D+G M +WAG+ WMQGA Sbjct: 83 VHGIKRNADDYFAIGQRLLTAAQLSPATTLLLAPRFMTARDSGASAQMALWAGDAWMQGA 142 Query: 133 ASIRGVTGISSFAALDDLVRWLAEPRRFPDLREIVLIGHSAGAQLMQRYALLNPVAETLQ 192 AS GVTGI+SF ALDDL+RWLA+ RFP LREIVLIGHSAGAQLMQRYA+LN + E LQ Sbjct: 143 ASKDGVTGITSFQALDDLLRWLADAGRFPALREIVLIGHSAGAQLMQRYAMLNSLDEALQ 202 Query: 193 SAGIQVRYIISSPSSYLYVSPERPQAGAFAVPAAASCPHYDHYRYGLVEPPAYLVQQHLD 252 I +RY++SSPSSYLY SPERP FA+P A+CP YD YRYGL + P YL +Q LD Sbjct: 203 QRNIHLRYVVSSPSSYLYASPERPDGNGFALPKTAACPDYDDYRYGLQQAPPYLARQELD 262 Query: 253 ARQLWARYAARDVRYLVGGRDVDPQHRFLDRSCGAALQGPTRLARQLAYRDYEQFLAGQW 312 +L+ARYA RDVRY+VG D DPQ RFLDRSC AALQG +R+ARQLAY YEQFLA +W Sbjct: 263 GPRLFARYAGRDVRYMVGQHDTDPQQRFLDRSCAAALQGASRVARQLAYVAYEQFLAQRW 322 Query: 313 QIPIHHPQQVIPDAAHGAPRLYRSPLAPGLIF 344 Q P+ H Q++IP AAHGA RL+ P A G IF Sbjct: 323 QRPVRHEQRLIPGAAHGAERLFGRPEAVGWIF 354 >ref|YP_004473662.1| hypothetical protein Psefu_1594 [Pseudomonas fulva 12-X] gb|AEF21568.1| hypothetical protein Psefu_1594 [Pseudomonas fulva 12-X] Length = 344 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 162/302 (53%), Positives = 193/302 (63%), Gaps = 3/302 (0%) Query: 34 APGQARQ-ALSLG-STPYTMAVYANADLNDLPSHVERAVIIVHGVKRNAVDYFALGQHLL 91 AP A L LG S PY YANAD+ S RAV++VHGV+RNA DYF G LL Sbjct: 30 APSSANPYVLRLGQSQPYNFLAYANADMTG-ASQASRAVVLVHGVRRNADDYFETGLKLL 88 Query: 92 QQAALTSGNTLLLAPNFMARKDAGLLPGMPIWAGNGWMQGAASIRGVTGISSFAALDDLV 151 +A L + LLLA N++ KD MP+WA + WM G AS +G TGI +FA LDD++ Sbjct: 89 NKAGLDGRDNLLLALNYLTAKDRRAGEDMPLWARDKWMHGTASEQGRTGIEAFAVLDDVL 148 Query: 152 RWLAEPRRFPDLREIVLIGHSAGAQLMQRYALLNPVAETLQSAGIQVRYIISSPSSYLYV 211 +LA+ +RFP L+EIVLIGHSAG QLMQRYA+L L GI VRY++SSPSSY+Y+ Sbjct: 149 AYLADRQRFPGLKEIVLIGHSAGGQLMQRYAMLGRGDARLADRGIAVRYVVSSPSSYVYL 208 Query: 212 SPERPQAGAFAVPAAASCPHYDHYRYGLVEPPAYLVQQHLDARQLWARYAARDVRYLVGG 271 R QAG + A CP Y+ YRYGL P YL QHL QL RYAARDV Y+VG Sbjct: 209 DGNRLQAGTIGPISTADCPDYNRYRYGLEAAPPYLTHQHLSTEQLLLRYAARDVTYMVGE 268 Query: 272 RDVDPQHRFLDRSCGAALQGPTRLARQLAYRDYEQFLAGQWQIPIHHPQQVIPDAAHGAP 331 D +P+HR LDRSC AALQGP RL RQ Y YE FL+ +W I IHHPQ +P H A Sbjct: 269 HDNNPEHRVLDRSCAAALQGPNRLERQRNYLRYEAFLSQKWGIAIHHPQITVPGVGHDAA 328 Query: 332 RL 333 RL Sbjct: 329 RL 330 >ref|YP_606487.1| hypothetical protein PSEEN0749 [Pseudomonas entomophila L48] emb|CAK13672.1| conserved hypothetical protein [Pseudomonas entomophila L48] Length = 313 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 155/314 (49%), Positives = 188/314 (59%), Gaps = 6/314 (1%) Query: 32 PPAPGQARQALSLGS-TPYTMAVYANADLNDLPSHVERAVIIVHGVKRNAVDYFALGQHL 90 P A Q + LG PY VYANA L+ S VERAVI++HGV+R+A DY+ G L Sbjct: 2 PAWADDAPQRVKLGQGEPYDFTVYANAALDSRLS-VERAVIVLHGVRRDAGDYYRGGLSL 60 Query: 91 LQQAALTSGNTLLLAPNFMARKDAGLLPGMPIWAGNGWMQGAASIRGVTGISSFAALDDL 150 L A L +TLL+APNF+ D P+W + WM G AS G GI++F LDDL Sbjct: 61 LGNAGLGQRDTLLMAPNFLTASDPQATDLQPLWPKDKWMHGTASSGGREGIAAFTVLDDL 120 Query: 151 VRWLAEPRRFPDLREIVLIGHSAGAQLMQRYALLNPVAETLQSAGIQVRYIISSPSSYLY 210 + +LA+ RFP L+E+VL GHSAG QL+QRY LL A ++VRY ++SPSSYLY Sbjct: 121 LIYLADRERFPRLKEVVLFGHSAGGQLLQRYTLLGKGA----PGALRVRYFVASPSSYLY 176 Query: 211 VSPERPQAGAFAVPAAASCPHYDHYRYGLVEPPAYLVQQHLDARQLWARYAARDVRYLVG 270 + RPQ FA A C YD YRYGL P Y Q LDARQ+W RYA RDV YLVG Sbjct: 177 LDANRPQGEGFAPLPAGQCAGYDRYRYGLEGAPPYFTPQGLDARQVWRRYAGRDVTYLVG 236 Query: 271 GRDVDPQHRFLDRSCGAALQGPTRLARQLAYRDYEQFLAGQWQIPIHHPQQVIPDAAHGA 330 RD P+ R +D SCGA QG R+ RQLAY YE FLA QW P+ H Q V+P H A Sbjct: 237 ERDRHPESRVMDHSCGAEAQGRDRVERQLAYLRYEAFLARQWAAPVEHRQFVLPGIGHDA 296 Query: 331 PRLYRSPLAPGLIF 344 R+ P L+F Sbjct: 297 GRMLADPGLAHLLF 310 >gb|AEG69253.1| conserved hypothetical protein [Ralstonia solanacearum Po82] Length = 376 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 136/318 (42%), Positives = 189/318 (59%), Gaps = 7/318 (2%) Query: 34 APGQARQALSLGS--TPYTMAVYANADLNDLPSHVERAVIIVHGVKRNAVDYFALGQHLL 91 A G+A Q + LGS Y VYAN L+ + V + HG++RN DYFA G LL Sbjct: 47 ASGRAWQRIHLGSGGAGYDFPVYANHPLDGDLRGILEVVFVQHGLQRNGNDYFAAGIALL 106 Query: 92 QQAALTSGNTLLLAPNFMARKDAGL-LPGMPIWAGNGWMQGAASIRG-VTGISSFAALDD 149 Q + LL+APNF D G MP+W+ NGW+ G ++ TG+SS LDD Sbjct: 107 QASGRHPDEILLVAPNFPGEPDVGKGFDRMPMWSVNGWLGGFNAVNAPYTGLSSLQVLDD 166 Query: 150 LVRWLAEPRRFPDLREIVLIGHSAGAQLMQRYALLNPVAETLQSAGIQVRYIISSPSSYL 209 L+ ++ +P R PD+R + + GHS GAQ++ RYA+LN V E +++ G+++RY++++PSSYL Sbjct: 167 LIAFVTDPARLPDVRRVTVAGHSGGAQIVHRYAVLNNVDERIRARGVELRYVVANPSSYL 226 Query: 210 YVSPERPQAGAFAVPAAASCPHYDHYRYGLVEPPAYLVQQHLDARQLWARYAARDVRYLV 269 Y +PERP+ FA A++CP YDHY+YG+V+ Y +D L+ RYA R V YLV Sbjct: 227 YFTPERPRGRGFAPYDASACPDYDHYKYGMVDMVPYAAG--MDGMTLFKRYAQRQVTYLV 284 Query: 270 GGRDVDPQHRFLDRSCGAALQGPTRLARQLAYRDYEQFLAGQWQIPIHHPQQVIPDAAHG 329 GG D DP HR LD++CGA +GPTRL R Y YE++LAG + P H +VI H Sbjct: 285 GGNDNDPNHRVLDKACGAEAEGPTRLDRARNYLRYERYLAGARKSPRHQAYEVI-GVGHD 343 Query: 330 APRLYRSPLAPGLIFAQP 347 R+ S +F P Sbjct: 344 QARMLGSRCGAQAVFGTP 361 >emb|CAQ35511.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] Length = 375 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 134/315 (42%), Positives = 188/315 (59%), Gaps = 6/315 (1%) Query: 36 GQARQALSLGS-TPYTMAVYANADLNDLPSHVERAVIIVHGVKRNAVDYFALGQHLLQQA 94 G A Q + LGS Y VYAN L+ S + V + HG++RN DYFA G LLQ + Sbjct: 49 GPAWQRIHLGSGAGYDFPVYANHPLDGDLSGIREVVFVQHGLQRNGNDYFAAGIALLQAS 108 Query: 95 ALTSGNTLLLAPNFMARKDAGL-LPGMPIWAGNGWMQGAASIRG-VTGISSFAALDDLVR 152 LL+ PNF D G MP+W+ NGW+ G ++ TG+SS LDDL+ Sbjct: 109 GRHPDEILLVVPNFPGEPDVGKGFDRMPMWSVNGWLGGFNAVNAPYTGLSSLQVLDDLIA 168 Query: 153 WLAEPRRFPDLREIVLIGHSAGAQLMQRYALLNPVAETLQSAGIQVRYIISSPSSYLYVS 212 ++ +P R P++R + + GHS GAQ++ RYA+LN V E +++ G+++RY++++PSSYLY + Sbjct: 169 FVTDPARLPNVRRVTVAGHSGGAQIVHRYAVLNNVDERIRARGVELRYVVANPSSYLYFT 228 Query: 213 PERPQAGAFAVPAAASCPHYDHYRYGLVEPPAYLVQQHLDARQLWARYAARDVRYLVGGR 272 PERP+ FA A++CP YDHY+YG+V+ Y +D L+ RYA R V YLVGG Sbjct: 229 PERPRGRGFAPYDASACPDYDHYKYGMVDMVPYAAG--MDGMMLFKRYAQRQVTYLVGGN 286 Query: 273 DVDPQHRFLDRSCGAALQGPTRLARQLAYRDYEQFLAGQWQIPIHHPQQVIPDAAHGAPR 332 D DP HR LD++CGA +GPTRL R Y YE++LAG + P H +VI H R Sbjct: 287 DNDPNHRVLDKACGAEAEGPTRLDRARNYLRYERYLAGARKPPRHQAYEVI-GVGHDQAR 345 Query: 333 LYRSPLAPGLIFAQP 347 ++ S +F P Sbjct: 346 MFGSRCGAQAVFGMP 360