BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4811.p         (146 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775930.1| Fe-S-cluster oxidoreductase [Herbaspirillum ...   214   3e-54
ref|ZP_06685911.1| ferredoxin [Achromobacter piechaudii ATCC 435...   141   4e-32
ref|YP_787345.1| hypothetical protein BAV2849 [Bordetella avium ...   139   9e-32
ref|YP_001629337.1| hypothetical protein Bpet0734 [Bordetella pe...   135   2e-30
ref|YP_004416761.1| hypothetical protein PT7_1597 [Pusillimonas ...   133   8e-30

>ref|YP_003775930.1| Fe-S-cluster oxidoreductase [Herbaspirillum seropedicae SmR1]
 gb|ADJ64022.1| Fe-S-cluster oxidoreductase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 127

 Score =  214 bits (545), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 110/123 (89%), Positives = 118/123 (95%)

Query: 20  MADSPDNPCTACGGCCAHFRVSFYCGELSDGLGGVVPVELTSKVNDTLACMKGTENGHGR 79
           MADSPDNPCTACGGCCAHFRVSFYCGELSDGLGG+VPVELTSKVND+LACMKGTE+GHGR
Sbjct: 1   MADSPDNPCTACGGCCAHFRVSFYCGELSDGLGGMVPVELTSKVNDSLACMKGTEHGHGR 60

Query: 80  CIALVGELGKPGVGCRIYPQRPSTCREFSPWEPDGQPNPACQQRRAALDLPALAALPPEQ 139
           CIALVGELG+PGVGC IYP+RPSTCREFSPWE DG+PNP CQQRR AL LPAL+ALPP+Q
Sbjct: 61  CIALVGELGQPGVGCSIYPRRPSTCREFSPWEADGRPNPVCQQRRQALGLPALSALPPQQ 120

Query: 140 AAP 142
           AAP
Sbjct: 121 AAP 123


>ref|ZP_06685911.1| ferredoxin [Achromobacter piechaudii ATCC 43553]
 gb|EFF77186.1| ferredoxin [Achromobacter piechaudii ATCC 43553]
          Length = 153

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 75/123 (60%), Positives = 86/123 (69%), Gaps = 1/123 (0%)

Query: 21  ADSPD-NPCTACGGCCAHFRVSFYCGELSDGLGGVVPVELTSKVNDTLACMKGTENGHGR 79
            D PD NPC  CG CCAHFRVSFYCGEL+   GG VPVEL ++++   ACMKGTE G GR
Sbjct: 19  GDKPDANPCLDCGACCAHFRVSFYCGELAGENGGQVPVELVTQMSPLRACMKGTEMGGGR 78

Query: 80  CIALVGELGKPGVGCRIYPQRPSTCREFSPWEPDGQPNPACQQRRAALDLPALAALPPEQ 139
           CI+L GELGKPG+ C IY  RP+ CREF  W PDG PNP CQ+ RA L LP +A  P  +
Sbjct: 79  CISLRGELGKPGIHCAIYENRPTPCREFDIWMPDGSPNPDCQRLRAGLGLPPVAPRPDAE 138

Query: 140 AAP 142
             P
Sbjct: 139 NDP 141


>ref|YP_787345.1| hypothetical protein BAV2849 [Bordetella avium 197N]
 emb|CAJ50459.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 156

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 70/126 (55%), Positives = 87/126 (69%)

Query: 17  FTDMADSPDNPCTACGGCCAHFRVSFYCGELSDGLGGVVPVELTSKVNDTLACMKGTENG 76
             D+A +  NPC +CG CCAHFRVSFY GE+S  LGG+VP EL ++++ +  CMKGTE G
Sbjct: 18  LADLAGADANPCLSCGACCAHFRVSFYFGEVSGALGGLVPEELVTQISPSRVCMKGTEQG 77

Query: 77  HGRCIALVGELGKPGVGCRIYPQRPSTCREFSPWEPDGQPNPACQQRRAALDLPALAALP 136
            GRC +L GELG+PG+ C IY  RP+ CREF  W+PDG PNP CQ+ RA L L  L A P
Sbjct: 78  GGRCTSLRGELGQPGIHCAIYENRPTPCREFEMWQPDGSPNPDCQRLRARLGLAPLQARP 137

Query: 137 PEQAAP 142
             +  P
Sbjct: 138 DAENDP 143


>ref|YP_001629337.1| hypothetical protein Bpet0734 [Bordetella petrii DSM 12804]
 emb|CAP41066.1| conserved hypothetical protein [Bordetella petrii]
          Length = 152

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/121 (57%), Positives = 83/121 (68%)

Query: 26  NPCTACGGCCAHFRVSFYCGELSDGLGGVVPVELTSKVNDTLACMKGTENGHGRCIALVG 85
           NPC +CG CCAHFRVSFYCGE++   GG VPV+L   ++    CM GTE G GRC+AL G
Sbjct: 24  NPCLSCGACCAHFRVSFYCGEVAGENGGTVPVDLVRPISPLRVCMAGTEQGGGRCVALRG 83

Query: 86  ELGKPGVGCRIYPQRPSTCREFSPWEPDGQPNPACQQRRAALDLPALAALPPEQAAPLAT 145
           ELG+PG+ C IY QRP+ CREF  W+PDG  NP CQ+ RAAL LP LA  P  +  P   
Sbjct: 84  ELGQPGIHCAIYLQRPTPCREFEVWQPDGSVNPDCQRLRAALGLPPLAPRPDAENDPQGP 143

Query: 146 V 146
           V
Sbjct: 144 V 144


>ref|YP_004416761.1| hypothetical protein PT7_1597 [Pusillimonas sp. T7-7]
 gb|AEC20137.1| hypothetical protein PT7_1597 [Pusillimonas sp. T7-7]
          Length = 188

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 68/111 (61%), Positives = 79/111 (71%)

Query: 26  NPCTACGGCCAHFRVSFYCGELSDGLGGVVPVELTSKVNDTLACMKGTENGHGRCIALVG 85
           NPC +CG CCAHFRVSFYCGE++   GG VP EL ++V    ACM+GTE G  RC AL G
Sbjct: 59  NPCLSCGACCAHFRVSFYCGEIAGESGGTVPPELVTQVGPLRACMQGTEYGGKRCTALRG 118

Query: 86  ELGKPGVGCRIYPQRPSTCREFSPWEPDGQPNPACQQRRAALDLPALAALP 136
           ELG+ G+ C IY QRPS CREFSPW   G+PNP CQ+ R A+ LPAL   P
Sbjct: 119 ELGQSGIHCAIYEQRPSPCREFSPWLEHGEPNPDCQRVRKAIGLPALPPPP 169